Wall clock time and date at job start Tue Mar 31 2020 01:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00114 * 2 1 4 4 H 1.48499 * 109.47200 * 239.99570 * 3 2 1 5 5 H 1.48498 * 109.47132 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47071 * 119.99403 * 3 2 1 7 7 C 1.37873 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00255 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99898 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.47538 * 299.99955 * 9 7 2 11 11 O 1.45205 * 109.46969 * 179.97438 * 9 7 2 12 12 C 1.34231 * 116.99783 * 150.00194 * 11 9 7 13 13 O 1.20828 * 119.99933 * 0.02562 * 12 11 9 14 14 C 1.50701 * 120.00135 * 180.02562 * 12 11 9 15 15 H 1.09002 * 110.80379 * 62.17392 * 14 12 11 16 16 C 1.54806 * 110.90627 * 298.54848 * 14 12 11 17 17 C 1.54105 * 104.18738 * 220.92038 * 16 14 12 18 18 O 1.43748 * 107.29127 * 357.96619 * 17 16 14 19 19 C 1.44382 * 106.97408 * 26.52002 * 18 17 16 20 20 H 1.08998 * 110.62334 * 78.43272 * 19 18 17 21 21 C 1.52998 * 110.61381 * 201.43597 * 19 18 17 22 22 C 1.53000 * 117.50065 * 2.81661 * 21 19 18 23 23 C 1.52994 * 117.50078 * 294.15062 * 21 19 18 24 24 C 1.53006 * 109.47149 * 60.00135 * 9 7 2 25 25 C 1.53000 * 117.49776 * 179.97438 * 24 9 7 26 26 C 1.52997 * 117.49537 * 248.62336 * 24 9 7 27 27 H 0.97007 * 119.99513 * 0.02562 * 1 2 3 28 28 H 1.09000 * 110.48959 * 339.59501 * 16 14 12 29 29 H 1.08997 * 110.49153 * 102.24240 * 16 14 12 30 30 H 1.08996 * 109.87889 * 117.38912 * 17 16 14 31 31 H 1.09000 * 109.87711 * 238.54858 * 17 16 14 32 32 H 1.09003 * 115.54748 * 148.48746 * 21 19 18 33 33 H 1.08993 * 117.49917 * 359.97438 * 22 21 19 34 34 H 1.08998 * 117.50088 * 145.02535 * 22 21 19 35 35 H 1.08999 * 117.50197 * 214.98249 * 23 21 19 36 36 H 1.09002 * 117.49892 * 0.02562 * 23 21 19 37 37 H 1.09002 * 115.56020 * 34.30465 * 24 9 7 38 38 H 1.08990 * 117.49990 * 359.97438 * 25 24 9 39 39 H 1.09004 * 117.49237 * 214.97568 * 25 24 9 40 40 H 1.08999 * 117.49685 * 145.02116 * 26 24 9 41 41 H 1.08999 * 117.52022 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8902 11 8 2.1945 -3.6028 0.0005 12 6 1.8032 -4.7390 0.5985 13 8 0.7083 -4.8092 1.1047 14 6 2.7294 -5.9272 0.6385 15 1 3.6383 -5.6910 1.1919 16 6 3.0646 -6.4147 -0.7920 17 6 3.0237 -7.9516 -0.6866 18 8 2.7443 -8.2784 0.6851 19 6 2.0174 -7.1634 1.2444 20 1 0.9722 -7.1933 0.9368 21 6 2.1316 -7.1568 2.7701 22 6 3.0062 -8.2322 3.4178 23 6 1.4818 -8.3135 3.5322 24 6 0.3718 -2.5804 -1.2491 25 6 -0.4777 -3.8393 -1.4345 26 6 -1.1440 -2.5156 -1.0518 27 1 -0.4850 0.8401 -0.0004 28 1 2.3159 -6.0609 -1.5009 29 1 4.0588 -6.0788 -1.0865 30 1 2.2370 -8.3464 -1.3293 31 1 3.9876 -8.3688 -0.9780 32 1 2.1141 -6.1727 3.2386 33 1 3.4999 -8.9446 2.7570 34 1 3.5638 -7.9558 4.3126 35 1 1.0374 -8.0906 4.5022 36 1 0.9734 -9.0794 2.9466 37 1 0.7831 -2.1146 -2.1446 38 1 -0.4100 -4.6097 -0.6665 39 1 -0.6254 -4.2014 -2.4519 40 1 -1.7299 -2.0074 -1.8175 41 1 -1.5153 -2.4155 -0.0319 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345534431.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:40 Heat of formation + Delta-G solvation = -84.973703 kcal Electronic energy + Delta-G solvation = -22871.491522 eV Core-core repulsion = 19525.158303 eV Total energy + Delta-G solvation = -3346.333218 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.43750 -38.96991 -36.44716 -36.38609 -34.92053 -32.70048 -32.35232 -29.27270 -27.90516 -24.60794 -23.19019 -22.36593 -22.25236 -21.27412 -20.48508 -19.97795 -19.16541 -17.38679 -16.81250 -16.38056 -16.14437 -15.29681 -15.13794 -14.79785 -14.71930 -14.14188 -13.91643 -13.85733 -13.18855 -12.65335 -12.46588 -12.08269 -11.61790 -11.49076 -11.41521 -11.36478 -11.33383 -11.06220 -10.95301 -10.86331 -10.44863 -10.30799 -10.21597 -10.13366 -9.87657 -9.73828 -9.50536 -9.38272 -9.05350 -8.68508 -8.45309 -6.17342 -4.25571 2.88902 3.25160 3.28374 3.29748 3.43390 3.82393 3.86644 4.32025 4.44940 4.63367 4.89308 4.94947 4.99401 5.01797 5.07375 5.15589 5.26739 5.38328 5.56902 5.66116 5.71340 5.72344 5.85138 5.90964 5.93451 5.98346 6.05072 6.13125 6.19016 6.28684 6.35783 6.51201 6.64963 6.84098 6.97438 7.12399 7.23971 7.36975 7.59697 7.82897 8.08431 8.59029 8.85992 9.39220 10.89302 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022624 B = 0.004697 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.306980 B = 5960.449680 C = 6179.871235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.070 3.930 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.068 0.932 9 C 0.249 3.751 10 H 0.048 0.952 11 O -0.349 6.349 12 C 0.465 3.535 13 O -0.513 6.513 14 C -0.113 4.113 15 H 0.117 0.883 16 C -0.143 4.143 17 C 0.049 3.951 18 O -0.371 6.371 19 C 0.127 3.873 20 H 0.088 0.912 21 C -0.149 4.149 22 C -0.168 4.168 23 C -0.173 4.173 24 C -0.114 4.114 25 C -0.230 4.230 26 C -0.123 4.123 27 H 0.265 0.735 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.495 -13.696 0.579 14.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.135 4.135 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.567 4.567 8 H 0.086 0.914 9 C 0.196 3.804 10 H 0.066 0.934 11 O -0.264 6.264 12 C 0.307 3.693 13 O -0.403 6.403 14 C -0.133 4.133 15 H 0.135 0.865 16 C -0.181 4.181 17 C -0.028 4.028 18 O -0.290 6.290 19 C 0.069 3.931 20 H 0.106 0.894 21 C -0.167 4.167 22 C -0.205 4.205 23 C -0.210 4.210 24 C -0.133 4.133 25 C -0.267 4.267 26 C -0.160 4.160 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.134 0.866 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.044 -13.718 0.814 14.325 hybrid contribution 0.167 1.352 -0.259 1.387 sum 4.211 -12.366 0.555 13.075 Atomic orbital electron populations 1.70037 1.05753 1.27133 1.47934 1.24871 0.95023 0.99052 0.94516 0.86423 0.79387 0.81986 0.78836 1.20015 1.21088 1.20043 1.20861 0.93766 0.88404 1.53686 0.91384 1.20221 0.86117 0.80431 0.93581 0.93405 1.86492 1.49223 1.21937 1.68790 1.22824 0.86190 0.84827 0.75416 1.90592 1.22452 1.83419 1.43882 1.22524 0.99584 0.92398 0.98787 0.86456 1.22871 1.04313 0.95281 0.95590 1.23158 1.01298 0.94422 0.83936 1.88841 1.75942 1.40072 1.24194 1.22387 0.95893 0.82870 0.91921 0.89428 1.22228 1.06574 0.95785 0.92079 1.22900 0.93335 1.02086 1.02175 1.22921 0.95767 1.00705 1.01606 1.22602 0.92939 0.97307 1.00474 1.23277 1.09607 0.93048 1.00775 1.22359 0.95545 0.96697 1.01427 0.92550 0.89727 0.89123 0.92155 0.89528 0.86568 0.87764 0.89162 0.88872 0.88757 0.89348 0.88894 0.91073 0.90771 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.95 11.44 55.43 0.63 -23.32 16 2 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 3 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.53 -14.49 8.88 -34.44 -0.31 -14.79 16 8 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.25 6.43 2.25 -27.88 -0.06 6.36 16 10 H 0.05 1.38 6.91 -51.93 -0.36 1.02 16 11 O -0.35 -7.98 9.83 -39.26 -0.39 -8.36 16 12 C 0.46 9.23 6.37 36.01 0.23 9.46 16 13 O -0.51 -11.30 12.85 -18.75 -0.24 -11.54 16 14 C -0.11 -1.71 3.06 -89.77 -0.27 -1.98 16 15 H 0.12 1.64 8.06 -51.93 -0.42 1.22 16 16 C -0.14 -1.80 6.58 -25.20 -0.17 -1.97 16 17 C 0.05 0.54 7.70 37.73 0.29 0.83 16 18 O -0.37 -4.90 9.68 -35.23 -0.34 -5.24 16 19 C 0.13 1.81 2.74 -25.68 -0.07 1.74 16 20 H 0.09 1.38 7.53 -51.93 -0.39 0.99 16 21 C -0.15 -2.00 5.72 -90.62 -0.52 -2.52 16 22 C -0.17 -1.92 9.90 -26.69 -0.26 -2.19 16 23 C -0.17 -2.03 10.25 -26.69 -0.27 -2.31 16 24 C -0.11 -2.76 4.47 -90.62 -0.41 -3.16 16 25 C -0.23 -4.86 9.80 -26.70 -0.26 -5.12 16 26 C -0.12 -2.81 9.05 -26.70 -0.24 -3.05 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.08 1.15 7.85 -51.93 -0.41 0.74 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.12 1.67 8.14 -51.93 -0.42 1.25 16 33 H 0.10 1.21 7.07 -51.93 -0.37 0.85 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 2.20 8.11 -51.93 -0.42 1.78 16 38 H 0.09 2.02 5.37 -51.93 -0.28 1.75 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.09 2.17 8.05 -51.93 -0.42 1.75 16 LS Contribution 335.07 15.07 5.05 5.05 Total: -1.00 -28.87 335.07 -9.13 -38.00 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.41 Total: 6.63 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -2.42 Total: -16.93 kcal Atomic # 7 Polarization: -23.95 SS G_CDS: 0.63 Total: -23.32 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.97 Total: -25.14 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.87 -9.13 -38.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345534431.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.974 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds