Wall clock time and date at job start Tue Mar 31 2020 01:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00048 * 2 1 4 4 H 1.48496 * 109.46998 * 275.11840 * 3 2 1 5 5 H 1.48500 * 109.47245 * 35.11838 * 3 2 1 6 6 H 1.48500 * 109.47224 * 155.11773 * 3 2 1 7 7 C 1.37876 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00020 * 0.74257 * 7 2 1 9 9 C 1.50705 * 120.00015 * 180.73979 * 7 2 1 10 10 C 1.52997 * 112.99684 * 293.85629 * 9 7 2 11 11 O 1.45195 * 109.47395 * 302.19766 * 10 9 7 12 12 C 1.34228 * 117.00320 * 181.92435 * 11 10 9 13 13 O 1.20832 * 119.99791 * 355.45553 * 12 11 10 14 14 C 1.50699 * 120.00241 * 175.44843 * 12 11 10 15 15 C 1.52303 * 115.91133 * 96.12263 * 14 12 11 16 16 C 1.52064 * 115.92962 * 164.40957 * 14 12 11 17 17 H 1.09005 * 117.25601 * 0.64046 * 16 14 12 18 18 C 1.52708 * 120.52371 * 149.26028 * 16 14 12 19 19 C 1.52883 * 110.15466 * 338.53529 * 18 16 14 20 20 C 1.53297 * 108.57966 * 54.51517 * 19 18 16 21 21 C 1.51672 * 108.14837 * 285.45676 * 20 19 18 22 22 C 1.54038 * 113.81377 * 65.68034 * 9 7 2 23 23 O 1.44441 * 85.42409 * 91.80709 * 22 9 7 24 24 C 1.44177 * 93.38000 * 24.08690 * 23 22 9 25 25 H 0.97001 * 119.99619 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47134 * 62.20721 * 10 9 7 27 27 H 1.09001 * 109.46930 * 182.20151 * 10 9 7 28 28 H 1.08996 * 117.54080 * 213.90464 * 15 14 12 29 29 H 1.09001 * 117.54010 * 359.08235 * 15 14 12 30 30 H 1.09002 * 109.35568 * 98.74091 * 18 16 14 31 31 H 1.09002 * 109.35990 * 218.46055 * 18 16 14 32 32 H 1.08992 * 109.61802 * 174.24406 * 19 18 16 33 33 H 1.08997 * 109.61319 * 294.60848 * 19 18 16 34 34 H 1.08997 * 109.62141 * 45.29117 * 20 19 18 35 35 H 1.09002 * 109.61536 * 165.64930 * 20 19 18 36 36 H 1.08998 * 109.72238 * 294.55050 * 21 20 19 37 37 H 1.09007 * 108.14737 * 175.49228 * 21 20 19 38 38 H 1.09000 * 113.86109 * 205.91726 * 22 9 7 39 39 H 1.09006 * 113.86490 * 337.62500 * 22 9 7 40 40 H 1.09001 * 113.86698 * 221.75951 * 24 23 22 41 41 H 1.09008 * 113.86230 * 90.05899 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3885 2.1088 -1.3945 5 1 1.5050 2.6190 0.8054 6 1 3.5967 1.4113 0.5891 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 -0.0112 9 6 3.5115 -1.1942 0.0174 10 6 4.1236 -0.6169 -1.2605 11 8 3.6540 -1.3740 -2.4070 12 6 4.1320 -1.0180 -3.6097 13 8 4.8522 -0.0531 -3.7120 14 6 3.7707 -1.8216 -4.8322 15 6 2.6015 -1.2945 -5.6535 16 6 4.0412 -1.1534 -6.1711 17 1 4.4822 -0.1567 -6.1515 18 6 4.3976 -1.9903 -7.3977 19 6 4.9378 -3.3539 -6.9662 20 6 3.9122 -4.0139 -6.0374 21 6 3.9804 -3.3210 -4.6899 22 6 4.1190 -0.6216 1.3119 23 8 4.1087 -1.9868 1.7835 24 6 4.1285 -2.5372 0.4511 25 1 -0.4849 0.8401 -0.0004 26 1 3.8257 0.4262 -1.3669 27 1 5.2103 -0.6804 -1.2036 28 1 1.9592 -2.0263 -6.1435 29 1 2.1020 -0.3931 -5.2985 30 1 3.5067 -2.1319 -8.0096 31 1 5.1578 -1.4709 -7.9811 32 1 5.0930 -3.9806 -7.8443 33 1 5.8824 -3.2228 -6.4384 34 1 2.9133 -3.9066 -6.4601 35 1 4.1495 -5.0717 -5.9232 36 1 4.9509 -3.5065 -4.2296 37 1 3.1969 -3.7352 -4.0552 38 1 5.1188 -0.2068 1.1838 39 1 3.4477 0.0404 1.8590 40 1 3.4648 -3.3914 0.3168 41 1 5.1313 -2.7086 0.0596 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344155868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:20 Heat of formation + Delta-G solvation = -95.310376 kcal Electronic energy + Delta-G solvation = -23020.998268 eV Core-core repulsion = 19674.216818 eV Total energy + Delta-G solvation = -3346.781450 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.12666 -41.29562 -39.89804 -37.48420 -34.94780 -34.14717 -32.64117 -31.84677 -27.70614 -27.46796 -26.56827 -25.75574 -24.75811 -22.41923 -21.90869 -20.96217 -19.49997 -18.79701 -18.54424 -17.98317 -17.73280 -17.08923 -16.52872 -16.36250 -15.80566 -15.57740 -15.05404 -14.97971 -14.92336 -14.54419 -14.40481 -14.22928 -13.71974 -13.46297 -13.04036 -12.97996 -12.87701 -12.55006 -12.24186 -12.11659 -11.98729 -11.95782 -11.76150 -11.59776 -11.45878 -11.20347 -11.05400 -10.88872 -10.81262 -10.70893 -10.39666 -8.39090 -6.42514 1.02889 1.19010 1.22413 1.29635 1.60886 2.19375 2.58403 2.76464 3.09738 3.37669 3.53664 3.60426 3.73212 3.83210 3.97195 4.06764 4.18800 4.21381 4.30607 4.32378 4.36390 4.38066 4.49880 4.57166 4.69138 4.72009 4.75037 4.87812 4.94551 5.03851 5.05599 5.22008 5.22690 5.28412 5.30380 5.32709 5.38750 5.47557 5.52837 5.53867 6.18402 6.59402 6.70178 7.19773 8.77134 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.005581 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.734067 B = 5015.794577 C = 5463.648164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.027 3.973 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.212 1.212 7 C -0.479 4.479 8 H 0.043 0.957 9 C -0.024 4.024 10 C 0.073 3.927 11 O -0.332 6.332 12 C 0.478 3.522 13 O -0.547 6.547 14 C -0.130 4.130 15 C -0.153 4.153 16 C -0.107 4.107 17 H 0.096 0.904 18 C -0.084 4.084 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.075 4.075 22 C 0.037 3.963 23 O -0.395 6.395 24 C 0.055 3.945 25 H 0.267 0.733 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.136 0.864 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.777 -5.790 -14.429 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.172 4.172 3 Si 0.732 3.268 4 H -0.218 1.218 5 H -0.209 1.209 6 H -0.135 1.135 7 C -0.517 4.517 8 H 0.061 0.939 9 C -0.025 4.025 10 C -0.001 4.001 11 O -0.246 6.246 12 C 0.324 3.676 13 O -0.438 6.438 14 C -0.131 4.131 15 C -0.190 4.190 16 C -0.125 4.125 17 H 0.114 0.886 18 C -0.121 4.121 19 C -0.157 4.157 20 C -0.152 4.152 21 C -0.112 4.112 22 C -0.040 4.040 23 O -0.314 6.314 24 C -0.022 4.022 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.154 0.846 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.800 -5.511 -14.121 18.613 hybrid contribution -0.314 1.555 0.406 1.638 sum 10.487 -3.956 -13.715 17.712 Atomic orbital electron populations 1.69996 1.07841 1.27934 1.51793 1.25621 0.95316 1.02090 0.94150 0.86579 0.81921 0.80256 0.78019 1.21760 1.20896 1.13480 1.20487 0.88347 0.93340 1.49519 0.93856 1.21673 0.96104 0.95138 0.89568 1.23599 0.97977 0.94095 0.84389 1.86611 1.64635 1.57981 1.15405 1.23589 0.75950 0.82656 0.85454 1.90567 1.37124 1.28940 1.87206 1.20765 1.08452 0.96787 0.87112 1.23399 0.91399 1.02937 1.01279 1.22481 0.97533 1.00453 0.92018 0.88560 1.21164 1.02470 0.95023 0.93419 1.21620 0.98247 0.95782 1.00094 1.21428 1.00575 0.99924 0.93278 1.20568 1.02512 0.88021 1.00147 1.24531 0.99976 0.85513 0.93932 1.89578 1.95748 1.19342 1.26721 1.23999 0.99919 0.96909 0.81333 0.92383 0.94299 0.90266 0.84563 0.90311 0.89302 0.90114 0.89280 0.92457 0.90612 0.89469 0.91357 0.91297 0.88614 0.90362 0.89991 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.92 13.96 21.45 0.30 -57.63 16 2 C 0.03 1.54 5.45 84.65 0.46 2.00 16 3 Si 0.91 43.23 23.45 68.60 1.61 44.84 16 4 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.21 -8.67 4.80 99.48 0.48 -8.19 16 7 C -0.48 -26.78 8.63 25.60 0.22 -26.56 16 8 H 0.04 2.71 8.05 -2.91 -0.02 2.68 16 9 C -0.02 -1.07 0.48 -52.23 -0.02 -1.09 16 10 C 0.07 3.13 4.36 71.98 0.31 3.44 16 11 O -0.33 -14.29 9.84 -51.40 -0.51 -14.80 16 12 C 0.48 18.63 7.19 71.24 0.51 19.14 16 13 O -0.55 -23.39 15.95 21.95 0.35 -23.04 16 14 C -0.13 -3.81 2.50 -53.78 -0.13 -3.94 16 15 C -0.15 -4.01 9.29 30.58 0.28 -3.72 16 16 C -0.11 -2.57 5.65 -10.98 -0.06 -2.64 16 17 H 0.10 2.67 7.59 -2.38 -0.02 2.65 16 18 C -0.08 -1.32 5.83 30.46 0.18 -1.14 16 19 C -0.12 -1.73 5.92 30.65 0.18 -1.55 16 20 C -0.11 -1.84 5.70 30.26 0.17 -1.67 16 21 C -0.08 -1.78 5.29 29.85 0.16 -1.62 16 22 C 0.04 1.52 6.19 72.30 0.45 1.97 16 23 O -0.39 -17.05 12.41 -148.98 -1.85 -18.90 16 24 C 0.05 2.15 8.35 72.29 0.60 2.75 16 25 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 26 H 0.04 1.79 4.51 -2.39 -0.01 1.78 16 27 H 0.08 2.91 8.13 -2.39 -0.02 2.89 16 28 H 0.14 2.76 7.26 -2.39 -0.02 2.74 16 29 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.09 1.12 8.06 -2.39 -0.02 1.11 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.94 8.03 -2.39 -0.02 0.92 16 34 H 0.08 1.12 7.11 -2.39 -0.02 1.10 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.10 3.21 8.10 -2.39 -0.02 3.19 16 39 H 0.08 3.35 6.09 -2.38 -0.01 3.34 16 40 H 0.08 3.26 8.09 -2.39 -0.02 3.24 16 41 H 0.10 3.07 8.09 -2.38 -0.02 3.05 16 Total: -1.00 -70.32 321.72 4.00 -66.31 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.79 Total: 17.85 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 3.31 Total: -14.64 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.30 Total: -57.63 kcal Atomic # 8 Polarization: -54.73 SS G_CDS: -2.00 Total: -56.73 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.61 Total: 44.84 kcal Total: -70.32 4.00 -66.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344155868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.998 kcal (2) G-P(sol) polarization free energy of solvation -70.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds