Wall clock time and date at job start Tue Mar 31 2020 01:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86808 * 119.99471 * 2 1 4 4 H 1.48496 * 109.46752 * 239.99633 * 3 2 1 5 5 H 1.48494 * 109.47008 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46779 * 119.99777 * 3 2 1 7 7 C 1.37874 * 120.00600 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00099 * 170.72365 * 7 2 1 9 9 C 1.50704 * 119.99650 * 350.72624 * 7 2 1 10 10 C 1.53002 * 112.99941 * 298.08565 * 9 7 2 11 11 O 1.45198 * 109.46937 * 293.89309 * 10 9 7 12 12 C 1.34233 * 116.99641 * 181.60628 * 11 10 9 13 13 O 1.20827 * 120.00039 * 1.40447 * 12 11 10 14 14 C 1.50699 * 119.99936 * 181.39726 * 12 11 10 15 15 C 1.52304 * 115.91491 * 253.89787 * 14 12 11 16 16 C 1.52299 * 115.35813 * 185.85636 * 14 12 11 17 17 H 1.08999 * 117.30014 * 359.63827 * 16 14 12 18 18 C 1.52557 * 120.47601 * 211.09112 * 16 14 12 19 19 C 1.52873 * 110.22972 * 21.36379 * 18 16 14 20 20 C 1.53302 * 108.58446 * 305.50501 * 19 18 16 21 21 C 1.52076 * 114.63597 * 40.14256 * 14 12 11 22 22 C 1.54030 * 113.92721 * 70.01959 * 9 7 2 23 23 O 1.44178 * 85.52180 * 91.65681 * 22 9 7 24 24 C 1.44180 * 93.33372 * 24.19175 * 23 22 9 25 25 H 0.96996 * 120.00331 * 5.05213 * 1 2 3 26 26 H 1.09003 * 109.46836 * 173.89329 * 10 9 7 27 27 H 1.09005 * 109.47037 * 53.89530 * 10 9 7 28 28 H 1.09003 * 117.53698 * 1.58881 * 15 14 12 29 29 H 1.08999 * 117.54077 * 146.76026 * 15 14 12 30 30 H 1.08997 * 109.29245 * 261.14529 * 18 16 14 31 31 H 1.08994 * 109.33644 * 141.60904 * 18 16 14 32 32 H 1.09005 * 109.61865 * 185.77649 * 19 18 16 33 33 H 1.08998 * 109.77219 * 65.32791 * 19 18 16 34 34 H 1.08996 * 109.61809 * 314.71507 * 20 19 18 35 35 H 1.09004 * 109.76748 * 194.26658 * 20 19 18 36 36 H 1.08997 * 109.26766 * 285.89188 * 21 14 12 37 37 H 1.08996 * 109.26703 * 45.36477 * 21 14 12 38 38 H 1.09001 * 113.86728 * 205.80668 * 22 9 7 39 39 H 1.09006 * 113.86581 * 337.51023 * 22 9 7 40 40 H 1.09006 * 113.86480 * 221.65817 * 24 23 22 41 41 H 1.08998 * 113.97991 * 89.97168 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0047 -1.1940 0.0005 8 1 3.0740 -1.2000 -0.1502 9 6 1.2660 -2.4905 0.2114 10 6 0.5759 -2.5704 1.5746 11 8 1.5790 -2.5978 2.6240 12 6 1.1368 -2.7010 3.8872 13 8 -0.0479 -2.7919 4.1070 14 6 2.1178 -2.7037 5.0312 15 6 2.3499 -4.0493 5.7058 16 6 1.5162 -2.9649 6.4057 17 1 0.4388 -3.1215 6.4583 18 6 2.1358 -2.3416 7.6527 19 6 2.9735 -1.1205 7.2727 20 6 3.9974 -1.5412 6.2122 21 6 3.2712 -1.7243 4.8794 22 6 0.3612 -2.8931 -0.9683 23 8 1.5092 -3.6173 -1.4546 24 6 2.0922 -3.7416 -0.1418 25 1 -0.4850 0.8367 -0.0740 26 1 -0.0266 -3.4774 1.6242 27 1 -0.0663 -1.6998 1.7084 28 1 1.8190 -4.9125 5.3044 29 1 3.3465 -4.2508 6.0987 30 1 2.7719 -3.0772 8.1448 31 1 1.3431 -2.0375 8.3361 32 1 3.4930 -0.7445 8.1541 33 1 2.3272 -0.3413 6.8688 34 1 4.4642 -2.4811 6.5067 35 1 4.7606 -0.7697 6.1101 36 1 3.9723 -2.1065 4.1374 37 1 2.8842 -0.7617 4.5455 38 1 -0.4754 -3.5316 -0.6846 39 1 0.0659 -2.0573 -1.6028 40 1 3.1698 -3.5789 -0.1206 41 1 1.7857 -4.6388 0.3959 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344155867.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:17 Heat of formation + Delta-G solvation = -104.173042 kcal Electronic energy + Delta-G solvation = -22962.421303 eV Core-core repulsion = 19615.255539 eV Total energy + Delta-G solvation = -3347.165764 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.01009 -41.10689 -39.77631 -37.36951 -34.95846 -34.06492 -32.16713 -31.60364 -27.59054 -27.19822 -26.53573 -25.66685 -24.64666 -22.40937 -21.78105 -20.93360 -19.46815 -18.56250 -18.46163 -17.69399 -17.38065 -16.77913 -16.41668 -16.23247 -16.02707 -15.52403 -15.03223 -14.89718 -14.49118 -14.45655 -14.21172 -13.87791 -13.70681 -13.33936 -12.99162 -12.91616 -12.85343 -12.68731 -12.37921 -11.96917 -11.89828 -11.84715 -11.70580 -11.51544 -11.31196 -11.15485 -10.99247 -10.82650 -10.72496 -10.68188 -10.25618 -8.21741 -6.31191 1.11406 1.39152 1.41090 1.47852 1.77751 2.37032 2.64063 2.96020 3.17049 3.45892 3.61277 3.66115 3.82964 4.07602 4.11835 4.20132 4.26319 4.32550 4.41227 4.42430 4.50905 4.55421 4.58479 4.69133 4.73330 4.76006 4.96049 5.03493 5.09035 5.11844 5.18409 5.24656 5.27611 5.31731 5.38439 5.43340 5.47554 5.51547 5.64426 5.70094 6.19277 6.67740 6.80712 7.34413 8.84048 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017361 B = 0.005906 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.406455 B = 4739.430075 C = 5589.705507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.950 3.050 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.505 4.505 8 H 0.061 0.939 9 C 0.019 3.981 10 C 0.092 3.908 11 O -0.337 6.337 12 C 0.476 3.524 13 O -0.553 6.553 14 C -0.137 4.137 15 C -0.130 4.130 16 C -0.117 4.117 17 H 0.095 0.905 18 C -0.082 4.082 19 C -0.123 4.123 20 C -0.112 4.112 21 C -0.076 4.076 22 C 0.054 3.946 23 O -0.402 6.402 24 C 0.042 3.958 25 H 0.265 0.735 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.142 0.858 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.446 -5.143 15.249 17.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.018 3.982 10 C 0.018 3.982 11 O -0.252 6.252 12 C 0.321 3.679 13 O -0.445 6.445 14 C -0.138 4.138 15 C -0.166 4.166 16 C -0.135 4.135 17 H 0.113 0.887 18 C -0.120 4.120 19 C -0.161 4.161 20 C -0.149 4.149 21 C -0.114 4.114 22 C -0.023 4.023 23 O -0.321 6.321 24 C -0.035 4.035 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.112 0.888 29 H 0.160 0.840 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.019 -5.127 15.052 17.381 hybrid contribution -0.687 1.141 -0.658 1.486 sum 6.332 -3.986 14.394 16.222 Atomic orbital electron populations 1.69960 1.07055 1.28099 1.49788 1.25646 0.95633 1.02176 0.94138 0.85713 0.78619 0.79010 0.79089 1.19360 1.21039 1.19466 1.20796 0.94020 0.89802 1.49619 0.92123 1.21153 0.93296 0.95049 0.88714 1.23162 0.89402 0.99330 0.86279 1.86497 1.41444 1.81848 1.15419 1.23627 0.88524 0.71068 0.84675 1.90564 1.19896 1.48124 1.85960 1.20791 0.98772 1.04542 0.89661 1.23441 1.03451 0.89456 1.00262 1.22495 0.99234 1.01126 0.90637 0.88654 1.21114 0.99640 0.97727 0.93471 1.21619 0.97645 0.97322 0.99480 1.21623 0.97594 1.03181 0.92522 1.20761 0.94364 0.96223 1.00041 1.23845 0.88902 0.93350 0.96223 1.89460 1.36968 1.77990 1.27683 1.24090 0.99515 0.97203 0.82670 0.92578 0.93813 0.92828 0.88824 0.83966 0.88486 0.90584 0.89177 0.93725 0.89394 0.90292 0.90617 0.93768 0.91478 0.90680 0.89547 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.01 11.31 21.45 0.24 -50.77 16 2 C 0.02 1.32 5.23 84.65 0.44 1.76 16 3 Si 0.95 43.07 29.55 68.60 2.03 45.10 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.51 -27.17 8.19 25.60 0.21 -26.96 16 8 H 0.06 3.25 7.82 -2.91 -0.02 3.23 16 9 C 0.02 0.91 0.56 -52.23 -0.03 0.88 16 10 C 0.09 4.50 4.67 71.98 0.34 4.84 16 11 O -0.34 -15.24 9.78 -51.44 -0.50 -15.75 16 12 C 0.48 19.51 7.31 71.24 0.52 20.03 16 13 O -0.55 -25.56 15.76 21.96 0.35 -25.21 16 14 C -0.14 -4.06 2.51 -53.69 -0.13 -4.19 16 15 C -0.13 -2.81 9.28 30.58 0.28 -2.52 16 16 C -0.12 -2.81 5.64 -10.95 -0.06 -2.88 16 17 H 0.10 2.70 7.47 -2.39 -0.02 2.68 16 18 C -0.08 -1.37 5.82 30.41 0.18 -1.19 16 19 C -0.12 -2.13 5.92 30.65 0.18 -1.95 16 20 C -0.11 -2.02 5.70 30.65 0.17 -1.85 16 21 C -0.08 -2.08 5.29 30.25 0.16 -1.92 16 22 C 0.05 2.59 7.95 72.27 0.57 3.16 16 23 O -0.40 -19.08 12.40 -148.98 -1.85 -20.92 16 24 C 0.04 1.79 8.27 72.27 0.60 2.38 16 25 H 0.27 14.30 8.32 -92.71 -0.77 13.52 16 26 H 0.04 2.01 8.01 -2.39 -0.02 1.99 16 27 H 0.05 2.98 6.81 -2.38 -0.02 2.96 16 28 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.14 2.10 7.26 -2.39 -0.02 2.09 16 30 H 0.10 1.12 8.06 -2.39 -0.02 1.10 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.04 0.97 8.05 -2.39 -0.02 0.95 16 34 H 0.09 1.21 7.11 -2.39 -0.02 1.19 16 35 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 2.91 8.04 -2.39 -0.02 2.89 16 39 H 0.07 3.92 7.62 -2.38 -0.02 3.90 16 40 H 0.09 3.54 8.08 -2.38 -0.02 3.52 16 41 H 0.08 2.97 8.10 -2.39 -0.02 2.95 16 Total: -1.00 -64.95 332.06 4.71 -60.24 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 1.01 Total: 17.71 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 3.43 Total: -10.40 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.24 Total: -50.77 kcal Atomic # 8 Polarization: -59.88 SS G_CDS: -2.00 Total: -61.88 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -64.95 4.71 -60.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344155867.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.929 kcal (2) G-P(sol) polarization free energy of solvation -64.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds