Wall clock time and date at job start Tue Mar 31 2020 01:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47237 * 275.40933 * 3 2 1 5 5 H 1.48499 * 109.47280 * 35.40952 * 3 2 1 6 6 H 1.48503 * 109.47461 * 155.40890 * 3 2 1 7 7 C 1.37873 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00248 * 353.72344 * 7 2 1 9 9 C 1.50706 * 119.99907 * 173.72929 * 7 2 1 10 10 C 1.52995 * 113.00255 * 85.90332 * 9 7 2 11 11 O 1.45199 * 109.47118 * 46.04566 * 10 9 7 12 12 C 1.34226 * 117.00388 * 184.58038 * 11 10 9 13 13 O 1.20827 * 119.99915 * 5.25655 * 12 11 10 14 14 C 1.50700 * 120.00381 * 185.25950 * 12 11 10 15 15 C 1.53002 * 109.47431 * 174.82153 * 14 12 11 16 16 H 1.08997 * 115.54766 * 29.33164 * 15 14 12 17 17 C 1.53070 * 117.49298 * 243.60237 * 15 14 12 18 18 C 1.52998 * 117.50079 * 174.99773 * 15 14 12 19 19 H 1.09007 * 117.49490 * 359.97438 * 18 15 14 20 20 C 1.53000 * 117.50065 * 214.98126 * 18 15 14 21 21 C 1.53000 * 117.52035 * 111.37134 * 20 18 15 22 22 C 1.52997 * 117.49847 * 180.02562 * 20 18 15 23 23 C 1.54030 * 113.92526 * 217.83905 * 9 7 2 24 24 O 1.44179 * 85.52154 * 91.65910 * 23 9 7 25 25 C 1.44183 * 93.33794 * 24.19079 * 24 23 9 26 26 H 0.96999 * 120.00275 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47483 * 286.04923 * 10 9 7 28 28 H 1.08995 * 109.47302 * 166.04577 * 10 9 7 29 29 H 1.09003 * 109.46971 * 54.82114 * 14 12 11 30 30 H 1.08998 * 109.47280 * 294.82199 * 14 12 11 31 31 H 1.09001 * 117.51151 * 145.03794 * 17 15 14 32 32 H 1.08998 * 117.49988 * 359.97438 * 17 15 14 33 33 H 1.08998 * 115.54878 * 325.66704 * 20 18 15 34 34 H 1.08998 * 117.49849 * 214.97309 * 21 20 18 35 35 H 1.09002 * 117.49424 * 359.97438 * 21 20 18 36 36 H 1.09000 * 117.50176 * 359.97125 * 22 20 18 37 37 H 1.08995 * 117.50167 * 145.00167 * 22 20 18 38 38 H 1.09001 * 113.86422 * 205.80627 * 23 9 7 39 39 H 1.08999 * 113.86753 * 337.50914 * 23 9 7 40 40 H 1.08998 * 113.86296 * 221.66547 * 25 24 23 41 41 H 1.08993 * 113.86351 * 89.95952 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3823 2.1124 -1.3938 5 1 1.5084 2.6169 0.8112 6 1 3.5992 1.4099 0.5826 7 6 2.0045 -1.1940 -0.0005 8 1 1.4693 -2.1266 0.1013 9 6 3.5048 -1.1979 -0.1431 10 6 4.2326 -1.0229 1.1912 11 8 3.6363 -1.8964 2.1860 12 6 4.0994 -1.7956 3.4418 13 8 4.9054 -0.9399 3.7215 14 6 3.6144 -2.7496 4.5028 15 6 4.3867 -2.5045 5.8007 16 1 4.7376 -1.4840 5.9533 17 6 5.2678 -3.6415 6.3241 18 6 3.9590 -3.2969 7.0376 19 1 3.1270 -3.9924 6.9269 20 6 4.0571 -2.5962 8.3942 21 6 2.7485 -2.2520 9.1084 22 6 3.6299 -3.3887 9.6312 23 6 4.0478 -2.3566 -1.0005 24 8 3.9373 -1.4395 -2.1075 25 6 4.0256 -0.2754 -1.2613 26 1 -0.4850 0.8400 0.0004 27 1 4.1463 0.0131 1.5191 28 1 5.2849 -1.2784 1.0674 29 1 3.7773 -3.7751 4.1712 30 1 2.5506 -2.5888 4.6772 31 1 6.1988 -3.3691 6.8212 32 1 5.2966 -4.5638 5.7439 33 1 4.8890 -1.9006 8.5050 34 1 2.7195 -1.3299 9.6890 35 1 1.8173 -2.5243 8.6116 36 1 3.2785 -4.4092 9.4786 37 1 4.1803 -3.2142 10.5556 38 1 5.0733 -2.6385 -0.7621 39 1 3.3734 -3.2103 -1.0662 40 1 3.3336 0.5214 -1.5338 41 1 5.0444 0.0781 -1.1027 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345269041.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:22 Heat of formation + Delta-G solvation = -61.806133 kcal Electronic energy + Delta-G solvation = -21849.090317 eV Core-core repulsion = 18503.761720 eV Total energy + Delta-G solvation = -3345.328597 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.72789 -41.03242 -39.46247 -37.46710 -36.38940 -34.87660 -32.62229 -30.79620 -27.70294 -27.21601 -26.08432 -24.55029 -23.29223 -22.82050 -21.16407 -21.02566 -20.84938 -18.72535 -18.30945 -17.99600 -17.59975 -17.25668 -16.55425 -16.47376 -16.19659 -15.76833 -15.45841 -14.96751 -14.88949 -14.58287 -14.10613 -13.85760 -13.71536 -13.22969 -12.86027 -12.62338 -12.37248 -12.35108 -12.23658 -12.12167 -12.10278 -12.07929 -11.91855 -11.51855 -11.39943 -11.37423 -10.98553 -10.70967 -10.67866 -10.42366 -10.27487 -8.35882 -6.38260 1.20566 1.25950 1.28681 1.34252 1.81190 2.22754 2.59411 2.77712 3.13119 3.24497 3.44178 3.56243 3.77188 3.88451 3.99098 4.09786 4.14993 4.25337 4.26307 4.32802 4.34399 4.39111 4.41451 4.44780 4.54246 4.57708 4.69223 4.76506 4.82942 4.93746 4.94594 5.06324 5.22236 5.23164 5.28797 5.29667 5.32014 5.41382 5.55995 5.67654 6.21490 6.63713 6.86766 7.23595 8.80414 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023121 B = 0.003899 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.717949 B = 7179.729725 C = 7739.280210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.021 3.979 3 Si 0.918 3.082 4 H -0.263 1.263 5 H -0.297 1.297 6 H -0.229 1.229 7 C -0.481 4.481 8 H 0.045 0.955 9 C -0.020 4.020 10 C 0.071 3.929 11 O -0.341 6.341 12 C 0.452 3.548 13 O -0.549 6.549 14 C -0.076 4.076 15 C -0.157 4.157 16 H 0.096 0.904 17 C -0.159 4.159 18 C -0.104 4.104 19 H 0.118 0.882 20 C -0.138 4.138 21 C -0.185 4.185 22 C -0.165 4.165 23 C 0.049 3.951 24 O -0.391 6.391 25 C 0.024 3.976 26 H 0.267 0.733 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.129 0.871 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.772 -6.948 15.073 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.177 4.177 3 Si 0.745 3.255 4 H -0.190 1.190 5 H -0.225 1.225 6 H -0.153 1.153 7 C -0.518 4.518 8 H 0.064 0.936 9 C -0.021 4.021 10 C -0.003 4.003 11 O -0.256 6.256 12 C 0.297 3.703 13 O -0.440 6.440 14 C -0.113 4.113 15 C -0.175 4.175 16 H 0.114 0.886 17 C -0.196 4.196 18 C -0.122 4.122 19 H 0.135 0.865 20 C -0.156 4.156 21 C -0.222 4.222 22 C -0.201 4.201 23 C -0.027 4.027 24 O -0.310 6.310 25 C -0.052 4.052 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.146 0.854 30 H 0.133 0.867 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.801 -6.621 14.824 19.500 hybrid contribution -0.230 1.319 -0.079 1.341 sum 10.571 -5.303 14.745 18.902 Atomic orbital electron populations 1.70002 1.07944 1.27970 1.51854 1.25718 0.95395 1.02358 0.94263 0.86430 0.80772 0.79852 0.78460 1.18970 1.22489 1.15307 1.20451 0.88867 0.93581 1.48937 0.93644 1.21626 0.95946 0.94685 0.89880 1.23621 0.95970 0.92978 0.87737 1.86614 1.61037 1.59538 1.18451 1.24448 0.78078 0.83967 0.83769 1.90569 1.34457 1.36560 1.82439 1.20996 1.02236 0.98886 0.89216 1.22066 1.04425 0.98187 0.92851 0.88593 1.23259 0.94760 0.98775 1.02794 1.21913 0.99349 1.00997 0.89944 0.86452 1.21756 0.99185 1.03060 0.91609 1.23026 0.94797 1.00408 1.03996 1.23014 1.03110 0.96999 0.97022 1.24165 1.00522 0.94036 0.84020 1.89549 1.94750 1.17616 1.29072 1.24379 1.00567 0.90651 0.89645 0.92430 0.92849 0.90332 0.85355 0.86664 0.88317 0.87014 0.88332 0.88534 0.88691 0.87959 0.87884 0.88044 0.89956 0.91519 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.86 13.96 21.45 0.30 -57.56 16 2 C 0.02 1.18 5.43 84.65 0.46 1.64 16 3 Si 0.92 43.11 23.79 68.60 1.63 44.74 16 4 H -0.26 -11.80 6.78 99.48 0.67 -11.13 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.23 -9.66 4.72 99.48 0.47 -9.19 16 7 C -0.48 -26.57 8.43 25.60 0.22 -26.35 16 8 H 0.05 2.80 8.06 -2.91 -0.02 2.78 16 9 C -0.02 -0.90 0.57 -52.23 -0.03 -0.93 16 10 C 0.07 2.87 4.82 71.98 0.35 3.22 16 11 O -0.34 -13.82 9.63 -51.38 -0.49 -14.32 16 12 C 0.45 15.97 7.94 71.24 0.57 16.53 16 13 O -0.55 -21.76 15.20 21.96 0.33 -21.43 16 14 C -0.08 -1.91 6.09 29.85 0.18 -1.73 16 15 C -0.16 -3.59 5.18 -10.77 -0.06 -3.65 16 16 H 0.10 2.69 7.24 -2.39 -0.02 2.67 16 17 C -0.16 -2.79 9.90 30.62 0.30 -2.49 16 18 C -0.10 -1.85 5.57 -10.79 -0.06 -1.91 16 19 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 20 C -0.14 -2.36 5.84 -10.79 -0.06 -2.43 16 21 C -0.19 -2.98 10.25 30.61 0.31 -2.66 16 22 C -0.16 -2.25 10.25 30.61 0.31 -1.94 16 23 C 0.05 1.87 8.34 72.27 0.60 2.48 16 24 O -0.39 -16.96 12.40 -148.98 -1.85 -18.81 16 25 C 0.02 0.99 6.53 72.28 0.47 1.46 16 26 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 27 H 0.05 2.30 5.50 -2.38 -0.01 2.29 16 28 H 0.08 2.68 7.89 -2.39 -0.02 2.66 16 29 H 0.13 2.53 7.88 -2.39 -0.02 2.51 16 30 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.11 1.63 8.03 -2.39 -0.02 1.61 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.10 3.05 7.93 -2.39 -0.02 3.03 16 39 H 0.08 3.21 8.09 -2.39 -0.02 3.19 16 40 H 0.07 2.98 3.82 -2.39 -0.01 2.97 16 41 H 0.10 3.42 8.10 -2.39 -0.02 3.40 16 Total: -1.00 -69.04 334.73 4.24 -64.80 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.75 Total: 21.32 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 3.57 Total: -18.74 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.30 Total: -57.56 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -2.01 Total: -54.55 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.63 Total: 44.74 kcal Total: -69.04 4.24 -64.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345269041.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.991 kcal (2) G-P(sol) polarization free energy of solvation -69.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds