Wall clock time and date at job start Tue Mar 31 2020 01:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47343 * 318.11688 * 3 2 1 5 5 C 1.52993 * 109.47209 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47209 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47025 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47112 * 180.02562 * 7 6 5 9 9 O 1.20826 * 119.99621 * 0.02562 * 8 7 6 10 10 O 1.34228 * 120.00321 * 179.97438 * 8 7 6 11 11 C 1.45197 * 116.99999 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47232 * 180.02562 * 11 10 8 13 13 C 1.50702 * 113.56376 * 51.06556 * 12 11 10 14 14 H 1.08006 * 120.00314 * 249.39465 * 13 12 11 15 15 C 1.37880 * 119.99954 * 69.39070 * 13 12 11 16 16 N 1.31516 * 119.99754 * 5.64914 * 15 13 12 17 17 Si 1.86799 * 120.00049 * 185.64363 * 15 13 12 18 18 H 1.48495 * 109.46985 * 90.00642 * 17 15 13 19 19 H 1.48503 * 109.46885 * 210.00336 * 17 15 13 20 20 H 1.48501 * 109.47290 * 330.00230 * 17 15 13 21 21 C 1.53355 * 114.57021 * 185.34393 * 12 11 10 22 22 O 1.43351 * 88.49668 * 86.63174 * 21 12 11 23 23 C 1.43341 * 88.31913 * 28.13038 * 22 21 12 24 24 H 4.44654 * 5.63410 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.47079 * 198.11736 * 3 2 1 26 26 H 1.09003 * 109.47092 * 78.11941 * 3 2 1 27 27 H 1.09001 * 109.46994 * 59.99996 * 4 3 2 28 28 H 1.08998 * 109.47020 * 300.00607 * 4 3 2 29 29 H 1.09001 * 109.47185 * 60.00065 * 5 4 3 30 30 H 1.09003 * 109.47120 * 300.00188 * 5 4 3 31 31 H 1.09001 * 109.46994 * 59.99948 * 6 5 4 32 32 H 1.08994 * 109.47271 * 299.99853 * 6 5 4 33 33 H 1.09001 * 109.47115 * 60.00221 * 7 6 5 34 34 H 1.09003 * 109.47374 * 300.00231 * 7 6 5 35 35 H 1.08995 * 109.47110 * 60.00738 * 11 10 8 36 36 H 1.08998 * 109.47376 * 300.00516 * 11 10 8 37 37 H 0.96997 * 120.00043 * 180.02562 * 16 15 13 38 38 H 1.09002 * 113.39429 * 331.71090 * 21 12 11 39 39 H 1.09007 * 113.39410 * 201.55423 * 21 12 11 40 40 H 1.08996 * 113.39768 * 86.75185 * 23 22 21 41 41 H 1.09009 * 113.39217 * 216.90741 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0731 0.9630 5 6 4.6865 -1.0719 0.9635 6 6 5.1970 -2.1461 1.9260 7 6 6.7270 -2.1453 1.9260 8 6 7.2299 -3.2037 2.8736 9 8 6.4450 -3.8887 3.4857 10 8 8.5497 -3.3862 3.0368 11 6 8.9618 -4.4231 3.9659 12 6 10.4898 -4.4822 4.0192 13 6 11.1363 -3.1427 4.2621 14 1 11.7006 -2.6648 3.4749 15 6 11.0074 -2.5273 5.4892 16 7 10.4164 -3.1564 6.4814 17 14 11.6724 -0.8002 5.7423 18 1 10.6161 0.1901 5.4129 19 1 12.0849 -0.6313 7.1589 20 1 12.8450 -0.5864 4.8565 21 6 11.0543 -5.6263 4.8701 22 8 10.9695 -6.4747 3.7177 23 6 11.1358 -5.3094 2.8998 24 1 -1.0499 -0.0004 0.0001 25 1 3.0089 0.9775 0.3196 26 1 3.0094 -0.2108 -1.0057 27 1 2.7937 -2.0499 0.6434 28 1 2.7930 -0.8617 1.9686 29 1 5.0490 -0.0950 1.2833 30 1 5.0503 -1.2831 -0.0421 31 1 4.8345 -3.1228 1.6058 32 1 4.8333 -1.9353 2.9316 33 1 7.0899 -1.1686 2.2460 34 1 7.0905 -2.3562 0.9202 35 1 8.5722 -5.3851 3.6329 36 1 8.5724 -4.1973 4.9585 37 1 10.3253 -2.7234 7.3446 38 1 10.3922 -5.9302 5.6809 39 1 12.0769 -5.4526 5.2052 40 1 12.1796 -5.0523 2.7199 41 1 10.5455 -5.3358 1.9837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344138277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:02 Heat of formation + Delta-G solvation = -72.651533 kcal Electronic energy + Delta-G solvation = -21294.907356 eV Core-core repulsion = 17949.108467 eV Total energy + Delta-G solvation = -3345.798889 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.01792 -39.33431 -36.80097 -35.67104 -34.01458 -32.99962 -31.38789 -29.92117 -27.74899 -25.50264 -25.07057 -24.42658 -23.14092 -21.23755 -19.94471 -18.67028 -18.27638 -17.07547 -16.67169 -16.32983 -15.65625 -15.50861 -15.02327 -14.78589 -14.37570 -14.22682 -14.17504 -13.87314 -13.75156 -12.83961 -12.53886 -12.15934 -12.11874 -11.76793 -11.57930 -11.37480 -11.26738 -11.17243 -11.04767 -10.92109 -10.66836 -10.64155 -10.53264 -10.36944 -10.33162 -9.81687 -9.77276 -9.03347 -8.95428 -8.70891 -8.49609 -6.18125 -4.21933 2.56638 2.59902 2.84740 3.23770 3.31295 3.33216 3.41528 4.10802 4.32412 4.74300 4.76501 4.83892 5.09850 5.11077 5.13273 5.18901 5.32079 5.43502 5.48670 5.61531 5.66253 5.72439 5.81962 5.84488 5.90479 6.01189 6.06210 6.19523 6.27455 6.31557 6.35627 6.47391 6.68383 6.82714 7.08003 7.15742 7.29332 7.37573 7.42249 7.77593 8.13130 8.50815 8.75450 9.43332 10.91160 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020041 B = 0.003236 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.795953 B = 8650.347733 C = 9541.130792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.183 4.183 3 C -0.016 4.016 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.108 4.108 7 C -0.114 4.114 8 C 0.451 3.549 9 O -0.526 6.526 10 O -0.333 6.333 11 C 0.108 3.892 12 C 0.021 3.979 13 C -0.504 4.504 14 H 0.065 0.935 15 C 0.068 3.932 16 N -0.889 5.889 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.060 3.940 22 O -0.403 6.403 23 C 0.030 3.970 24 H 0.215 0.785 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.264 0.736 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.143 5.556 -10.749 16.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.183 4.183 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.146 4.146 7 C -0.152 4.152 8 C 0.294 3.706 9 O -0.417 6.417 10 O -0.247 6.247 11 C 0.034 3.966 12 C 0.021 3.979 13 C -0.541 4.541 14 H 0.084 0.916 15 C -0.134 4.134 16 N -0.526 5.526 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.017 4.017 22 O -0.323 6.323 23 C -0.046 4.046 24 H 0.232 0.768 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.394 5.057 -10.388 16.226 hybrid contribution 0.072 1.019 0.465 1.123 sum -11.321 6.076 -9.923 16.234 Atomic orbital electron populations 1.24905 0.96015 1.01278 1.01331 1.23263 0.94729 1.00178 1.00161 1.18814 0.84499 1.00706 1.01184 1.21544 0.95604 0.98580 0.99512 1.21608 0.94608 0.99494 0.99993 1.21406 0.92861 0.99690 1.00646 1.21350 0.96667 0.98010 0.99164 1.23616 0.81851 0.83605 0.81482 1.90605 1.57378 1.46920 1.46792 1.86501 1.23384 1.54959 1.59885 1.22767 0.96313 0.85840 0.91673 1.20424 0.89843 0.96034 0.91646 1.20724 1.32636 1.02680 0.98091 0.91636 1.24969 0.94852 0.97843 0.95777 1.69916 1.43136 1.37186 1.02329 0.86533 0.79253 0.84583 0.77311 1.20553 1.21276 1.19742 1.23613 1.00562 0.88033 0.89504 1.89632 1.93902 1.28267 1.20456 1.23837 1.00116 0.84935 0.95760 0.76777 0.89492 0.89516 0.91435 0.91404 0.91402 0.91469 0.91088 0.90992 0.87934 0.88161 0.93802 0.90099 0.92613 0.91018 0.90769 0.91130 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.91 19.25 29.55 0.57 -1.34 16 2 C -0.18 -1.76 13.34 -37.12 -0.50 -2.25 16 3 C -0.02 -0.12 5.70 -29.52 -0.17 -0.29 16 4 C -0.11 -0.97 5.17 -26.73 -0.14 -1.11 16 5 C -0.12 -1.01 5.21 -26.73 -0.14 -1.15 16 6 C -0.11 -1.26 4.50 -26.73 -0.12 -1.38 16 7 C -0.11 -1.51 5.81 -27.88 -0.16 -1.67 16 8 C 0.45 8.64 7.96 36.01 0.29 8.92 16 9 O -0.53 -11.40 15.73 -18.75 -0.29 -11.69 16 10 O -0.33 -7.31 9.79 -39.25 -0.38 -7.69 16 11 C 0.11 2.56 4.83 37.16 0.18 2.74 16 12 C 0.02 0.51 0.76 -155.24 -0.12 0.39 16 13 C -0.50 -12.93 8.01 -34.44 -0.28 -13.20 16 14 H 0.07 1.67 7.82 -52.48 -0.41 1.26 16 15 C 0.07 1.78 5.36 -17.82 -0.10 1.69 16 16 N -0.89 -23.99 12.09 55.43 0.67 -23.32 16 17 Si 0.90 20.33 29.54 -169.99 -5.02 15.30 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 C 0.06 1.40 7.19 24.57 0.18 1.58 16 22 O -0.40 -9.24 12.57 -35.23 -0.44 -9.68 16 23 C 0.03 0.66 7.89 24.62 0.19 0.85 16 24 H 0.22 1.15 7.80 -54.10 -0.42 0.73 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 32 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 33 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.04 1.02 7.96 -51.93 -0.41 0.60 16 36 H 0.08 2.12 7.58 -51.93 -0.39 1.72 16 37 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.07 1.71 8.13 -51.93 -0.42 1.29 16 39 H 0.07 1.74 8.10 -51.93 -0.42 1.32 16 40 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 41 H 0.06 1.24 8.13 -51.92 -0.42 0.82 16 LS Contribution 355.30 15.07 5.35 5.35 Total: -1.00 -29.97 355.30 -7.11 -37.08 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.68 Total: 0.87 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -0.31 Total: -6.22 kcal Atomic # 7 Polarization: -23.99 SS G_CDS: 0.67 Total: -23.32 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -1.12 Total: -29.07 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.97 -7.11 -37.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344138277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.570 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds