Wall clock time and date at job start Tue Mar 31 2020 01:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47237 * 275.40933 * 3 2 1 5 5 H 1.48499 * 109.47280 * 35.40952 * 3 2 1 6 6 H 1.48503 * 109.47461 * 155.40890 * 3 2 1 7 7 C 1.37873 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00248 * 353.72344 * 7 2 1 9 9 C 1.50706 * 119.99907 * 173.72929 * 7 2 1 10 10 C 1.52995 * 113.00255 * 85.90332 * 9 7 2 11 11 O 1.45199 * 109.47118 * 46.04566 * 10 9 7 12 12 C 1.34226 * 117.00388 * 184.58038 * 11 10 9 13 13 O 1.20827 * 119.99915 * 5.25655 * 12 11 10 14 14 C 1.50700 * 120.00381 * 185.25950 * 12 11 10 15 15 C 1.53002 * 109.47431 * 174.82153 * 14 12 11 16 16 H 1.08997 * 115.54766 * 29.33164 * 15 14 12 17 17 C 1.53070 * 117.49298 * 243.60237 * 15 14 12 18 18 C 1.52998 * 117.50079 * 174.99773 * 15 14 12 19 19 H 1.09007 * 117.49490 * 359.97438 * 18 15 14 20 20 C 1.53000 * 117.50065 * 214.98126 * 18 15 14 21 21 C 1.53000 * 117.52035 * 111.37134 * 20 18 15 22 22 C 1.52997 * 117.49847 * 180.02562 * 20 18 15 23 23 C 1.54030 * 113.92526 * 217.83905 * 9 7 2 24 24 O 1.44179 * 85.52154 * 91.65910 * 23 9 7 25 25 C 1.44183 * 93.33794 * 24.19079 * 24 23 9 26 26 H 0.96999 * 120.00275 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47483 * 286.04923 * 10 9 7 28 28 H 1.08995 * 109.47302 * 166.04577 * 10 9 7 29 29 H 1.09003 * 109.46971 * 54.82114 * 14 12 11 30 30 H 1.08998 * 109.47280 * 294.82199 * 14 12 11 31 31 H 1.09001 * 117.51151 * 145.03794 * 17 15 14 32 32 H 1.08998 * 117.49988 * 359.97438 * 17 15 14 33 33 H 1.08998 * 115.54878 * 325.66704 * 20 18 15 34 34 H 1.08998 * 117.49849 * 214.97309 * 21 20 18 35 35 H 1.09002 * 117.49424 * 359.97438 * 21 20 18 36 36 H 1.09000 * 117.50176 * 359.97125 * 22 20 18 37 37 H 1.08995 * 117.50167 * 145.00167 * 22 20 18 38 38 H 1.09001 * 113.86422 * 205.80627 * 23 9 7 39 39 H 1.08999 * 113.86753 * 337.50914 * 23 9 7 40 40 H 1.08998 * 113.86296 * 221.66547 * 25 24 23 41 41 H 1.08993 * 113.86351 * 89.95952 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3823 2.1124 -1.3938 5 1 1.5084 2.6169 0.8112 6 1 3.5992 1.4099 0.5826 7 6 2.0045 -1.1940 -0.0005 8 1 1.4693 -2.1266 0.1013 9 6 3.5048 -1.1979 -0.1431 10 6 4.2326 -1.0229 1.1912 11 8 3.6363 -1.8964 2.1860 12 6 4.0994 -1.7956 3.4418 13 8 4.9054 -0.9399 3.7215 14 6 3.6144 -2.7496 4.5028 15 6 4.3867 -2.5045 5.8007 16 1 4.7376 -1.4840 5.9533 17 6 5.2678 -3.6415 6.3241 18 6 3.9590 -3.2969 7.0376 19 1 3.1270 -3.9924 6.9269 20 6 4.0571 -2.5962 8.3942 21 6 2.7485 -2.2520 9.1084 22 6 3.6299 -3.3887 9.6312 23 6 4.0478 -2.3566 -1.0005 24 8 3.9373 -1.4395 -2.1075 25 6 4.0256 -0.2754 -1.2613 26 1 -0.4850 0.8400 0.0004 27 1 4.1463 0.0131 1.5191 28 1 5.2849 -1.2784 1.0674 29 1 3.7773 -3.7751 4.1712 30 1 2.5506 -2.5888 4.6772 31 1 6.1988 -3.3691 6.8212 32 1 5.2966 -4.5638 5.7439 33 1 4.8890 -1.9006 8.5050 34 1 2.7195 -1.3299 9.6890 35 1 1.8173 -2.5243 8.6116 36 1 3.2785 -4.4092 9.4786 37 1 4.1803 -3.2142 10.5556 38 1 5.0733 -2.6385 -0.7621 39 1 3.3734 -3.2103 -1.0662 40 1 3.3336 0.5214 -1.5338 41 1 5.0444 0.0781 -1.1027 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345269041.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:22 Heat of formation + Delta-G solvation = -43.244351 kcal Electronic energy + Delta-G solvation = -21848.285418 eV Core-core repulsion = 18503.761720 eV Total energy + Delta-G solvation = -3344.523698 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.16184 -39.48449 -38.57640 -36.11743 -35.41729 -32.83427 -30.85559 -29.60627 -26.01406 -25.36170 -24.34246 -23.79266 -22.57983 -21.70163 -20.26926 -19.86819 -19.11202 -17.20021 -16.64233 -16.29259 -16.00461 -15.70824 -15.65425 -15.21137 -14.69539 -14.31117 -13.87157 -13.70981 -13.60181 -13.03971 -12.84109 -12.27746 -12.16291 -11.97944 -11.84879 -11.67992 -11.36343 -11.25777 -11.02154 -10.80068 -10.48386 -10.41885 -10.36132 -10.20004 -9.93633 -9.81950 -9.54317 -9.48461 -9.18170 -8.72496 -8.60133 -6.21447 -4.20380 2.69395 3.11864 3.13008 3.20480 3.27774 3.41811 3.99628 4.24578 4.29561 4.55215 4.62202 4.68587 4.83416 5.01428 5.07531 5.12188 5.12515 5.15614 5.32031 5.43889 5.49204 5.63535 5.66927 5.69823 5.75060 5.76381 5.84313 5.91286 5.95351 5.97523 6.00993 6.09639 6.19881 6.27080 6.32702 6.60122 6.91909 6.96808 7.14919 7.53504 8.28858 8.39556 8.83090 9.38117 10.91098 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023121 B = 0.003899 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.717949 B = 7179.729725 C = 7739.280210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.077 3.923 3 Si 0.866 3.134 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.257 1.257 7 C -0.483 4.483 8 H 0.086 0.914 9 C -0.005 4.005 10 C 0.067 3.933 11 O -0.322 6.322 12 C 0.456 3.544 13 O -0.526 6.526 14 C -0.085 4.085 15 C -0.136 4.136 16 H 0.120 0.880 17 C -0.170 4.170 18 C -0.118 4.118 19 H 0.107 0.893 20 C -0.122 4.122 21 C -0.178 4.178 22 C -0.179 4.179 23 C 0.040 3.960 24 O -0.370 6.370 25 C 0.023 3.977 26 H 0.267 0.733 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.485 -6.235 14.097 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.126 4.126 3 Si 0.696 3.304 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.182 1.182 7 C -0.520 4.520 8 H 0.104 0.896 9 C -0.006 4.006 10 C -0.007 4.007 11 O -0.237 6.237 12 C 0.300 3.700 13 O -0.416 6.416 14 C -0.122 4.122 15 C -0.154 4.154 16 H 0.138 0.862 17 C -0.207 4.207 18 C -0.136 4.136 19 H 0.125 0.875 20 C -0.140 4.140 21 C -0.215 4.215 22 C -0.216 4.216 23 C -0.037 4.037 24 O -0.288 6.288 25 C -0.054 4.054 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.121 0.879 30 H 0.128 0.872 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.486 -5.889 13.844 17.273 hybrid contribution 0.503 1.198 0.181 1.312 sum 8.989 -4.692 14.025 17.307 Atomic orbital electron populations 1.69856 1.06076 1.27125 1.49314 1.24937 0.94746 0.98675 0.94260 0.87294 0.80817 0.84402 0.77881 1.20186 1.21659 1.18206 1.20295 0.86147 0.95284 1.50256 0.89561 1.21648 0.98599 0.92215 0.88144 1.23808 0.94685 0.93540 0.88634 1.86601 1.60272 1.59528 1.17284 1.23532 0.78728 0.83687 0.84089 1.90587 1.33293 1.35373 1.82353 1.20870 1.02051 0.98936 0.90353 1.22216 1.02373 0.98546 0.92281 0.86164 1.23154 0.94660 0.99422 1.03438 1.21859 0.98971 1.01984 0.90787 0.87539 1.21717 0.98911 1.02235 0.91149 1.22959 0.95057 0.99642 1.03792 1.22940 1.04164 0.96972 0.97480 1.24028 0.98393 0.95246 0.86070 1.89570 1.94365 1.16841 1.28065 1.24264 0.98778 0.91356 0.91003 0.92329 0.91274 0.93389 0.87921 0.87164 0.88689 0.88529 0.87837 0.88839 0.88551 0.88763 0.88959 0.92342 0.89394 0.89851 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.96 55.43 0.77 -25.60 16 2 C 0.08 2.15 5.43 -17.82 -0.10 2.05 16 3 Si 0.87 20.94 23.79 -169.99 -4.04 16.90 16 4 H -0.27 -6.47 6.78 56.52 0.38 -6.08 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.26 -5.80 4.72 56.52 0.27 -5.53 16 7 C -0.48 -13.10 8.43 -34.44 -0.29 -13.39 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 C 0.00 -0.11 0.57 -154.58 -0.09 -0.20 16 10 C 0.07 1.43 4.82 37.16 0.18 1.61 16 11 O -0.32 -6.69 9.63 -39.25 -0.38 -7.07 16 12 C 0.46 8.29 7.94 36.01 0.29 8.57 16 13 O -0.53 -10.64 15.20 -18.75 -0.29 -10.93 16 14 C -0.08 -1.12 6.09 -27.88 -0.17 -1.29 16 15 C -0.14 -1.64 5.18 -90.58 -0.47 -2.11 16 16 H 0.12 1.68 7.24 -51.93 -0.38 1.30 16 17 C -0.17 -1.69 9.90 -26.69 -0.26 -1.95 16 18 C -0.12 -1.16 5.57 -90.62 -0.50 -1.67 16 19 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 20 C -0.12 -1.14 5.84 -90.62 -0.53 -1.67 16 21 C -0.18 -1.55 10.25 -26.71 -0.27 -1.82 16 22 C -0.18 -1.42 10.25 -26.71 -0.27 -1.69 16 23 C 0.04 0.81 8.34 37.61 0.31 1.12 16 24 O -0.37 -8.42 12.40 -35.23 -0.44 -8.86 16 25 C 0.02 0.50 6.53 37.61 0.25 0.74 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.07 1.56 5.50 -51.93 -0.29 1.28 16 28 H 0.05 0.91 7.89 -51.93 -0.41 0.50 16 29 H 0.10 1.14 7.88 -51.93 -0.41 0.73 16 30 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.10 0.86 8.03 -51.93 -0.42 0.45 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 1.01 7.93 -51.93 -0.41 0.60 16 39 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 40 H 0.08 1.95 3.82 -51.93 -0.20 1.75 16 41 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -31.07 334.73 -7.70 -38.77 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.44 Total: 3.42 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -1.94 Total: -11.68 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.77 Total: -25.60 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -1.10 Total: -26.85 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.04 Total: 16.90 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.07 -7.70 -38.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345269041.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.471 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds