Wall clock time and date at job start Tue Mar 31 2020 01:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86808 * 119.99471 * 2 1 4 4 H 1.48496 * 109.46752 * 239.99633 * 3 2 1 5 5 H 1.48494 * 109.47008 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46779 * 119.99777 * 3 2 1 7 7 C 1.37874 * 120.00600 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00099 * 170.72365 * 7 2 1 9 9 C 1.50704 * 119.99650 * 350.72624 * 7 2 1 10 10 C 1.53002 * 112.99941 * 298.08565 * 9 7 2 11 11 O 1.45198 * 109.46937 * 293.89309 * 10 9 7 12 12 C 1.34233 * 116.99641 * 181.60628 * 11 10 9 13 13 O 1.20827 * 120.00039 * 1.40447 * 12 11 10 14 14 C 1.50699 * 119.99936 * 181.39726 * 12 11 10 15 15 C 1.52304 * 115.91491 * 253.89787 * 14 12 11 16 16 C 1.52299 * 115.35813 * 185.85636 * 14 12 11 17 17 H 1.08999 * 117.30014 * 359.63827 * 16 14 12 18 18 C 1.52557 * 120.47601 * 211.09112 * 16 14 12 19 19 C 1.52873 * 110.22972 * 21.36379 * 18 16 14 20 20 C 1.53302 * 108.58446 * 305.50501 * 19 18 16 21 21 C 1.52076 * 114.63597 * 40.14256 * 14 12 11 22 22 C 1.54030 * 113.92721 * 70.01959 * 9 7 2 23 23 O 1.44178 * 85.52180 * 91.65681 * 22 9 7 24 24 C 1.44180 * 93.33372 * 24.19175 * 23 22 9 25 25 H 0.96996 * 120.00331 * 5.05213 * 1 2 3 26 26 H 1.09003 * 109.46836 * 173.89329 * 10 9 7 27 27 H 1.09005 * 109.47037 * 53.89530 * 10 9 7 28 28 H 1.09003 * 117.53698 * 1.58881 * 15 14 12 29 29 H 1.08999 * 117.54077 * 146.76026 * 15 14 12 30 30 H 1.08997 * 109.29245 * 261.14529 * 18 16 14 31 31 H 1.08994 * 109.33644 * 141.60904 * 18 16 14 32 32 H 1.09005 * 109.61865 * 185.77649 * 19 18 16 33 33 H 1.08998 * 109.77219 * 65.32791 * 19 18 16 34 34 H 1.08996 * 109.61809 * 314.71507 * 20 19 18 35 35 H 1.09004 * 109.76748 * 194.26658 * 20 19 18 36 36 H 1.08997 * 109.26766 * 285.89188 * 21 14 12 37 37 H 1.08996 * 109.26703 * 45.36477 * 21 14 12 38 38 H 1.09001 * 113.86728 * 205.80668 * 22 9 7 39 39 H 1.09006 * 113.86581 * 337.51023 * 22 9 7 40 40 H 1.09006 * 113.86480 * 221.65817 * 24 23 22 41 41 H 1.08998 * 113.97991 * 89.97168 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0047 -1.1940 0.0005 8 1 3.0740 -1.2000 -0.1502 9 6 1.2660 -2.4905 0.2114 10 6 0.5759 -2.5704 1.5746 11 8 1.5790 -2.5978 2.6240 12 6 1.1368 -2.7010 3.8872 13 8 -0.0479 -2.7919 4.1070 14 6 2.1178 -2.7037 5.0312 15 6 2.3499 -4.0493 5.7058 16 6 1.5162 -2.9649 6.4057 17 1 0.4388 -3.1215 6.4583 18 6 2.1358 -2.3416 7.6527 19 6 2.9735 -1.1205 7.2727 20 6 3.9974 -1.5412 6.2122 21 6 3.2712 -1.7243 4.8794 22 6 0.3612 -2.8931 -0.9683 23 8 1.5092 -3.6173 -1.4546 24 6 2.0922 -3.7416 -0.1418 25 1 -0.4850 0.8367 -0.0740 26 1 -0.0266 -3.4774 1.6242 27 1 -0.0663 -1.6998 1.7084 28 1 1.8190 -4.9125 5.3044 29 1 3.3465 -4.2508 6.0987 30 1 2.7719 -3.0772 8.1448 31 1 1.3431 -2.0375 8.3361 32 1 3.4930 -0.7445 8.1541 33 1 2.3272 -0.3413 6.8688 34 1 4.4642 -2.4811 6.5067 35 1 4.7606 -0.7697 6.1101 36 1 3.9723 -2.1065 4.1374 37 1 2.8842 -0.7617 4.5455 38 1 -0.4754 -3.5316 -0.6846 39 1 0.0659 -2.0573 -1.6028 40 1 3.1698 -3.5789 -0.1206 41 1 1.7857 -4.6388 0.3959 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344155867.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:18 Heat of formation + Delta-G solvation = -88.379254 kcal Electronic energy + Delta-G solvation = -22961.736433 eV Core-core repulsion = 19615.255539 eV Total energy + Delta-G solvation = -3346.480894 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.60517 -39.34162 -38.37119 -35.65918 -33.11866 -32.94808 -31.00632 -29.87210 -25.81847 -25.37161 -24.89971 -24.41270 -23.24927 -21.42058 -20.50464 -19.02131 -18.28487 -17.21504 -16.64672 -15.92117 -15.62730 -14.89853 -14.82847 -14.41706 -14.36481 -14.17927 -14.01389 -13.93114 -13.42910 -12.98102 -12.67537 -12.15783 -12.13596 -11.89364 -11.81941 -11.55586 -11.05817 -10.98037 -10.89124 -10.82367 -10.57625 -10.45729 -10.09689 -9.99414 -9.92373 -9.66447 -9.49145 -9.36099 -9.07352 -8.73522 -8.32716 -6.18352 -4.22121 2.65066 3.25816 3.29316 3.30918 3.33624 3.74750 4.31535 4.56391 4.61712 4.77241 4.88702 4.95456 4.99876 5.14399 5.17591 5.27194 5.43929 5.51112 5.60311 5.71127 5.77551 5.92004 5.96747 6.04405 6.06625 6.08904 6.15391 6.17366 6.24966 6.30652 6.33036 6.38368 6.40527 6.57976 6.97489 7.14333 7.28219 7.34514 7.37688 7.78074 8.18000 8.47394 8.74827 9.41068 10.88661 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017361 B = 0.005906 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.406455 B = 4739.430075 C = 5589.705507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.489 4.489 8 H 0.066 0.934 9 C 0.034 3.966 10 C 0.080 3.920 11 O -0.329 6.329 12 C 0.484 3.516 13 O -0.522 6.522 14 C -0.112 4.112 15 C -0.154 4.154 16 C -0.121 4.121 17 H 0.116 0.884 18 C -0.087 4.087 19 C -0.123 4.123 20 C -0.120 4.120 21 C -0.079 4.079 22 C 0.050 3.950 23 O -0.389 6.389 24 C 0.031 3.969 25 H 0.266 0.734 26 H 0.036 0.964 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.430 -4.360 13.143 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.527 4.527 8 H 0.084 0.916 9 C 0.034 3.966 10 C 0.006 3.994 11 O -0.244 6.244 12 C 0.327 3.673 13 O -0.413 6.413 14 C -0.113 4.113 15 C -0.191 4.191 16 C -0.139 4.139 17 H 0.134 0.866 18 C -0.124 4.124 19 C -0.160 4.160 20 C -0.157 4.157 21 C -0.116 4.116 22 C -0.027 4.027 23 O -0.308 6.308 24 C -0.046 4.046 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.108 0.892 28 H 0.115 0.885 29 H 0.125 0.875 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.989 -4.336 12.942 14.532 hybrid contribution -0.014 0.930 -0.012 0.930 sum 4.975 -3.406 12.929 14.266 Atomic orbital electron populations 1.69855 1.05979 1.27654 1.49114 1.24976 0.94923 0.99338 0.94341 0.86559 0.79651 0.82462 0.78900 1.20034 1.21216 1.19924 1.20558 0.94094 0.88456 1.49561 0.91551 1.21077 0.92508 0.94574 0.88461 1.23526 0.89491 1.00706 0.85643 1.86488 1.41868 1.81438 1.14572 1.22520 0.87733 0.72524 0.84511 1.90593 1.18252 1.46675 1.85750 1.20631 0.98696 1.01400 0.90603 1.23242 1.01965 0.91233 1.02658 1.22373 0.99836 1.00896 0.90787 0.86609 1.21046 0.99056 0.97289 0.95023 1.21601 0.97896 0.97820 0.98725 1.21621 0.97724 1.01568 0.94786 1.20773 0.94782 0.98235 0.97808 1.23932 0.88282 0.93560 0.96968 1.89488 1.36785 1.78033 1.26508 1.24010 0.99329 0.97445 0.83798 0.92388 0.94567 0.89247 0.88466 0.87468 0.91347 0.91358 0.91836 0.91450 0.91763 0.91303 0.90045 0.90684 0.93506 0.88416 0.90374 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.19 11.31 55.43 0.63 -23.56 16 2 C 0.07 1.78 5.23 -17.82 -0.09 1.68 16 3 Si 0.90 20.77 29.55 -169.99 -5.02 15.75 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.49 -12.96 8.19 -34.44 -0.28 -13.25 16 8 H 0.07 1.76 7.82 -52.49 -0.41 1.35 16 9 C 0.03 0.84 0.56 -154.58 -0.09 0.75 16 10 C 0.08 1.90 4.67 37.16 0.17 2.07 16 11 O -0.33 -7.28 9.78 -39.26 -0.38 -7.67 16 12 C 0.48 9.72 7.31 36.01 0.26 9.98 16 13 O -0.52 -11.66 15.76 -18.75 -0.30 -11.96 16 14 C -0.11 -1.71 2.51 -156.84 -0.39 -2.10 16 15 C -0.15 -1.88 9.28 -26.75 -0.25 -2.13 16 16 C -0.12 -1.56 5.64 -90.87 -0.51 -2.07 16 17 H 0.12 1.66 7.47 -51.93 -0.39 1.27 16 18 C -0.09 -0.87 5.82 -27.02 -0.16 -1.03 16 19 C -0.12 -1.25 5.92 -26.64 -0.16 -1.40 16 20 C -0.12 -1.26 5.70 -26.64 -0.15 -1.42 16 21 C -0.08 -1.10 5.29 -27.27 -0.14 -1.25 16 22 C 0.05 1.18 7.95 37.60 0.30 1.48 16 23 O -0.39 -9.34 12.40 -35.23 -0.44 -9.78 16 24 C 0.03 0.68 8.27 37.60 0.31 0.99 16 25 H 0.27 6.99 8.32 -40.82 -0.34 6.65 16 26 H 0.04 0.82 8.01 -51.93 -0.42 0.40 16 27 H 0.09 2.38 6.81 -51.93 -0.35 2.03 16 28 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.11 1.06 7.26 -51.93 -0.38 0.69 16 30 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 34 H 0.06 0.60 7.11 -51.93 -0.37 0.23 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 39 H 0.10 2.48 7.62 -51.93 -0.40 2.09 16 40 H 0.08 1.65 8.08 -51.93 -0.42 1.23 16 41 H 0.05 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 332.06 15.07 5.00 5.00 Total: -1.00 -29.23 332.06 -8.16 -37.39 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.47 Total: 2.50 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -1.18 Total: -7.69 kcal Atomic # 7 Polarization: -24.19 SS G_CDS: 0.63 Total: -23.56 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -1.12 Total: -29.40 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.23 -8.16 -37.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344155867.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.987 kcal (2) G-P(sol) polarization free energy of solvation -29.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds