Wall clock time and date at job start Tue Mar 31 2020 01:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47510 * 2 1 4 4 C 1.52996 * 109.47271 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46953 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.46952 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47298 * 180.02562 * 6 5 4 8 8 O 1.20833 * 119.99655 * 359.97438 * 7 6 5 9 9 O 1.34222 * 120.00432 * 180.27351 * 7 6 5 10 10 C 1.45201 * 117.00137 * 179.71953 * 9 7 6 11 11 H 1.08993 * 109.47491 * 330.00073 * 10 9 7 12 12 C 1.50706 * 109.46887 * 90.00045 * 10 9 7 13 13 H 1.08001 * 119.99914 * 239.99856 * 12 10 9 14 14 C 1.37878 * 119.99966 * 60.00384 * 12 10 9 15 15 N 1.31515 * 119.99763 * 179.97438 * 14 12 10 16 16 Si 1.86801 * 120.00110 * 359.97438 * 14 12 10 17 17 H 1.48500 * 109.47161 * 90.00506 * 16 14 12 18 18 H 1.48502 * 109.47174 * 210.00360 * 16 14 12 19 19 H 1.48499 * 109.47270 * 330.00657 * 16 14 12 20 20 C 1.50704 * 109.46907 * 209.99697 * 10 9 7 21 21 C 1.34516 * 125.78433 * 145.00355 * 20 10 9 22 22 C 1.41385 * 106.84086 * 179.97438 * 21 20 10 23 23 C 1.34521 * 106.83744 * 0.02562 * 22 21 20 24 24 O 1.34299 * 125.79250 * 324.69650 * 20 10 9 25 25 H 1.08996 * 109.47100 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46638 * 299.99899 * 1 2 3 27 27 H 1.08998 * 109.46846 * 59.99446 * 1 2 3 28 28 H 1.09000 * 109.47322 * 240.00043 * 2 1 3 29 29 H 1.08998 * 109.47285 * 120.00247 * 2 1 3 30 30 H 1.09008 * 109.46645 * 60.00002 * 3 2 1 31 31 H 1.08998 * 109.47049 * 300.00392 * 3 2 1 32 32 H 1.09000 * 109.47439 * 60.00118 * 4 3 2 33 33 H 1.08998 * 109.47408 * 300.00176 * 4 3 2 34 34 H 1.08994 * 109.47101 * 60.00033 * 5 4 3 35 35 H 1.09006 * 109.46726 * 299.99825 * 5 4 3 36 36 H 1.09000 * 109.47764 * 59.99520 * 6 5 4 37 37 H 1.09006 * 109.46938 * 299.99298 * 6 5 4 38 38 H 0.97002 * 119.99321 * 179.97438 * 15 14 12 39 39 H 1.07996 * 126.58313 * 0.03006 * 21 20 10 40 40 H 1.07992 * 126.58013 * 179.97438 * 22 21 20 41 41 H 1.07996 * 125.78786 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 6 5.6101 2.8849 0.0013 7 6 6.1125 4.3056 0.0026 8 8 5.3273 5.2241 0.0029 9 8 7.4321 4.5509 -0.0028 10 6 7.8438 5.9433 -0.0075 11 1 7.0916 6.5429 -0.5200 12 6 7.9914 6.4283 1.4117 13 1 7.3920 7.2542 1.7652 14 6 8.8917 5.8176 2.2589 15 7 9.0208 6.2412 3.4972 16 14 9.9281 4.3887 1.6476 17 1 11.1968 4.9066 1.0755 18 1 10.2314 3.4772 2.7800 19 1 9.1799 3.6465 0.6014 20 6 9.1637 6.0744 -0.7229 21 6 9.5427 7.1120 -1.4905 22 6 10.8445 6.8210 -1.9591 23 6 11.1829 5.6226 -1.4502 24 8 10.1633 5.1779 -0.6976 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6768 1.9563 -0.8899 32 1 3.9338 0.9285 -0.8891 33 1 3.9331 0.9287 0.8908 34 1 3.7165 3.3985 0.8912 35 1 3.7172 3.3990 -0.8888 36 1 5.9735 2.3714 -0.8888 37 1 5.9734 2.3707 0.8912 38 1 9.6539 5.8113 4.0932 39 1 8.9640 7.9979 -1.7067 40 1 11.4505 7.4413 -2.6027 41 1 12.1180 5.1080 -1.6146 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344936372.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:23 Heat of formation + Delta-G solvation = -110.222881 kcal Electronic energy + Delta-G solvation = -21881.060731 eV Core-core repulsion = 18533.632626 eV Total energy + Delta-G solvation = -3347.428105 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.54511 -41.21348 -37.91696 -37.06744 -35.08199 -34.31943 -33.95995 -32.36850 -30.27842 -28.66373 -26.23719 -24.72541 -23.00433 -22.44730 -21.83380 -21.50525 -21.22802 -19.47350 -18.76048 -18.18462 -17.59485 -17.21328 -16.80022 -16.57667 -16.10606 -15.24560 -15.20065 -14.98232 -14.70180 -14.04799 -14.00088 -13.75947 -13.66823 -13.47755 -13.37671 -13.22080 -13.02569 -12.68840 -12.32739 -12.31826 -12.13674 -11.78914 -11.69127 -11.61312 -11.49321 -11.31781 -11.22032 -11.08721 -10.89432 -10.54711 -9.31508 -8.54909 -6.74661 0.79965 1.23482 1.36358 1.48411 1.56185 1.76421 2.08204 2.32281 2.45892 2.90542 3.70110 3.80216 4.00143 4.10377 4.19642 4.22040 4.23687 4.31614 4.35577 4.46467 4.55966 4.62869 4.69602 4.85719 4.88754 4.92607 4.98717 5.05546 5.09990 5.10440 5.15021 5.23390 5.26336 5.29028 5.41728 5.50663 5.56353 5.68058 5.75646 5.99763 6.26866 6.35415 6.94994 7.07371 8.56667 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023203 B = 0.003906 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.464276 B = 7166.177812 C = 7558.318534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.112 4.112 5 C -0.103 4.103 6 C -0.110 4.110 7 C 0.445 3.555 8 O -0.551 6.551 9 O -0.364 6.364 10 C 0.260 3.740 11 H 0.081 0.919 12 C -0.553 4.553 13 H 0.043 0.957 14 C 0.040 3.960 15 N -0.917 5.917 16 Si 0.951 3.049 17 H -0.264 1.264 18 H -0.299 1.299 19 H -0.207 1.207 20 C -0.010 4.010 21 C -0.223 4.223 22 C -0.204 4.204 23 C -0.072 4.072 24 O -0.185 6.185 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.128 0.872 37 H 0.112 0.888 38 H 0.275 0.725 39 H 0.154 0.846 40 H 0.181 0.819 41 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.086 -12.748 -11.402 17.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.159 4.159 4 C -0.149 4.149 5 C -0.141 4.141 6 C -0.147 4.147 7 C 0.291 3.709 8 O -0.442 6.442 9 O -0.281 6.281 10 C 0.207 3.793 11 H 0.098 0.902 12 C -0.589 4.589 13 H 0.061 0.939 14 C -0.164 4.164 15 N -0.553 5.553 16 Si 0.780 3.220 17 H -0.192 1.192 18 H -0.228 1.228 19 H -0.132 1.132 20 C -0.060 4.060 21 C -0.242 4.242 22 C -0.223 4.223 23 C -0.137 4.137 24 O -0.084 6.084 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.146 0.854 37 H 0.130 0.870 38 H 0.084 0.916 39 H 0.172 0.828 40 H 0.199 0.801 41 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -5.236 -12.697 -11.085 17.649 hybrid contribution 0.430 0.607 0.486 0.888 sum -4.806 -12.090 -10.599 16.781 Atomic orbital electron populations 1.21793 0.95734 1.01929 1.01727 1.21526 0.96033 0.96136 1.02370 1.21615 0.94986 0.97420 1.01871 1.21567 0.95733 0.94335 1.03269 1.21395 0.91663 0.98539 1.02479 1.21608 0.97733 0.88249 1.07129 1.24625 0.81019 0.94163 0.71121 1.90549 1.57486 1.48707 1.47485 1.86889 1.25483 1.33167 1.82564 1.18807 0.86976 0.79083 0.94441 0.90162 1.21177 1.23819 1.18736 0.95154 0.93921 1.26010 0.96749 0.99296 0.94313 1.70041 1.35918 1.42346 1.07030 0.85598 0.79839 0.79210 0.77365 1.19179 1.22837 1.13166 1.22719 0.91031 0.91686 1.00553 1.21668 0.98942 1.00514 1.03097 1.22074 0.96345 0.98038 1.05826 1.24830 0.94286 0.98226 0.96359 1.84362 1.23689 1.44556 1.55793 0.92078 0.93085 0.92755 0.91401 0.91872 0.92749 0.92085 0.90256 0.91142 0.93060 0.91856 0.85381 0.86976 0.91624 0.82793 0.80121 0.74906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 71.98 0.71 -1.41 16 2 C -0.12 -1.81 5.93 30.60 0.18 -1.63 16 3 C -0.12 -2.15 5.21 30.59 0.16 -2.00 16 4 C -0.11 -2.08 5.21 30.59 0.16 -1.92 16 5 C -0.10 -2.67 4.50 30.59 0.14 -2.54 16 6 C -0.11 -3.17 5.81 29.85 0.17 -2.99 16 7 C 0.45 18.83 7.92 71.23 0.56 19.40 16 8 O -0.55 -26.60 15.20 21.94 0.33 -26.27 16 9 O -0.36 -17.14 6.69 -48.71 -0.33 -17.46 16 10 C 0.26 13.25 2.55 29.10 0.07 13.33 16 11 H 0.08 4.09 7.15 -2.39 -0.02 4.08 16 12 C -0.55 -33.31 9.51 25.60 0.24 -33.07 16 13 H 0.04 2.86 8.06 -2.91 -0.02 2.84 16 14 C 0.04 2.36 5.45 84.65 0.46 2.82 16 15 N -0.92 -57.69 13.96 21.45 0.30 -57.39 16 16 Si 0.95 46.61 22.92 68.60 1.57 48.18 16 17 H -0.26 -12.38 6.01 99.48 0.60 -11.78 16 18 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 19 H -0.21 -9.59 4.92 99.48 0.49 -9.10 16 20 C -0.01 -0.47 5.34 24.83 0.13 -0.34 16 21 C -0.22 -8.76 10.81 22.19 0.24 -8.52 16 22 C -0.20 -6.52 10.91 22.19 0.24 -6.27 16 23 C -0.07 -2.36 11.72 66.97 0.79 -1.57 16 24 O -0.19 -7.93 4.85 0.89 0.00 -7.93 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 35 H 0.06 1.71 8.10 -2.38 -0.02 1.69 16 36 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.11 2.98 8.14 -2.38 -0.02 2.97 16 38 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 39 H 0.15 5.50 8.06 -2.91 -0.02 5.48 16 40 H 0.18 4.18 8.06 -2.91 -0.02 4.16 16 41 H 0.23 5.22 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -74.51 335.91 6.81 -67.69 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.66 Total: 19.87 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 4.27 Total: -26.71 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.30 Total: -57.39 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: 0.01 Total: -51.65 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.57 Total: 48.18 kcal Total: -74.51 6.81 -67.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344936372.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.528 kcal (2) G-P(sol) polarization free energy of solvation -74.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds