Wall clock time and date at job start Tue Mar 31 2020 01:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47343 * 318.11688 * 3 2 1 5 5 C 1.52993 * 109.47209 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47209 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47025 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47112 * 180.02562 * 7 6 5 9 9 O 1.20826 * 119.99621 * 0.02562 * 8 7 6 10 10 O 1.34228 * 120.00321 * 179.97438 * 8 7 6 11 11 C 1.45197 * 116.99999 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47232 * 180.02562 * 11 10 8 13 13 C 1.50702 * 113.56376 * 51.06556 * 12 11 10 14 14 H 1.08006 * 120.00314 * 249.39465 * 13 12 11 15 15 C 1.37880 * 119.99954 * 69.39070 * 13 12 11 16 16 N 1.31516 * 119.99754 * 5.64914 * 15 13 12 17 17 Si 1.86799 * 120.00049 * 185.64363 * 15 13 12 18 18 H 1.48495 * 109.46985 * 90.00642 * 17 15 13 19 19 H 1.48503 * 109.46885 * 210.00336 * 17 15 13 20 20 H 1.48501 * 109.47290 * 330.00230 * 17 15 13 21 21 C 1.53355 * 114.57021 * 185.34393 * 12 11 10 22 22 O 1.43351 * 88.49668 * 86.63174 * 21 12 11 23 23 C 1.43341 * 88.31913 * 28.13038 * 22 21 12 24 24 H 4.44654 * 5.63410 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.47079 * 198.11736 * 3 2 1 26 26 H 1.09003 * 109.47092 * 78.11941 * 3 2 1 27 27 H 1.09001 * 109.46994 * 59.99996 * 4 3 2 28 28 H 1.08998 * 109.47020 * 300.00607 * 4 3 2 29 29 H 1.09001 * 109.47185 * 60.00065 * 5 4 3 30 30 H 1.09003 * 109.47120 * 300.00188 * 5 4 3 31 31 H 1.09001 * 109.46994 * 59.99948 * 6 5 4 32 32 H 1.08994 * 109.47271 * 299.99853 * 6 5 4 33 33 H 1.09001 * 109.47115 * 60.00221 * 7 6 5 34 34 H 1.09003 * 109.47374 * 300.00231 * 7 6 5 35 35 H 1.08995 * 109.47110 * 60.00738 * 11 10 8 36 36 H 1.08998 * 109.47376 * 300.00516 * 11 10 8 37 37 H 0.96997 * 120.00043 * 180.02562 * 16 15 13 38 38 H 1.09002 * 113.39429 * 331.71090 * 21 12 11 39 39 H 1.09007 * 113.39410 * 201.55423 * 21 12 11 40 40 H 1.08996 * 113.39768 * 86.75185 * 23 22 21 41 41 H 1.09009 * 113.39217 * 216.90741 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0731 0.9630 5 6 4.6865 -1.0719 0.9635 6 6 5.1970 -2.1461 1.9260 7 6 6.7270 -2.1453 1.9260 8 6 7.2299 -3.2037 2.8736 9 8 6.4450 -3.8887 3.4857 10 8 8.5497 -3.3862 3.0368 11 6 8.9618 -4.4231 3.9659 12 6 10.4898 -4.4822 4.0192 13 6 11.1363 -3.1427 4.2621 14 1 11.7006 -2.6648 3.4749 15 6 11.0074 -2.5273 5.4892 16 7 10.4164 -3.1564 6.4814 17 14 11.6724 -0.8002 5.7423 18 1 10.6161 0.1901 5.4129 19 1 12.0849 -0.6313 7.1589 20 1 12.8450 -0.5864 4.8565 21 6 11.0543 -5.6263 4.8701 22 8 10.9695 -6.4747 3.7177 23 6 11.1358 -5.3094 2.8998 24 1 -1.0499 -0.0004 0.0001 25 1 3.0089 0.9775 0.3196 26 1 3.0094 -0.2108 -1.0057 27 1 2.7937 -2.0499 0.6434 28 1 2.7930 -0.8617 1.9686 29 1 5.0490 -0.0950 1.2833 30 1 5.0503 -1.2831 -0.0421 31 1 4.8345 -3.1228 1.6058 32 1 4.8333 -1.9353 2.9316 33 1 7.0899 -1.1686 2.2460 34 1 7.0905 -2.3562 0.9202 35 1 8.5722 -5.3851 3.6329 36 1 8.5724 -4.1973 4.9585 37 1 10.3253 -2.7234 7.3446 38 1 10.3922 -5.9302 5.6809 39 1 12.0769 -5.4526 5.2052 40 1 12.1796 -5.0523 2.7199 41 1 10.5455 -5.3358 1.9837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344138277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:02 Heat of formation + Delta-G solvation = -88.193578 kcal Electronic energy + Delta-G solvation = -21295.581309 eV Core-core repulsion = 17949.108467 eV Total energy + Delta-G solvation = -3346.472843 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.76573 -41.00990 -37.76881 -37.10663 -34.95716 -34.85244 -32.30743 -31.70827 -28.74661 -27.22091 -26.87738 -26.27619 -24.17857 -22.02234 -21.34789 -20.54309 -18.93853 -18.80634 -18.30168 -17.65303 -17.19605 -16.96870 -16.54672 -16.39964 -16.01507 -15.75806 -15.19454 -15.08626 -14.51891 -14.21811 -14.08759 -13.68841 -13.25576 -13.23823 -13.00338 -12.87043 -12.77410 -12.52471 -12.42762 -12.32276 -12.11245 -11.94955 -11.61168 -11.43557 -11.41314 -11.02027 -10.95082 -10.91090 -10.83876 -10.58574 -10.41585 -8.15546 -6.24896 1.32036 1.45153 1.47499 1.56239 1.85807 1.93612 1.95423 2.44319 3.15062 3.31933 3.51253 3.68612 3.91233 4.01408 4.02836 4.19072 4.24200 4.28480 4.41594 4.55585 4.59788 4.61374 4.69702 4.72016 4.79777 4.84081 4.91430 4.96988 4.98677 5.06858 5.23012 5.24546 5.26570 5.37164 5.41653 5.43333 5.50891 5.75040 5.77876 6.19539 6.73140 6.75572 6.90276 7.42998 8.92840 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020041 B = 0.003236 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.795953 B = 8650.347733 C = 9541.130792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.216 4.216 3 C -0.014 4.014 4 C -0.112 4.112 5 C -0.109 4.109 6 C -0.105 4.105 7 C -0.104 4.104 8 C 0.442 3.558 9 O -0.558 6.558 10 O -0.342 6.342 11 C 0.119 3.881 12 C 0.005 3.995 13 C -0.510 4.510 14 H 0.067 0.933 15 C 0.023 3.977 16 N -0.916 5.916 17 Si 0.953 3.047 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.263 1.263 21 C 0.064 3.936 22 O -0.408 6.408 23 C 0.039 3.961 24 H 0.239 0.761 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.120 0.880 34 H 0.132 0.868 35 H 0.042 0.958 36 H 0.047 0.953 37 H 0.262 0.738 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.980 7.124 -12.690 18.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.216 4.216 3 C -0.051 4.051 4 C -0.149 4.149 5 C -0.147 4.147 6 C -0.143 4.143 7 C -0.142 4.142 8 C 0.288 3.712 9 O -0.450 6.450 10 O -0.257 6.257 11 C 0.045 3.955 12 C 0.004 3.996 13 C -0.547 4.547 14 H 0.086 0.914 15 C -0.177 4.177 16 N -0.554 5.554 17 Si 0.779 3.221 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.187 1.187 21 C -0.013 4.013 22 O -0.327 6.327 23 C -0.037 4.037 24 H 0.256 0.744 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.138 0.862 34 H 0.150 0.850 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.229 6.629 -12.352 17.961 hybrid contribution -0.053 0.493 1.058 1.168 sum -11.282 7.122 -11.293 17.480 Atomic orbital electron populations 1.25698 0.97069 1.00564 1.00655 1.23910 0.95869 1.00933 1.00895 1.18871 0.83647 1.00851 1.01686 1.21478 0.95694 0.98611 0.99144 1.21542 0.94311 0.98776 1.00041 1.21395 0.91814 1.00481 1.00580 1.21565 0.97338 0.96316 0.98932 1.24913 0.80550 0.84145 0.81610 1.90590 1.57694 1.48459 1.48279 1.86512 1.25339 1.54472 1.59388 1.22418 0.96255 0.86349 0.90516 1.20534 0.89959 0.95825 0.93237 1.20953 1.32416 1.03319 0.98057 0.91435 1.25668 0.95248 1.01075 0.95659 1.70037 1.44345 1.38471 1.02568 0.85618 0.78905 0.80481 0.77064 1.20357 1.21538 1.18665 1.23490 1.00121 0.88191 0.89450 1.89622 1.93992 1.28696 1.20415 1.23872 1.00998 0.83310 0.95536 0.74410 0.88397 0.88081 0.92165 0.92607 0.90117 0.89471 0.92090 0.92925 0.86217 0.85004 0.93956 0.93464 0.92899 0.92254 0.90928 0.89685 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.62 19.25 74.32 1.43 -2.19 16 2 C -0.22 -3.89 13.34 31.13 0.42 -3.48 16 3 C -0.01 -0.19 5.70 28.79 0.16 -0.03 16 4 C -0.11 -1.72 5.17 30.59 0.16 -1.56 16 5 C -0.11 -1.56 5.21 30.59 0.16 -1.40 16 6 C -0.10 -2.29 4.50 30.59 0.14 -2.15 16 7 C -0.10 -2.52 5.81 29.85 0.17 -2.35 16 8 C 0.44 16.75 7.96 71.24 0.57 17.32 16 9 O -0.56 -24.63 15.73 21.96 0.35 -24.28 16 10 O -0.34 -14.91 9.79 -51.40 -0.50 -15.41 16 11 C 0.12 5.73 4.83 71.98 0.35 6.08 16 12 C 0.01 0.24 0.76 -52.66 -0.04 0.20 16 13 C -0.51 -25.82 8.01 25.60 0.21 -25.62 16 14 H 0.07 3.33 7.82 -2.91 -0.02 3.31 16 15 C 0.02 1.21 5.36 84.66 0.45 1.67 16 16 N -0.92 -50.13 12.09 21.45 0.26 -49.87 16 17 Si 0.95 41.14 29.54 68.60 2.03 43.17 16 18 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 19 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 21 C 0.06 3.05 7.19 63.83 0.46 3.51 16 22 O -0.41 -18.39 12.57 -148.98 -1.87 -20.26 16 23 C 0.04 1.63 7.89 63.86 0.50 2.14 16 24 H 0.24 2.16 7.80 -4.42 -0.03 2.13 16 25 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 32 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 33 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.04 2.00 7.96 -2.39 -0.02 1.98 16 36 H 0.05 2.57 7.58 -2.39 -0.02 2.55 16 37 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 38 H 0.06 2.92 8.13 -2.39 -0.02 2.90 16 39 H 0.07 3.43 8.10 -2.38 -0.02 3.41 16 40 H 0.09 3.29 8.10 -2.39 -0.02 3.27 16 41 H 0.08 3.07 8.13 -2.38 -0.02 3.05 16 Total: -1.00 -64.61 355.30 6.38 -58.24 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.98 Total: 16.29 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 5.14 Total: -7.87 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.26 Total: -49.87 kcal Atomic # 8 Polarization: -57.92 SS G_CDS: -2.03 Total: -59.96 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -64.61 6.38 -58.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344138277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.957 kcal (2) G-P(sol) polarization free energy of solvation -64.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds