Wall clock time and date at job start Tue Mar 31 2020 01:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47510 * 2 1 4 4 C 1.52996 * 109.47271 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46953 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.46952 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47298 * 180.02562 * 6 5 4 8 8 O 1.20833 * 119.99655 * 359.97438 * 7 6 5 9 9 O 1.34222 * 120.00432 * 180.27351 * 7 6 5 10 10 C 1.45201 * 117.00137 * 179.71953 * 9 7 6 11 11 H 1.08993 * 109.47491 * 330.00073 * 10 9 7 12 12 C 1.50706 * 109.46887 * 90.00045 * 10 9 7 13 13 H 1.08001 * 119.99914 * 239.99856 * 12 10 9 14 14 C 1.37878 * 119.99966 * 60.00384 * 12 10 9 15 15 N 1.31515 * 119.99763 * 179.97438 * 14 12 10 16 16 Si 1.86801 * 120.00110 * 359.97438 * 14 12 10 17 17 H 1.48500 * 109.47161 * 90.00506 * 16 14 12 18 18 H 1.48502 * 109.47174 * 210.00360 * 16 14 12 19 19 H 1.48499 * 109.47270 * 330.00657 * 16 14 12 20 20 C 1.50704 * 109.46907 * 209.99697 * 10 9 7 21 21 C 1.34516 * 125.78433 * 145.00355 * 20 10 9 22 22 C 1.41385 * 106.84086 * 179.97438 * 21 20 10 23 23 C 1.34521 * 106.83744 * 0.02562 * 22 21 20 24 24 O 1.34299 * 125.79250 * 324.69650 * 20 10 9 25 25 H 1.08996 * 109.47100 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46638 * 299.99899 * 1 2 3 27 27 H 1.08998 * 109.46846 * 59.99446 * 1 2 3 28 28 H 1.09000 * 109.47322 * 240.00043 * 2 1 3 29 29 H 1.08998 * 109.47285 * 120.00247 * 2 1 3 30 30 H 1.09008 * 109.46645 * 60.00002 * 3 2 1 31 31 H 1.08998 * 109.47049 * 300.00392 * 3 2 1 32 32 H 1.09000 * 109.47439 * 60.00118 * 4 3 2 33 33 H 1.08998 * 109.47408 * 300.00176 * 4 3 2 34 34 H 1.08994 * 109.47101 * 60.00033 * 5 4 3 35 35 H 1.09006 * 109.46726 * 299.99825 * 5 4 3 36 36 H 1.09000 * 109.47764 * 59.99520 * 6 5 4 37 37 H 1.09006 * 109.46938 * 299.99298 * 6 5 4 38 38 H 0.97002 * 119.99321 * 179.97438 * 15 14 12 39 39 H 1.07996 * 126.58313 * 0.03006 * 21 20 10 40 40 H 1.07992 * 126.58013 * 179.97438 * 22 21 20 41 41 H 1.07996 * 125.78786 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 6 5.6101 2.8849 0.0013 7 6 6.1125 4.3056 0.0026 8 8 5.3273 5.2241 0.0029 9 8 7.4321 4.5509 -0.0028 10 6 7.8438 5.9433 -0.0075 11 1 7.0916 6.5429 -0.5200 12 6 7.9914 6.4283 1.4117 13 1 7.3920 7.2542 1.7652 14 6 8.8917 5.8176 2.2589 15 7 9.0208 6.2412 3.4972 16 14 9.9281 4.3887 1.6476 17 1 11.1968 4.9066 1.0755 18 1 10.2314 3.4772 2.7800 19 1 9.1799 3.6465 0.6014 20 6 9.1637 6.0744 -0.7229 21 6 9.5427 7.1120 -1.4905 22 6 10.8445 6.8210 -1.9591 23 6 11.1829 5.6226 -1.4502 24 8 10.1633 5.1779 -0.6976 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6768 1.9563 -0.8899 32 1 3.9338 0.9285 -0.8891 33 1 3.9331 0.9287 0.8908 34 1 3.7165 3.3985 0.8912 35 1 3.7172 3.3990 -0.8888 36 1 5.9735 2.3714 -0.8888 37 1 5.9734 2.3707 0.8912 38 1 9.6539 5.8113 4.0932 39 1 8.9640 7.9979 -1.7067 40 1 11.4505 7.4413 -2.6027 41 1 12.1180 5.1080 -1.6146 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344936372.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:24 Heat of formation + Delta-G solvation = -91.369212 kcal Electronic energy + Delta-G solvation = -21880.243174 eV Core-core repulsion = 18533.632626 eV Total energy + Delta-G solvation = -3346.610549 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.94971 -39.46499 -36.65274 -35.65147 -33.33327 -32.95992 -32.34948 -30.58617 -29.26625 -26.87428 -25.07340 -22.94068 -21.68203 -21.16949 -21.00253 -19.93940 -19.64752 -17.64885 -17.00304 -16.38701 -16.09146 -15.77070 -15.36518 -15.09078 -14.44058 -14.08334 -13.86736 -13.58357 -13.07782 -13.01415 -12.66211 -12.49104 -12.33555 -12.16530 -11.85857 -11.63344 -11.50611 -11.33889 -11.11499 -10.93071 -10.76228 -10.68295 -10.65528 -10.46685 -10.21826 -9.68280 -9.36916 -9.22177 -9.05167 -8.68355 -7.69309 -6.34368 -4.48103 2.41256 3.07494 3.17174 3.24210 3.42533 3.49734 3.79550 4.12627 4.38824 4.66359 4.79486 4.92327 5.02766 5.11031 5.17449 5.27641 5.41838 5.45607 5.59700 5.62583 5.64264 5.70039 5.73226 5.78910 5.91079 5.92260 5.98423 6.07393 6.17076 6.21668 6.27719 6.36419 6.45505 6.47718 6.59038 6.83286 7.11881 7.23300 7.53631 7.85532 8.16002 8.62721 8.77525 9.25354 10.72787 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023203 B = 0.003906 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.464276 B = 7166.177812 C = 7558.318534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.108 4.108 6 C -0.118 4.118 7 C 0.458 3.542 8 O -0.520 6.520 9 O -0.359 6.359 10 C 0.250 3.750 11 H 0.090 0.910 12 C -0.536 4.536 13 H 0.090 0.910 14 C 0.087 3.913 15 N -0.868 5.868 16 Si 0.887 3.113 17 H -0.273 1.273 18 H -0.298 1.298 19 H -0.219 1.219 20 C 0.034 3.966 21 C -0.230 4.230 22 C -0.205 4.205 23 C -0.077 4.077 24 O -0.164 6.164 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.271 0.729 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.503 -10.428 -9.124 15.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.157 4.157 5 C -0.145 4.145 6 C -0.156 4.156 7 C 0.301 3.699 8 O -0.410 6.410 9 O -0.276 6.276 10 C 0.197 3.803 11 H 0.108 0.892 12 C -0.571 4.571 13 H 0.108 0.892 14 C -0.121 4.121 15 N -0.503 5.503 16 Si 0.720 3.280 17 H -0.201 1.201 18 H -0.227 1.227 19 H -0.144 1.144 20 C -0.016 4.016 21 C -0.249 4.249 22 C -0.225 4.225 23 C -0.143 4.143 24 O -0.062 6.062 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.632 -10.381 -8.793 15.135 hybrid contribution 0.931 -0.224 -0.115 0.964 sum -5.701 -10.605 -8.908 14.977 Atomic orbital electron populations 1.21783 0.96116 1.01336 1.01833 1.21546 0.95668 0.97198 1.01890 1.21619 0.95461 0.96445 1.02307 1.21616 0.95348 0.96677 1.02097 1.21410 0.92871 0.96479 1.03754 1.21416 0.96840 0.92375 1.04990 1.23343 0.82117 0.91908 0.72530 1.90564 1.57154 1.47055 1.46184 1.86944 1.23860 1.34682 1.82162 1.19247 0.85646 0.78672 0.96712 0.89234 1.21104 1.24113 1.19504 0.92406 0.89227 1.25198 0.95717 0.96751 0.94469 1.69934 1.34380 1.40320 1.05637 0.86562 0.81196 0.82439 0.77847 1.20117 1.22744 1.14442 1.23110 0.91014 0.89928 0.97557 1.21226 0.97640 1.01285 1.04723 1.21629 0.97429 0.97696 1.05709 1.23793 0.94230 0.97920 0.98354 1.84492 1.23013 1.44125 1.54548 0.93013 0.92744 0.92817 0.92177 0.92094 0.91847 0.91971 0.91993 0.91836 0.90920 0.91255 0.88685 0.88390 0.91977 0.83944 0.84216 0.79502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.13 -1.05 5.93 -26.73 -0.16 -1.21 16 3 C -0.12 -1.16 5.21 -26.73 -0.14 -1.30 16 4 C -0.12 -1.25 5.21 -26.73 -0.14 -1.39 16 5 C -0.11 -1.44 4.50 -26.73 -0.12 -1.56 16 6 C -0.12 -1.81 5.81 -27.89 -0.16 -1.97 16 7 C 0.46 9.63 7.92 36.00 0.29 9.92 16 8 O -0.52 -12.12 15.20 -18.76 -0.29 -12.41 16 9 O -0.36 -8.47 6.69 -41.99 -0.28 -8.75 16 10 C 0.25 6.21 2.55 -29.03 -0.07 6.13 16 11 H 0.09 2.17 7.15 -51.93 -0.37 1.80 16 12 C -0.54 -15.38 9.51 -34.44 -0.33 -15.71 16 13 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 14 C 0.09 2.52 5.45 -17.82 -0.10 2.42 16 15 N -0.87 -26.31 13.96 55.43 0.77 -25.54 16 16 Si 0.89 22.44 22.92 -169.99 -3.90 18.54 16 17 H -0.27 -6.81 6.01 56.52 0.34 -6.47 16 18 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 19 H -0.22 -5.33 4.92 56.52 0.28 -5.05 16 20 C 0.03 0.80 5.34 -35.62 -0.19 0.61 16 21 C -0.23 -4.71 10.81 -39.70 -0.43 -5.14 16 22 C -0.21 -3.70 10.91 -39.70 -0.43 -4.13 16 23 C -0.08 -1.43 11.72 29.42 0.34 -1.08 16 24 O -0.16 -3.73 4.85 2.21 0.01 -3.72 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 35 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 36 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.14 2.62 8.06 -52.49 -0.42 2.20 16 40 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 41 H 0.19 2.66 8.06 -52.49 -0.42 2.24 16 LS Contribution 335.91 15.07 5.06 5.06 Total: -1.00 -32.62 335.91 -6.76 -39.38 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.88 Total: 2.64 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -1.27 Total: -15.21 kcal Atomic # 7 Polarization: -26.31 SS G_CDS: 0.77 Total: -25.54 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.56 Total: -24.88 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -3.90 Total: 18.54 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.62 -6.76 -39.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344936372.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.985 kcal (2) G-P(sol) polarization free energy of solvation -32.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds