Wall clock time and date at job start Tue Mar 31 2020 01:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00038 * 2 1 4 4 H 1.48509 * 109.47223 * 270.00381 * 3 2 1 5 5 H 1.48495 * 109.47265 * 30.00405 * 3 2 1 6 6 H 1.48493 * 109.47255 * 150.00565 * 3 2 1 7 7 C 1.37878 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00099 * 185.20772 * 7 2 1 9 9 C 1.50696 * 120.00046 * 5.19863 * 7 2 1 10 10 C 1.52999 * 112.99813 * 65.16139 * 9 7 2 11 11 O 1.45202 * 109.47352 * 62.81382 * 10 9 7 12 12 C 1.34221 * 117.00613 * 180.02562 * 11 10 9 13 13 O 1.20826 * 119.99733 * 359.97438 * 12 11 10 14 14 C 1.50705 * 120.00268 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47180 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.64321 * 55.41431 * 15 14 12 17 17 C 1.53028 * 109.63909 * 294.99623 * 15 14 12 18 18 C 1.50069 * 110.14596 * 190.88015 * 17 15 14 19 19 C 1.29437 * 124.07630 * 17.12863 * 18 17 15 20 20 C 1.50076 * 124.07667 * 359.55909 * 19 18 17 21 21 C 1.53015 * 110.15112 * 17.08863 * 20 19 18 22 22 C 1.54034 * 113.81992 * 196.98881 * 9 7 2 23 23 O 1.44447 * 85.42452 * 91.81051 * 22 9 7 24 24 C 1.44175 * 93.38132 * 24.09178 * 23 22 9 25 25 H 0.97001 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47265 * 182.81302 * 10 9 7 27 27 H 1.09002 * 109.47398 * 302.81252 * 10 9 7 28 28 H 1.08998 * 109.46557 * 299.99606 * 14 12 11 29 29 H 1.08993 * 109.46878 * 59.99680 * 14 12 11 30 30 H 1.08999 * 109.36200 * 311.08947 * 17 15 14 31 31 H 1.09004 * 109.35587 * 70.80963 * 17 15 14 32 32 H 1.07998 * 117.96019 * 197.15684 * 18 17 15 33 33 H 1.07999 * 117.96616 * 179.52767 * 19 18 17 34 34 H 1.09000 * 109.35981 * 137.30927 * 20 19 18 35 35 H 1.08996 * 109.35486 * 257.03442 * 20 19 18 36 36 H 1.08997 * 109.64209 * 190.90239 * 21 20 19 37 37 H 1.08993 * 109.62256 * 70.27618 * 21 20 19 38 38 H 1.09001 * 113.87039 * 205.91670 * 22 9 7 39 39 H 1.09001 * 113.86106 * 337.62520 * 22 9 7 40 40 H 1.08994 * 113.86385 * 221.76747 * 24 23 22 41 41 H 1.08998 * 113.86631 * 90.05769 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0812 -1.1961 0.0844 9 6 1.2557 -2.4964 -0.1194 10 6 0.5477 -2.6581 -1.4660 11 8 1.5337 -2.6804 -2.5317 12 6 1.0734 -2.8168 -3.7851 13 8 -0.1142 -2.9148 -3.9852 14 6 2.0377 -2.8489 -4.9428 15 6 1.2598 -3.0106 -6.2503 16 1 0.5168 -2.2177 -6.3351 17 6 0.5628 -4.3728 -6.2689 18 6 0.0198 -4.6569 -7.6388 19 6 0.3910 -4.0322 -8.7099 20 6 1.4094 -2.9300 -8.7304 21 6 2.2283 -2.9450 -7.4379 22 6 2.0790 -3.7281 0.3024 23 8 1.5106 -3.5151 1.6131 24 6 0.3626 -2.8135 1.0950 25 1 -0.4850 0.8401 0.0004 26 1 -0.0141 -3.5921 -1.4713 27 1 -0.1351 -1.8225 -1.6202 28 1 2.6037 -1.9177 -4.9700 29 1 2.7233 -3.6874 -4.8213 30 1 1.2781 -5.1486 -5.9958 31 1 -0.2574 -4.3688 -5.5509 32 1 -0.7275 -5.4303 -7.7369 33 1 -0.0598 -4.3225 -9.6474 34 1 2.0754 -3.0692 -9.5819 35 1 0.9011 -1.9702 -8.8223 36 1 2.8268 -2.0364 -7.3728 37 1 2.8803 -3.8184 -7.4278 38 1 1.7589 -4.6560 -0.1717 39 1 3.1572 -3.5742 0.2575 40 1 0.0823 -1.9358 1.6774 41 1 -0.4828 -3.4614 0.8634 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345268814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:53 Heat of formation + Delta-G solvation = -117.593712 kcal Electronic energy + Delta-G solvation = -22330.691911 eV Core-core repulsion = 18982.944183 eV Total energy + Delta-G solvation = -3347.747728 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.60239 -40.88119 -39.36658 -37.25505 -34.90821 -33.84531 -31.84369 -31.60087 -28.82846 -27.26319 -27.05099 -25.88011 -24.12197 -22.72678 -21.20040 -20.85839 -18.93875 -18.47932 -18.22275 -17.39081 -17.27408 -16.85411 -16.75055 -16.18941 -16.16293 -15.82445 -15.23923 -14.78528 -14.48905 -14.08669 -13.94259 -13.77523 -13.54684 -13.39787 -13.12544 -12.99006 -12.86085 -12.61471 -12.50902 -12.34935 -11.86947 -11.74890 -11.60883 -11.55790 -11.25412 -11.04865 -10.99649 -10.88223 -10.68860 -10.21854 -9.82418 -8.19299 -6.28446 1.35754 1.41535 1.43455 1.44709 1.52878 1.95975 2.40561 2.99534 3.21904 3.63368 3.73390 3.82573 4.03951 4.17801 4.26491 4.28725 4.41668 4.45755 4.47823 4.48955 4.54703 4.60085 4.70521 4.73376 4.78010 4.81526 4.94277 5.04345 5.09744 5.17531 5.21939 5.23431 5.37405 5.46358 5.48803 5.52184 5.72315 5.80584 5.81440 6.10800 6.22876 6.71338 6.95134 7.37909 8.87506 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020600 B = 0.004414 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.914676 B = 6341.752911 C = 7119.839469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.018 3.982 10 C 0.095 3.905 11 O -0.347 6.347 12 C 0.444 3.556 13 O -0.548 6.548 14 C -0.103 4.103 15 C -0.073 4.073 16 H 0.057 0.943 17 C -0.094 4.094 18 C -0.166 4.166 19 C -0.161 4.161 20 C -0.092 4.092 21 C -0.109 4.109 22 C 0.040 3.960 23 O -0.404 6.404 24 C 0.053 3.947 25 H 0.264 0.736 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.120 0.880 29 H 0.129 0.871 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.585 -6.722 -15.841 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.780 3.220 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.017 3.983 10 C 0.020 3.980 11 O -0.263 6.263 12 C 0.289 3.711 13 O -0.439 6.439 14 C -0.140 4.140 15 C -0.092 4.092 16 H 0.076 0.924 17 C -0.131 4.131 18 C -0.184 4.184 19 C -0.179 4.179 20 C -0.129 4.129 21 C -0.147 4.147 22 C -0.036 4.036 23 O -0.324 6.324 24 C -0.024 4.024 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.138 0.862 29 H 0.147 0.853 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.164 -6.694 -15.579 17.460 hybrid contribution -0.576 0.976 0.260 1.163 sum 3.589 -5.717 -15.320 16.741 Atomic orbital electron populations 1.69993 1.06996 1.27679 1.50282 1.25646 0.95661 1.02197 0.94263 0.85600 0.78889 0.79290 0.78217 1.20129 1.21088 1.19127 1.20839 0.93177 0.89704 1.50272 0.92181 1.21152 0.93224 0.94960 0.88971 1.23073 0.89941 0.98974 0.85985 1.86501 1.41819 1.81969 1.15996 1.24698 0.89646 0.71502 0.85216 1.90571 1.19892 1.47426 1.86044 1.21630 0.96798 1.07431 0.88112 1.21018 0.97359 0.97868 0.92917 0.92403 1.20607 1.00247 0.96720 0.95551 1.22122 1.00775 1.01061 0.94429 1.22267 0.99348 0.98100 0.98170 1.20508 0.96707 0.97272 0.98425 1.21653 0.97012 1.03571 0.92440 1.24172 0.99659 0.97399 0.82366 1.89498 1.37640 1.77842 1.27374 1.23817 0.88855 0.94086 0.95617 0.92732 0.93728 0.92954 0.86200 0.85317 0.90261 0.92299 0.87884 0.86841 0.88992 0.91002 0.89927 0.90290 0.90112 0.89530 0.90781 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.28 11.22 21.45 0.24 -50.04 16 2 C 0.02 1.19 5.24 84.65 0.44 1.63 16 3 Si 0.95 42.51 29.54 68.60 2.03 44.54 16 4 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.50 -26.56 8.13 25.60 0.21 -26.36 16 8 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 9 C 0.02 0.84 0.56 -52.23 -0.03 0.81 16 10 C 0.09 4.42 4.63 71.98 0.33 4.76 16 11 O -0.35 -14.72 10.01 -51.33 -0.51 -15.24 16 12 C 0.44 16.37 7.71 71.24 0.55 16.92 16 13 O -0.55 -23.21 13.78 21.96 0.30 -22.90 16 14 C -0.10 -2.53 5.29 29.85 0.16 -2.37 16 15 C -0.07 -1.70 1.88 -10.65 -0.02 -1.72 16 16 H 0.06 1.62 7.96 -2.39 -0.02 1.60 16 17 C -0.09 -2.31 5.03 29.66 0.15 -2.16 16 18 C -0.17 -3.56 9.80 27.04 0.27 -3.30 16 19 C -0.16 -2.93 9.80 27.05 0.27 -2.67 16 20 C -0.09 -1.44 6.12 29.66 0.18 -1.26 16 21 C -0.11 -1.79 5.31 30.73 0.16 -1.63 16 22 C 0.04 1.69 8.34 72.30 0.60 2.29 16 23 O -0.40 -18.98 12.41 -148.98 -1.85 -20.83 16 24 C 0.05 2.53 7.92 72.30 0.57 3.11 16 25 H 0.26 14.02 8.31 -92.71 -0.77 13.24 16 26 H 0.04 1.96 8.12 -2.39 -0.02 1.94 16 27 H 0.05 2.81 6.96 -2.39 -0.02 2.79 16 28 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.13 2.48 8.11 -2.39 -0.02 2.46 16 30 H 0.08 1.72 8.08 -2.39 -0.02 1.70 16 31 H 0.06 1.82 6.23 -2.38 -0.01 1.81 16 32 H 0.10 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.11 1.71 8.06 -2.91 -0.02 1.68 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.13 8.12 -2.39 -0.02 1.11 16 38 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 39 H 0.09 3.45 8.08 -2.39 -0.02 3.43 16 40 H 0.07 3.85 7.43 -2.39 -0.02 3.84 16 41 H 0.07 2.86 8.09 -2.39 -0.02 2.84 16 Total: -1.00 -63.06 334.14 5.05 -58.01 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 1.00 Total: 18.41 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: 3.84 Total: -11.94 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.24 Total: -50.04 kcal Atomic # 8 Polarization: -56.91 SS G_CDS: -2.06 Total: -58.97 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -63.06 5.05 -58.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345268814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.587 kcal (2) G-P(sol) polarization free energy of solvation -63.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds