Wall clock time and date at job start Tue Mar 31 2020 01:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00048 * 2 1 4 4 H 1.48496 * 109.46998 * 275.11840 * 3 2 1 5 5 H 1.48500 * 109.47245 * 35.11838 * 3 2 1 6 6 H 1.48500 * 109.47224 * 155.11773 * 3 2 1 7 7 C 1.37876 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00020 * 0.74257 * 7 2 1 9 9 C 1.50705 * 120.00015 * 180.73979 * 7 2 1 10 10 C 1.52997 * 112.99684 * 293.85629 * 9 7 2 11 11 O 1.45195 * 109.47395 * 302.19766 * 10 9 7 12 12 C 1.34228 * 117.00320 * 181.92435 * 11 10 9 13 13 O 1.20832 * 119.99791 * 355.45553 * 12 11 10 14 14 C 1.50699 * 120.00241 * 175.44843 * 12 11 10 15 15 C 1.52303 * 115.91133 * 96.12263 * 14 12 11 16 16 C 1.52064 * 115.92962 * 164.40957 * 14 12 11 17 17 H 1.09005 * 117.25601 * 0.64046 * 16 14 12 18 18 C 1.52708 * 120.52371 * 149.26028 * 16 14 12 19 19 C 1.52883 * 110.15466 * 338.53529 * 18 16 14 20 20 C 1.53297 * 108.57966 * 54.51517 * 19 18 16 21 21 C 1.51672 * 108.14837 * 285.45676 * 20 19 18 22 22 C 1.54038 * 113.81377 * 65.68034 * 9 7 2 23 23 O 1.44441 * 85.42409 * 91.80709 * 22 9 7 24 24 C 1.44177 * 93.38000 * 24.08690 * 23 22 9 25 25 H 0.97001 * 119.99619 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47134 * 62.20721 * 10 9 7 27 27 H 1.09001 * 109.46930 * 182.20151 * 10 9 7 28 28 H 1.08996 * 117.54080 * 213.90464 * 15 14 12 29 29 H 1.09001 * 117.54010 * 359.08235 * 15 14 12 30 30 H 1.09002 * 109.35568 * 98.74091 * 18 16 14 31 31 H 1.09002 * 109.35990 * 218.46055 * 18 16 14 32 32 H 1.08992 * 109.61802 * 174.24406 * 19 18 16 33 33 H 1.08997 * 109.61319 * 294.60848 * 19 18 16 34 34 H 1.08997 * 109.62141 * 45.29117 * 20 19 18 35 35 H 1.09002 * 109.61536 * 165.64930 * 20 19 18 36 36 H 1.08998 * 109.72238 * 294.55050 * 21 20 19 37 37 H 1.09007 * 108.14737 * 175.49228 * 21 20 19 38 38 H 1.09000 * 113.86109 * 205.91726 * 22 9 7 39 39 H 1.09006 * 113.86490 * 337.62500 * 22 9 7 40 40 H 1.09001 * 113.86698 * 221.75951 * 24 23 22 41 41 H 1.09008 * 113.86230 * 90.05899 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3885 2.1088 -1.3945 5 1 1.5050 2.6190 0.8054 6 1 3.5967 1.4113 0.5891 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 -0.0112 9 6 3.5115 -1.1942 0.0174 10 6 4.1236 -0.6169 -1.2605 11 8 3.6540 -1.3740 -2.4070 12 6 4.1320 -1.0180 -3.6097 13 8 4.8522 -0.0531 -3.7120 14 6 3.7707 -1.8216 -4.8322 15 6 2.6015 -1.2945 -5.6535 16 6 4.0412 -1.1534 -6.1711 17 1 4.4822 -0.1567 -6.1515 18 6 4.3976 -1.9903 -7.3977 19 6 4.9378 -3.3539 -6.9662 20 6 3.9122 -4.0139 -6.0374 21 6 3.9804 -3.3210 -4.6899 22 6 4.1190 -0.6216 1.3119 23 8 4.1087 -1.9868 1.7835 24 6 4.1285 -2.5372 0.4511 25 1 -0.4849 0.8401 -0.0004 26 1 3.8257 0.4262 -1.3669 27 1 5.2103 -0.6804 -1.2036 28 1 1.9592 -2.0263 -6.1435 29 1 2.1020 -0.3931 -5.2985 30 1 3.5067 -2.1319 -8.0096 31 1 5.1578 -1.4709 -7.9811 32 1 5.0930 -3.9806 -7.8443 33 1 5.8824 -3.2228 -6.4384 34 1 2.9133 -3.9066 -6.4601 35 1 4.1495 -5.0717 -5.9232 36 1 4.9509 -3.5065 -4.2296 37 1 3.1969 -3.7352 -4.0552 38 1 5.1188 -0.2068 1.1838 39 1 3.4477 0.0404 1.8590 40 1 3.4648 -3.3914 0.3168 41 1 5.1313 -2.7086 0.0596 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344155868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:20 Heat of formation + Delta-G solvation = -75.684740 kcal Electronic energy + Delta-G solvation = -23020.147237 eV Core-core repulsion = 19674.216818 eV Total energy + Delta-G solvation = -3345.930419 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.74864 -39.65829 -38.57761 -35.86813 -33.24553 -32.87676 -31.16794 -30.53759 -26.00752 -25.79427 -24.91326 -24.49762 -23.50128 -21.43793 -20.68070 -19.11520 -18.37911 -17.31198 -16.94146 -16.23144 -15.97905 -15.42387 -15.01474 -14.62143 -14.51376 -14.14819 -14.02424 -13.89576 -13.50312 -13.14863 -12.88980 -12.71299 -12.29870 -12.12691 -11.94831 -11.76154 -11.10561 -11.00326 -10.93628 -10.66626 -10.61870 -10.42451 -10.36850 -10.19497 -10.04024 -9.71598 -9.67069 -9.56004 -9.18603 -8.80446 -8.57372 -6.22089 -4.22016 2.52750 3.05564 3.14564 3.19243 3.27411 3.68813 4.24446 4.52421 4.56532 4.58524 4.69098 4.85129 4.92777 5.06546 5.12163 5.15803 5.37910 5.43587 5.48391 5.57244 5.66969 5.72972 5.76773 5.85202 5.90863 5.96574 5.97002 6.01206 6.02744 6.04030 6.10343 6.18966 6.24385 6.28042 6.51064 6.56518 6.94224 6.99821 7.07023 7.52723 8.24681 8.36727 8.82110 9.37059 10.90320 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.005581 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.734067 B = 5015.794577 C = 5463.648164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.079 3.921 3 Si 0.855 3.145 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.251 1.251 7 C -0.481 4.481 8 H 0.085 0.915 9 C -0.008 4.008 10 C 0.072 3.928 11 O -0.315 6.315 12 C 0.485 3.515 13 O -0.522 6.522 14 C -0.112 4.112 15 C -0.152 4.152 16 C -0.122 4.122 17 H 0.114 0.886 18 C -0.087 4.087 19 C -0.123 4.123 20 C -0.120 4.120 21 C -0.078 4.078 22 C 0.034 3.966 23 O -0.377 6.377 24 C 0.045 3.955 25 H 0.266 0.734 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.463 -5.187 -12.876 16.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.124 4.124 3 Si 0.683 3.317 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.176 1.176 7 C -0.518 4.518 8 H 0.103 0.897 9 C -0.009 4.009 10 C -0.002 4.002 11 O -0.229 6.229 12 C 0.328 3.672 13 O -0.413 6.413 14 C -0.113 4.113 15 C -0.189 4.189 16 C -0.141 4.141 17 H 0.132 0.868 18 C -0.124 4.124 19 C -0.160 4.160 20 C -0.157 4.157 21 C -0.115 4.115 22 C -0.043 4.043 23 O -0.296 6.296 24 C -0.031 4.031 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.460 -4.889 -12.575 15.925 hybrid contribution 0.441 1.434 -0.060 1.502 sum 8.901 -3.455 -12.635 15.837 Atomic orbital electron populations 1.69858 1.06026 1.27063 1.49431 1.24893 0.94700 0.98601 0.94197 0.87427 0.81096 0.84580 0.78584 1.20459 1.21055 1.17563 1.20354 0.85672 0.95080 1.50718 0.89671 1.21683 0.98722 0.92441 0.88099 1.23729 0.96567 0.95219 0.84674 1.86596 1.63963 1.57776 1.14572 1.22654 0.76759 0.82626 0.85122 1.90598 1.35966 1.27718 1.86976 1.20519 1.06706 0.95760 0.88314 1.23282 0.90799 1.03224 1.01562 1.22366 0.98748 1.00898 0.92043 0.86819 1.21081 1.01151 0.95137 0.95035 1.21618 0.99047 0.95951 0.99403 1.21415 0.99763 0.99338 0.95177 1.20534 1.03163 0.89621 0.98198 1.24456 0.98318 0.85720 0.95833 1.89594 1.95468 1.18835 1.25707 1.23887 0.98192 0.98460 0.82597 0.92348 0.92553 0.93089 0.87246 0.88132 0.91191 0.91359 0.91823 0.91597 0.91422 0.91176 0.91122 0.89989 0.92543 0.89308 0.89471 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 2 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 3 Si 0.86 20.81 23.45 -169.99 -3.99 16.82 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.25 -5.53 4.80 56.52 0.27 -5.26 16 7 C -0.48 -13.09 8.63 -34.44 -0.30 -13.39 16 8 H 0.09 2.53 8.05 -52.49 -0.42 2.11 16 9 C -0.01 -0.19 0.48 -154.58 -0.07 -0.26 16 10 C 0.07 1.58 4.36 37.16 0.16 1.75 16 11 O -0.31 -6.78 9.84 -39.25 -0.39 -7.16 16 12 C 0.49 9.45 7.19 36.01 0.26 9.71 16 13 O -0.52 -11.20 15.95 -18.76 -0.30 -11.50 16 14 C -0.11 -1.67 2.50 -156.97 -0.39 -2.07 16 15 C -0.15 -2.04 9.29 -26.75 -0.25 -2.29 16 16 C -0.12 -1.56 5.65 -90.91 -0.51 -2.08 16 17 H 0.11 1.60 7.59 -51.93 -0.39 1.21 16 18 C -0.09 -0.83 5.83 -26.94 -0.16 -0.98 16 19 C -0.12 -1.10 5.92 -26.64 -0.16 -1.26 16 20 C -0.12 -1.14 5.70 -27.25 -0.16 -1.30 16 21 C -0.08 -0.98 5.29 -27.88 -0.15 -1.12 16 22 C 0.03 0.74 6.19 37.64 0.23 0.97 16 23 O -0.38 -8.51 12.41 -35.23 -0.44 -8.94 16 24 C 0.05 0.93 8.35 37.64 0.31 1.25 16 25 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.06 1.33 4.51 -51.93 -0.23 1.09 16 27 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 28 H 0.11 1.22 7.26 -51.93 -0.38 0.84 16 29 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 30 H 0.07 0.59 8.06 -51.93 -0.42 0.17 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.64 8.03 -51.93 -0.42 0.22 16 34 H 0.07 0.62 7.11 -51.93 -0.37 0.25 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 39 H 0.09 1.99 6.09 -51.93 -0.32 1.68 16 40 H 0.09 1.75 8.09 -51.93 -0.42 1.33 16 41 H 0.06 1.02 8.09 -51.92 -0.42 0.60 16 LS Contribution 321.72 15.07 4.85 4.85 Total: -1.00 -31.21 321.72 -7.19 -38.40 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.43 Total: 2.10 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -1.27 Total: -8.96 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.77 Total: -25.61 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -1.12 Total: -27.61 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -3.99 Total: 16.82 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.21 -7.19 -38.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344155868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.282 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds