Wall clock time and date at job start Tue Mar 31 2020 01:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00346 * 2 1 4 4 H 1.48504 * 109.46884 * 239.99972 * 3 2 1 5 5 H 1.48496 * 109.47396 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47166 * 119.99989 * 3 2 1 7 7 C 1.37883 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99535 * 173.41423 * 7 2 1 9 9 C 1.50695 * 119.99867 * 353.41666 * 7 2 1 10 10 C 1.53006 * 113.00108 * 294.99849 * 9 7 2 11 11 O 1.45200 * 109.47344 * 298.95343 * 10 9 7 12 12 C 1.34229 * 116.99866 * 179.97438 * 11 10 9 13 13 O 1.20823 * 119.99881 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99903 * 179.97438 * 12 11 10 15 15 H 1.08999 * 115.55801 * 62.59480 * 14 12 11 16 16 C 1.53082 * 117.51219 * 208.32171 * 14 12 11 17 17 C 1.52557 * 117.50976 * 276.88012 * 14 12 11 18 18 C 1.53877 * 120.82252 * 142.33214 * 17 14 12 19 19 C 1.54990 * 104.06010 * 192.35806 * 18 17 14 20 20 C 1.54925 * 102.82144 * 37.57023 * 19 18 17 21 21 C 1.53484 * 121.08858 * 2.96696 * 17 14 12 22 22 C 1.54035 * 113.81528 * 163.18065 * 9 7 2 23 23 O 1.44441 * 85.42744 * 223.23168 * 22 9 7 24 24 C 1.44180 * 93.37637 * 24.08909 * 23 22 9 25 25 H 0.96992 * 120.00589 * 181.01995 * 1 2 3 26 26 H 1.09010 * 109.46123 * 58.94802 * 10 9 7 27 27 H 1.08998 * 109.47492 * 178.94278 * 10 9 7 28 28 H 1.09005 * 117.51280 * 214.91547 * 16 14 12 29 29 H 1.08996 * 117.50798 * 359.97438 * 16 14 12 30 30 H 1.08999 * 110.51266 * 311.00560 * 18 17 14 31 31 H 1.09004 * 110.51053 * 73.71972 * 18 17 14 32 32 H 1.09000 * 110.74747 * 279.23542 * 19 18 17 33 33 H 1.09000 * 110.89930 * 155.97352 * 19 18 17 34 34 H 1.08994 * 110.48341 * 203.58781 * 20 19 18 35 35 H 1.09001 * 110.59076 * 81.01517 * 20 19 18 36 36 H 1.09000 * 110.06815 * 263.30669 * 21 17 14 37 37 H 1.09002 * 110.06909 * 24.78463 * 21 17 14 38 38 H 1.09003 * 113.86691 * 337.34237 * 22 9 7 39 39 H 1.09002 * 113.86997 * 109.04330 * 22 9 7 40 40 H 1.09003 * 113.86165 * 221.77063 * 24 23 22 41 41 H 1.08994 * 113.98784 * 90.07972 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0791 -1.1973 -0.1067 9 6 1.2583 -2.4948 0.1507 10 6 0.5753 -2.6384 1.5123 11 8 1.5774 -2.6044 2.5625 12 6 1.1398 -2.7186 3.8263 13 8 -0.0415 -2.8423 4.0477 14 6 2.1219 -2.6923 4.9691 15 1 2.6875 -1.7674 5.0819 16 6 1.7432 -3.4497 6.2444 17 6 2.8286 -3.9978 5.3210 18 6 4.3044 -4.0028 5.7564 19 6 4.7078 -5.4984 5.7025 20 6 3.9508 -6.0138 4.4529 21 6 2.5979 -5.2712 4.4958 22 6 2.0741 -3.7320 -0.2693 23 8 0.8601 -4.1686 -0.9188 24 6 0.3432 -2.8283 -1.0425 25 1 -0.4850 -0.8398 0.0150 26 1 -0.1278 -1.8176 1.6543 27 1 0.0395 -3.5868 1.5519 28 1 2.0602 -3.0232 7.1962 29 1 0.7836 -3.9664 6.2569 30 1 4.9093 -3.4188 5.0628 31 1 4.4047 -3.6166 6.7708 32 1 4.3738 -6.0209 6.5989 33 1 5.7847 -5.6062 5.5732 34 1 3.7970 -7.0909 4.5175 35 1 4.4958 -5.7612 3.5433 36 1 1.8436 -5.8956 4.9746 37 1 2.2812 -5.0103 3.4860 38 1 2.8882 -3.5100 -0.9594 39 1 2.3806 -4.3625 0.5653 40 1 -0.7204 -2.7436 -0.8196 41 1 0.6260 -2.3280 -1.9686 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345280446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:11 Heat of formation + Delta-G solvation = -106.465969 kcal Electronic energy + Delta-G solvation = -22931.762089 eV Core-core repulsion = 19584.496896 eV Total energy + Delta-G solvation = -3347.265193 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.98137 -41.22531 -39.70114 -37.52402 -35.34470 -35.16031 -31.53582 -29.72513 -28.01618 -27.48884 -26.64965 -26.11444 -25.05979 -21.97428 -21.28216 -20.83120 -19.97548 -19.29540 -18.58076 -17.71834 -17.49787 -16.78182 -16.60328 -16.32605 -16.22292 -15.93259 -15.57268 -14.77106 -14.48360 -14.24183 -13.94788 -13.82032 -13.52508 -13.35005 -13.25023 -12.97988 -12.70935 -12.38377 -12.13169 -12.04818 -11.97757 -11.88430 -11.82254 -11.63345 -11.46565 -11.42689 -11.31143 -10.74172 -10.71231 -10.66528 -10.29855 -8.61306 -6.37501 1.04863 1.54004 1.59726 1.60550 1.79410 2.54201 2.57926 2.84098 3.11709 3.32797 3.47544 3.65027 3.72977 3.83360 3.93175 3.96868 4.15624 4.21225 4.28432 4.37777 4.42951 4.47986 4.52170 4.62317 4.67669 4.70239 4.81488 4.84589 4.91784 4.99253 5.00281 5.08653 5.20548 5.21588 5.21887 5.23637 5.32380 5.48789 5.50349 5.92004 6.12530 6.53876 6.69458 7.39280 8.74351 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017030 B = 0.005651 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.760817 B = 4953.950953 C = 5467.603022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.019 4.019 3 Si 1.107 2.893 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.589 4.589 8 H 0.057 0.943 9 C -0.015 4.015 10 C 0.108 3.892 11 O -0.336 6.336 12 C 0.481 3.519 13 O -0.551 6.551 14 C -0.176 4.176 15 H 0.153 0.847 16 C -0.119 4.119 17 C -0.093 4.093 18 C -0.086 4.086 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.104 4.104 22 C 0.056 3.944 23 O -0.409 6.409 24 C 0.053 3.947 25 H 0.261 0.739 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.143 0.857 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.036 0.964 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.316 -8.516 12.246 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.219 4.219 3 Si 0.929 3.071 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.627 4.627 8 H 0.075 0.925 9 C -0.016 4.016 10 C 0.034 3.966 11 O -0.251 6.251 12 C 0.326 3.674 13 O -0.443 6.443 14 C -0.195 4.195 15 H 0.171 0.829 16 C -0.156 4.156 17 C -0.093 4.093 18 C -0.124 4.124 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.142 4.142 22 C -0.020 4.020 23 O -0.329 6.329 24 C -0.024 4.024 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.161 0.839 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.668 -7.184 12.155 17.112 hybrid contribution -0.805 -1.216 -0.496 1.540 sum 8.863 -8.400 11.659 16.883 Atomic orbital electron populations 1.70967 1.07831 1.30394 1.47658 1.27070 0.96439 1.05977 0.92405 0.83050 0.74301 0.71705 0.77999 1.19087 1.21420 1.19942 1.21956 0.95006 0.91391 1.54331 0.92461 1.21226 0.94236 0.96723 0.89425 1.22676 0.89090 0.98630 0.86247 1.86509 1.41183 1.81882 1.15493 1.23539 0.88593 0.70889 0.84350 1.90580 1.20205 1.47576 1.85894 1.22008 1.02460 1.01479 0.93518 0.82927 1.23330 0.99159 0.99847 0.93232 1.22109 0.96335 0.90842 1.00055 1.22009 0.89955 0.98104 1.02286 1.22467 1.00572 0.94410 0.97641 1.22339 0.94146 0.99940 0.99303 1.21797 0.99663 0.94791 0.97909 1.24005 0.88506 0.93771 0.95728 1.89486 1.34164 1.26960 1.82274 1.24004 0.98222 0.81203 0.98966 0.92802 0.93834 0.93714 0.83897 0.89065 0.90859 0.88885 0.90118 0.89743 0.90350 0.91922 0.91155 0.94551 0.89540 0.89651 0.91274 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.29 13.06 21.45 0.28 -54.01 16 2 C -0.02 -1.06 5.30 84.66 0.45 -0.61 16 3 Si 1.11 48.45 29.91 68.60 2.05 50.50 16 4 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.59 -31.22 8.14 25.60 0.21 -31.01 16 8 H 0.06 2.99 7.82 -2.91 -0.02 2.97 16 9 C -0.02 -0.75 0.45 -52.23 -0.02 -0.78 16 10 C 0.11 5.35 4.44 71.98 0.32 5.67 16 11 O -0.34 -15.50 9.90 -51.40 -0.51 -16.01 16 12 C 0.48 19.90 6.40 71.24 0.46 20.36 16 13 O -0.55 -25.76 16.38 21.97 0.36 -25.41 16 14 C -0.18 -5.19 6.14 -11.66 -0.07 -5.27 16 15 H 0.15 3.98 8.14 -2.39 -0.02 3.96 16 16 C -0.12 -2.68 9.76 30.51 0.30 -2.38 16 17 C -0.09 -2.16 2.45 -51.98 -0.13 -2.29 16 18 C -0.09 -1.44 6.58 31.57 0.21 -1.24 16 19 C -0.11 -1.64 6.91 31.93 0.22 -1.42 16 20 C -0.12 -2.28 6.84 31.72 0.22 -2.07 16 21 C -0.10 -2.62 6.19 31.23 0.19 -2.43 16 22 C 0.06 2.40 8.35 72.30 0.60 3.01 16 23 O -0.41 -18.57 12.38 -148.98 -1.84 -20.41 16 24 C 0.05 2.51 7.06 72.29 0.51 3.02 16 25 H 0.26 15.17 4.76 -92.71 -0.44 14.73 16 26 H 0.04 2.41 6.47 -2.38 -0.02 2.40 16 27 H 0.04 2.17 8.08 -2.39 -0.02 2.15 16 28 H 0.14 2.18 8.14 -2.38 -0.02 2.16 16 29 H 0.09 2.33 7.95 -2.39 -0.02 2.31 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.15 8.11 -2.39 -0.02 1.13 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 37 H 0.04 1.15 7.17 -2.39 -0.02 1.13 16 38 H 0.09 3.48 8.09 -2.39 -0.02 3.46 16 39 H 0.09 3.37 8.10 -2.39 -0.02 3.36 16 40 H 0.07 3.23 7.60 -2.39 -0.02 3.21 16 41 H 0.08 3.70 8.09 -2.39 -0.02 3.68 16 Total: -1.00 -66.59 335.34 5.13 -61.46 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 1.33 Total: 21.30 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 3.46 Total: -17.42 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.28 Total: -54.01 kcal Atomic # 8 Polarization: -59.84 SS G_CDS: -1.99 Total: -61.83 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.05 Total: 50.50 kcal Total: -66.59 5.13 -61.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345280446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.006 kcal (2) G-P(sol) polarization free energy of solvation -66.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds