Wall clock time and date at job start Tue Mar 31 2020 01:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99971 * 2 1 4 4 H 1.48494 * 109.46958 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46904 * 299.99920 * 3 2 1 6 6 H 1.48501 * 109.46933 * 60.00032 * 3 2 1 7 7 C 1.37878 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99823 * 186.45780 * 7 2 1 9 9 C 1.50699 * 120.00090 * 6.17845 * 7 2 1 10 10 C 1.53001 * 113.00285 * 285.76236 * 9 7 2 11 11 O 1.45206 * 109.46803 * 296.98229 * 10 9 7 12 12 C 1.34229 * 116.99849 * 180.02562 * 11 10 9 13 13 O 1.20825 * 119.99768 * 359.97438 * 12 11 10 14 14 C 1.50695 * 119.99692 * 180.02562 * 12 11 10 15 15 C 1.53003 * 109.47300 * 179.97438 * 14 12 11 16 16 H 1.08999 * 109.63767 * 304.58193 * 15 14 12 17 17 C 1.53022 * 109.63978 * 64.99510 * 15 14 12 18 18 C 1.50072 * 110.14703 * 169.12368 * 17 15 14 19 19 C 1.29444 * 124.07345 * 342.87102 * 18 17 15 20 20 C 1.50069 * 124.07648 * 0.49433 * 19 18 17 21 21 C 1.53038 * 110.13856 * 342.82596 * 20 19 18 22 22 C 1.54029 * 113.81594 * 153.76872 * 9 7 2 23 23 O 1.44178 * 85.51872 * 223.19861 * 22 9 7 24 24 C 1.44168 * 93.34101 * 24.19581 * 23 22 9 25 25 H 0.97001 * 119.99860 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47337 * 56.97842 * 10 9 7 27 27 H 1.08998 * 109.47130 * 176.98094 * 10 9 7 28 28 H 1.09005 * 109.46971 * 299.99849 * 14 12 11 29 29 H 1.09000 * 109.47771 * 59.99458 * 14 12 11 30 30 H 1.09005 * 109.36087 * 289.33277 * 17 15 14 31 31 H 1.08995 * 109.35889 * 48.92031 * 17 15 14 32 32 H 1.07999 * 117.96389 * 162.88716 * 18 17 15 33 33 H 1.08000 * 117.96453 * 180.46245 * 19 18 17 34 34 H 1.09002 * 109.36067 * 103.04915 * 20 19 18 35 35 H 1.09001 * 109.35701 * 222.63966 * 20 19 18 36 36 H 1.08998 * 109.65863 * 289.78561 * 21 20 19 37 37 H 1.08996 * 109.63704 * 169.14274 * 21 20 19 38 38 H 1.09002 * 113.86778 * 337.34760 * 22 9 7 39 39 H 1.09000 * 113.86246 * 109.05392 * 22 9 7 40 40 H 1.08998 * 113.86769 * 221.66074 * 24 23 22 41 41 H 1.09001 * 113.98630 * 89.96744 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0793 -1.1971 0.1047 9 6 1.2576 -2.4953 -0.1416 10 6 0.5045 -2.8932 1.1295 11 8 1.4540 -3.1118 2.2061 12 6 0.9517 -3.4704 3.3981 13 8 -0.2418 -3.5969 3.5374 14 6 1.8763 -3.7139 4.5629 15 6 1.0550 -4.1060 5.7928 16 1 0.3074 -3.3387 5.9939 17 6 0.3613 -5.4467 5.5419 18 6 -0.2272 -5.9712 6.8189 19 6 0.1059 -5.5511 7.9972 20 6 1.1193 -4.4736 8.2503 21 6 1.9824 -4.2589 7.0049 22 6 2.0988 -3.6324 -0.7512 23 8 0.9237 -3.9308 -1.5315 24 6 0.4078 -2.5890 -1.4230 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1840 -2.0957 1.4086 27 1 -0.0561 -3.8102 0.9476 28 1 2.5679 -4.5193 4.3155 29 1 2.4387 -2.8050 4.7767 30 1 -0.4325 -5.3109 4.8073 31 1 1.0875 -6.1630 5.1578 32 1 -0.9748 -6.7475 6.7507 33 1 -0.3758 -6.0040 8.8512 34 1 0.6052 -3.5451 8.4984 35 1 1.7564 -4.7657 9.0852 36 1 2.6366 -5.1186 6.8595 37 1 2.5804 -3.3556 7.1250 38 1 2.9454 -3.2858 -1.3439 39 1 2.3657 -4.4138 -0.0397 40 1 -0.6664 -2.5426 -1.2442 41 1 0.7367 -1.9220 -2.2200 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345268815.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:55 Heat of formation + Delta-G solvation = -118.724980 kcal Electronic energy + Delta-G solvation = -22312.732524 eV Core-core repulsion = 18964.935740 eV Total energy + Delta-G solvation = -3347.796784 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67113 -40.92915 -39.36857 -37.26911 -34.94781 -33.85453 -31.72648 -31.59588 -28.90719 -27.26670 -27.03855 -26.00315 -24.14534 -22.77412 -21.20383 -20.52390 -18.96847 -18.75525 -18.32983 -17.40328 -17.26334 -16.87097 -16.76514 -16.38804 -16.02817 -15.72034 -15.27249 -14.66466 -14.51481 -14.07182 -13.84632 -13.77551 -13.44054 -13.23906 -13.18308 -12.98573 -12.95436 -12.83723 -12.51564 -12.48499 -12.24135 -11.77565 -11.61906 -11.54952 -11.10870 -11.02873 -10.98732 -10.71703 -10.61602 -10.36417 -9.82746 -8.16627 -6.27733 1.33203 1.42094 1.44263 1.46081 1.56285 1.90159 2.42457 3.06496 3.14982 3.61996 3.72380 3.81882 4.03188 4.14128 4.23421 4.26103 4.38830 4.44665 4.48404 4.54355 4.61029 4.67365 4.70820 4.73696 4.78523 4.83563 4.89614 4.97776 5.04697 5.09962 5.21891 5.27400 5.36990 5.46505 5.48752 5.51531 5.75036 5.78522 5.80638 6.10434 6.18572 6.73783 6.91518 7.40651 8.90421 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020746 B = 0.004341 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.363674 B = 6448.640608 C = 7239.038421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.023 3.977 3 Si 0.954 3.046 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.287 1.287 7 C -0.519 4.519 8 H 0.065 0.935 9 C 0.005 3.995 10 C 0.116 3.884 11 O -0.348 6.348 12 C 0.445 3.555 13 O -0.548 6.548 14 C -0.101 4.101 15 C -0.073 4.073 16 H 0.058 0.942 17 C -0.095 4.095 18 C -0.166 4.166 19 C -0.160 4.160 20 C -0.092 4.092 21 C -0.109 4.109 22 C 0.046 3.954 23 O -0.417 6.417 24 C 0.073 3.927 25 H 0.263 0.737 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.129 0.871 29 H 0.123 0.877 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.502 -8.084 13.640 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.177 4.177 3 Si 0.780 3.220 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.213 1.213 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.005 3.995 10 C 0.042 3.958 11 O -0.264 6.264 12 C 0.290 3.710 13 O -0.439 6.439 14 C -0.138 4.138 15 C -0.091 4.091 16 H 0.077 0.923 17 C -0.132 4.132 18 C -0.184 4.184 19 C -0.178 4.178 20 C -0.129 4.129 21 C -0.146 4.146 22 C -0.031 4.031 23 O -0.337 6.337 24 C -0.003 4.003 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.147 0.853 29 H 0.141 0.859 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.901 -8.228 13.505 16.556 hybrid contribution -0.545 1.159 -0.307 1.317 sum 4.357 -7.069 13.198 15.593 Atomic orbital electron populations 1.70029 1.07185 1.27627 1.50487 1.25669 0.95533 1.02232 0.94231 0.85555 0.79456 0.79642 0.77337 1.18633 1.20632 1.21323 1.21187 0.93724 0.90159 1.50646 0.91641 1.21051 0.93313 0.94942 0.90212 1.22598 0.90110 0.97623 0.85465 1.86463 1.42012 1.77954 1.19954 1.24744 0.89245 0.72116 0.84894 1.90577 1.19190 1.49496 1.84659 1.21640 0.97203 1.06456 0.88540 1.21021 0.97240 0.97284 0.93605 0.92332 1.20607 1.00076 0.96184 0.96343 1.22111 1.00793 1.01108 0.94435 1.22272 0.99441 0.98913 0.97156 1.20513 0.96518 0.97450 0.98433 1.21655 0.97118 1.03377 0.92468 1.24097 0.89390 0.96801 0.92781 1.89429 1.37311 1.30022 1.76967 1.23641 0.98301 0.81217 0.97176 0.92775 0.93062 0.94524 0.85333 0.85902 0.92470 0.90345 0.87956 0.86814 0.90926 0.88955 0.90296 0.89781 0.89676 0.89566 0.91657 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.13 11.76 21.45 0.25 -49.88 16 2 C 0.02 1.22 5.30 84.66 0.45 1.66 16 3 Si 0.95 41.46 29.54 68.60 2.03 43.49 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.52 -26.66 8.19 25.60 0.21 -26.45 16 8 H 0.07 3.30 7.82 -2.91 -0.02 3.27 16 9 C 0.01 0.26 0.57 -52.23 -0.03 0.23 16 10 C 0.12 5.64 4.67 71.98 0.34 5.98 16 11 O -0.35 -15.06 10.02 -51.41 -0.51 -15.57 16 12 C 0.44 16.75 7.71 71.23 0.55 17.30 16 13 O -0.55 -23.84 13.78 21.97 0.30 -23.54 16 14 C -0.10 -2.52 5.29 29.85 0.16 -2.36 16 15 C -0.07 -1.72 1.88 -10.65 -0.02 -1.74 16 16 H 0.06 1.65 7.96 -2.39 -0.02 1.64 16 17 C -0.10 -2.40 5.03 29.66 0.15 -2.25 16 18 C -0.17 -3.67 9.80 27.04 0.27 -3.40 16 19 C -0.16 -2.96 9.80 27.04 0.27 -2.69 16 20 C -0.09 -1.45 6.12 29.66 0.18 -1.27 16 21 C -0.11 -1.78 5.31 30.74 0.16 -1.62 16 22 C 0.05 1.91 8.32 72.27 0.60 2.51 16 23 O -0.42 -18.99 12.37 -148.98 -1.84 -20.83 16 24 C 0.07 3.50 7.44 72.28 0.54 4.04 16 25 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 26 H 0.05 2.82 7.28 -2.39 -0.02 2.81 16 27 H 0.04 1.76 8.08 -2.39 -0.02 1.74 16 28 H 0.13 2.52 8.11 -2.38 -0.02 2.50 16 29 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.06 1.83 6.23 -2.38 -0.01 1.81 16 31 H 0.08 1.76 8.08 -2.39 -0.02 1.74 16 32 H 0.10 2.12 8.06 -2.91 -0.02 2.09 16 33 H 0.11 1.74 8.06 -2.91 -0.02 1.71 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.13 8.12 -2.39 -0.02 1.12 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 3.33 8.09 -2.39 -0.02 3.31 16 39 H 0.09 3.28 8.10 -2.39 -0.02 3.26 16 40 H 0.07 3.18 8.10 -2.39 -0.02 3.16 16 41 H 0.07 3.44 8.09 -2.39 -0.02 3.42 16 Total: -1.00 -62.16 335.30 5.04 -57.13 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 1.00 Total: 19.28 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: 3.82 Total: -10.06 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.25 Total: -49.88 kcal Atomic # 8 Polarization: -57.89 SS G_CDS: -2.06 Total: -59.95 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -62.16 5.04 -57.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345268815.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.598 kcal (2) G-P(sol) polarization free energy of solvation -62.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds