Wall clock time and date at job start Tue Mar 31 2020 01:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00038 * 2 1 4 4 H 1.48509 * 109.47223 * 270.00381 * 3 2 1 5 5 H 1.48495 * 109.47265 * 30.00405 * 3 2 1 6 6 H 1.48493 * 109.47255 * 150.00565 * 3 2 1 7 7 C 1.37878 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00099 * 185.20772 * 7 2 1 9 9 C 1.50696 * 120.00046 * 5.19863 * 7 2 1 10 10 C 1.52999 * 112.99813 * 65.16139 * 9 7 2 11 11 O 1.45202 * 109.47352 * 62.81382 * 10 9 7 12 12 C 1.34221 * 117.00613 * 180.02562 * 11 10 9 13 13 O 1.20826 * 119.99733 * 359.97438 * 12 11 10 14 14 C 1.50705 * 120.00268 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47180 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.64321 * 55.41431 * 15 14 12 17 17 C 1.53028 * 109.63909 * 294.99623 * 15 14 12 18 18 C 1.50069 * 110.14596 * 190.88015 * 17 15 14 19 19 C 1.29437 * 124.07630 * 17.12863 * 18 17 15 20 20 C 1.50076 * 124.07667 * 359.55909 * 19 18 17 21 21 C 1.53015 * 110.15112 * 17.08863 * 20 19 18 22 22 C 1.54034 * 113.81992 * 196.98881 * 9 7 2 23 23 O 1.44447 * 85.42452 * 91.81051 * 22 9 7 24 24 C 1.44175 * 93.38132 * 24.09178 * 23 22 9 25 25 H 0.97001 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47265 * 182.81302 * 10 9 7 27 27 H 1.09002 * 109.47398 * 302.81252 * 10 9 7 28 28 H 1.08998 * 109.46557 * 299.99606 * 14 12 11 29 29 H 1.08993 * 109.46878 * 59.99680 * 14 12 11 30 30 H 1.08999 * 109.36200 * 311.08947 * 17 15 14 31 31 H 1.09004 * 109.35587 * 70.80963 * 17 15 14 32 32 H 1.07998 * 117.96019 * 197.15684 * 18 17 15 33 33 H 1.07999 * 117.96616 * 179.52767 * 19 18 17 34 34 H 1.09000 * 109.35981 * 137.30927 * 20 19 18 35 35 H 1.08996 * 109.35486 * 257.03442 * 20 19 18 36 36 H 1.08997 * 109.64209 * 190.90239 * 21 20 19 37 37 H 1.08993 * 109.62256 * 70.27618 * 21 20 19 38 38 H 1.09001 * 113.87039 * 205.91670 * 22 9 7 39 39 H 1.09001 * 113.86106 * 337.62520 * 22 9 7 40 40 H 1.08994 * 113.86385 * 221.76747 * 24 23 22 41 41 H 1.08998 * 113.86631 * 90.05769 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0812 -1.1961 0.0844 9 6 1.2557 -2.4964 -0.1194 10 6 0.5477 -2.6581 -1.4660 11 8 1.5337 -2.6804 -2.5317 12 6 1.0734 -2.8168 -3.7851 13 8 -0.1142 -2.9148 -3.9852 14 6 2.0377 -2.8489 -4.9428 15 6 1.2598 -3.0106 -6.2503 16 1 0.5168 -2.2177 -6.3351 17 6 0.5628 -4.3728 -6.2689 18 6 0.0198 -4.6569 -7.6388 19 6 0.3910 -4.0322 -8.7099 20 6 1.4094 -2.9300 -8.7304 21 6 2.2283 -2.9450 -7.4379 22 6 2.0790 -3.7281 0.3024 23 8 1.5106 -3.5151 1.6131 24 6 0.3626 -2.8135 1.0950 25 1 -0.4850 0.8401 0.0004 26 1 -0.0141 -3.5921 -1.4713 27 1 -0.1351 -1.8225 -1.6202 28 1 2.6037 -1.9177 -4.9700 29 1 2.7233 -3.6874 -4.8213 30 1 1.2781 -5.1486 -5.9958 31 1 -0.2574 -4.3688 -5.5509 32 1 -0.7275 -5.4303 -7.7369 33 1 -0.0598 -4.3225 -9.6474 34 1 2.0754 -3.0692 -9.5819 35 1 0.9011 -1.9702 -8.8223 36 1 2.8268 -2.0364 -7.3728 37 1 2.8803 -3.8184 -7.4278 38 1 1.7589 -4.6560 -0.1717 39 1 3.1572 -3.5742 0.2575 40 1 0.0823 -1.9358 1.6774 41 1 -0.4828 -3.4614 0.8634 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345268814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:53 Heat of formation + Delta-G solvation = -102.282105 kcal Electronic energy + Delta-G solvation = -22330.027950 eV Core-core repulsion = 18982.944183 eV Total energy + Delta-G solvation = -3347.083767 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.07313 -39.18638 -38.29253 -35.65760 -32.96790 -32.79663 -30.80081 -29.98471 -27.66276 -25.41722 -25.18372 -24.14326 -23.23413 -21.61523 -19.86464 -18.99403 -18.02621 -16.92458 -16.46741 -16.00867 -15.77438 -15.59386 -14.94563 -14.47809 -14.40283 -14.29673 -14.07672 -13.64419 -13.23260 -12.98321 -12.49046 -12.45963 -12.12878 -12.05520 -11.92219 -11.59612 -11.49976 -11.01539 -10.77820 -10.74863 -10.62470 -10.46450 -10.21108 -9.98652 -9.93510 -9.49401 -9.35833 -9.07428 -8.98484 -8.75007 -8.32237 -6.19037 -4.22499 2.26328 2.83558 3.24685 3.31837 3.35068 3.42302 4.32205 4.58813 4.66003 4.82733 4.88444 5.12336 5.14524 5.16686 5.29807 5.36921 5.46872 5.57652 5.65350 5.74056 5.77141 5.80891 5.90531 6.02326 6.07089 6.11151 6.17612 6.24869 6.31361 6.39220 6.39679 6.58672 6.62199 6.92599 6.98872 7.15662 7.27421 7.37215 7.41200 7.77214 8.17753 8.50225 8.75167 9.41486 10.89101 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020600 B = 0.004414 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.914676 B = 6341.752911 C = 7119.839469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.487 4.487 8 H 0.066 0.934 9 C 0.033 3.967 10 C 0.082 3.918 11 O -0.337 6.337 12 C 0.451 3.549 13 O -0.521 6.521 14 C -0.111 4.111 15 C -0.075 4.075 16 H 0.082 0.918 17 C -0.096 4.096 18 C -0.143 4.143 19 C -0.169 4.169 20 C -0.088 4.088 21 C -0.115 4.115 22 C 0.030 3.970 23 O -0.390 6.390 24 C 0.051 3.949 25 H 0.265 0.735 26 H 0.035 0.965 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 -6.352 -14.085 15.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.525 4.525 8 H 0.084 0.916 9 C 0.032 3.968 10 C 0.008 3.992 11 O -0.252 6.252 12 C 0.295 3.705 13 O -0.412 6.412 14 C -0.149 4.149 15 C -0.094 4.094 16 H 0.100 0.900 17 C -0.133 4.133 18 C -0.161 4.161 19 C -0.187 4.187 20 C -0.125 4.125 21 C -0.153 4.153 22 C -0.047 4.047 23 O -0.309 6.309 24 C -0.027 4.027 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.106 0.894 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.395 -6.315 -13.813 15.376 hybrid contribution 0.002 0.891 -0.237 0.922 sum 2.398 -5.424 -14.050 15.250 Atomic orbital electron populations 1.69885 1.05925 1.27252 1.49589 1.24976 0.94961 0.99375 0.94424 0.86464 0.79915 0.82762 0.78183 1.20557 1.21159 1.19656 1.20601 0.93264 0.88338 1.50273 0.91575 1.21089 0.92544 0.94567 0.88552 1.23468 0.90198 1.00112 0.85427 1.86496 1.42225 1.81395 1.15120 1.23571 0.88900 0.72837 0.85209 1.90574 1.18293 1.46374 1.85948 1.21441 0.97598 1.05463 0.90405 1.21032 0.97246 0.98918 0.92168 0.89966 1.20692 1.01037 0.96137 0.95432 1.22105 0.99583 0.99714 0.94702 1.21994 0.99899 0.98822 0.97976 1.20413 0.96578 0.97727 0.97816 1.21660 0.97501 1.02256 0.93851 1.24075 0.99447 0.97400 0.83756 1.89527 1.37447 1.77822 1.26086 1.23901 0.88180 0.94417 0.96157 0.92527 0.94625 0.89396 0.87846 0.88167 0.91227 0.88987 0.88245 0.88378 0.91253 0.91002 0.91341 0.91553 0.92864 0.90364 0.88346 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.06 11.22 55.43 0.62 -23.44 16 2 C 0.07 1.72 5.24 -17.82 -0.09 1.63 16 3 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.49 -12.85 8.13 -34.44 -0.28 -13.13 16 8 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.03 0.80 0.56 -154.58 -0.09 0.71 16 10 C 0.08 1.89 4.63 37.16 0.17 2.06 16 11 O -0.34 -7.21 10.01 -39.23 -0.39 -7.60 16 12 C 0.45 8.38 7.71 36.01 0.28 8.66 16 13 O -0.52 -10.80 13.78 -18.75 -0.26 -11.06 16 14 C -0.11 -1.48 5.29 -27.88 -0.15 -1.63 16 15 C -0.08 -0.93 1.88 -90.40 -0.17 -1.10 16 16 H 0.08 1.16 7.96 -51.93 -0.41 0.75 16 17 C -0.10 -1.21 5.03 -28.17 -0.14 -1.35 16 18 C -0.14 -1.61 9.80 -35.90 -0.35 -1.96 16 19 C -0.17 -1.72 9.80 -35.89 -0.35 -2.08 16 20 C -0.09 -0.82 6.12 -28.18 -0.17 -0.99 16 21 C -0.12 -1.12 5.31 -26.52 -0.14 -1.26 16 22 C 0.03 0.65 8.34 37.64 0.31 0.97 16 23 O -0.39 -9.30 12.41 -35.23 -0.44 -9.74 16 24 C 0.05 1.19 7.92 37.64 0.30 1.49 16 25 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 27 H 0.09 2.29 6.96 -51.93 -0.36 1.93 16 28 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.10 1.12 8.11 -51.93 -0.42 0.70 16 30 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.09 1.38 6.23 -51.93 -0.32 1.06 16 32 H 0.10 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.10 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 38 H 0.05 1.03 8.10 -51.93 -0.42 0.61 16 39 H 0.08 1.63 8.08 -51.93 -0.42 1.21 16 40 H 0.10 2.50 7.43 -51.93 -0.39 2.11 16 41 H 0.05 1.01 8.09 -51.93 -0.42 0.59 16 LS Contribution 334.14 15.07 5.04 5.04 Total: -1.00 -29.01 334.14 -7.84 -36.84 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.51 Total: 2.22 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -0.87 Total: -7.97 kcal Atomic # 7 Polarization: -24.06 SS G_CDS: 0.62 Total: -23.44 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -1.09 Total: -28.40 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.01 -7.84 -36.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345268814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.439 kcal (2) G-P(sol) polarization free energy of solvation -29.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds