Wall clock time and date at job start Tue Mar 31 2020 01:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00114 * 2 1 4 4 H 1.48499 * 109.47200 * 239.99570 * 3 2 1 5 5 H 1.48498 * 109.47132 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47071 * 119.99403 * 3 2 1 7 7 C 1.37873 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00255 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99898 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.47538 * 299.99955 * 9 7 2 11 11 O 1.45205 * 109.46969 * 179.97438 * 9 7 2 12 12 C 1.34231 * 116.99783 * 150.00194 * 11 9 7 13 13 O 1.20828 * 119.99933 * 0.02562 * 12 11 9 14 14 C 1.50701 * 120.00135 * 180.02562 * 12 11 9 15 15 H 1.09002 * 110.80379 * 62.17392 * 14 12 11 16 16 C 1.54806 * 110.90627 * 298.54848 * 14 12 11 17 17 C 1.54105 * 104.18738 * 220.92038 * 16 14 12 18 18 O 1.43748 * 107.29127 * 357.96619 * 17 16 14 19 19 C 1.44382 * 106.97408 * 26.52002 * 18 17 16 20 20 H 1.08998 * 110.62334 * 78.43272 * 19 18 17 21 21 C 1.52998 * 110.61381 * 201.43597 * 19 18 17 22 22 C 1.53000 * 117.50065 * 2.81661 * 21 19 18 23 23 C 1.52994 * 117.50078 * 294.15062 * 21 19 18 24 24 C 1.53006 * 109.47149 * 60.00135 * 9 7 2 25 25 C 1.53000 * 117.49776 * 179.97438 * 24 9 7 26 26 C 1.52997 * 117.49537 * 248.62336 * 24 9 7 27 27 H 0.97007 * 119.99513 * 0.02562 * 1 2 3 28 28 H 1.09000 * 110.48959 * 339.59501 * 16 14 12 29 29 H 1.08997 * 110.49153 * 102.24240 * 16 14 12 30 30 H 1.08996 * 109.87889 * 117.38912 * 17 16 14 31 31 H 1.09000 * 109.87711 * 238.54858 * 17 16 14 32 32 H 1.09003 * 115.54748 * 148.48746 * 21 19 18 33 33 H 1.08993 * 117.49917 * 359.97438 * 22 21 19 34 34 H 1.08998 * 117.50088 * 145.02535 * 22 21 19 35 35 H 1.08999 * 117.50197 * 214.98249 * 23 21 19 36 36 H 1.09002 * 117.49892 * 0.02562 * 23 21 19 37 37 H 1.09002 * 115.56020 * 34.30465 * 24 9 7 38 38 H 1.08990 * 117.49990 * 359.97438 * 25 24 9 39 39 H 1.09004 * 117.49237 * 214.97568 * 25 24 9 40 40 H 1.08999 * 117.49685 * 145.02116 * 26 24 9 41 41 H 1.08999 * 117.52022 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8902 11 8 2.1945 -3.6028 0.0005 12 6 1.8032 -4.7390 0.5985 13 8 0.7083 -4.8092 1.1047 14 6 2.7294 -5.9272 0.6385 15 1 3.6383 -5.6910 1.1919 16 6 3.0646 -6.4147 -0.7920 17 6 3.0237 -7.9516 -0.6866 18 8 2.7443 -8.2784 0.6851 19 6 2.0174 -7.1634 1.2444 20 1 0.9722 -7.1933 0.9368 21 6 2.1316 -7.1568 2.7701 22 6 3.0062 -8.2322 3.4178 23 6 1.4818 -8.3135 3.5322 24 6 0.3718 -2.5804 -1.2491 25 6 -0.4777 -3.8393 -1.4345 26 6 -1.1440 -2.5156 -1.0518 27 1 -0.4850 0.8401 -0.0004 28 1 2.3159 -6.0609 -1.5009 29 1 4.0588 -6.0788 -1.0865 30 1 2.2370 -8.3464 -1.3293 31 1 3.9876 -8.3688 -0.9780 32 1 2.1141 -6.1727 3.2386 33 1 3.4999 -8.9446 2.7570 34 1 3.5638 -7.9558 4.3126 35 1 1.0374 -8.0906 4.5022 36 1 0.9734 -9.0794 2.9466 37 1 0.7831 -2.1146 -2.1446 38 1 -0.4100 -4.6097 -0.6665 39 1 -0.6254 -4.2014 -2.4519 40 1 -1.7299 -2.0074 -1.8175 41 1 -1.5153 -2.4155 -0.0319 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345534431.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:40 Heat of formation + Delta-G solvation = -99.335307 kcal Electronic energy + Delta-G solvation = -22872.114288 eV Core-core repulsion = 19525.158303 eV Total energy + Delta-G solvation = -3346.955984 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.86052 -40.35784 -38.18631 -37.41254 -36.71720 -34.72685 -33.54688 -30.33482 -29.85275 -26.06886 -24.90300 -23.54486 -23.20397 -23.06842 -21.88702 -21.25434 -20.93623 -19.04092 -18.45045 -17.88366 -17.55951 -16.88358 -16.57281 -16.16879 -15.94054 -15.67859 -15.47409 -14.93143 -14.74396 -14.33866 -13.81774 -13.49378 -13.30594 -13.14036 -12.96143 -12.77597 -12.51776 -12.40088 -12.31191 -12.27644 -12.17928 -11.96121 -11.81285 -11.42711 -11.22272 -11.16443 -11.09705 -10.95332 -10.62142 -10.57455 -10.44814 -8.22494 -6.39663 1.28982 1.42090 1.44667 1.52051 1.88876 2.40589 2.73277 2.86820 3.04932 3.20593 3.39697 3.50465 3.81207 3.95601 3.99764 4.06342 4.08742 4.19514 4.22374 4.28982 4.34441 4.42408 4.56805 4.70959 4.75494 4.78238 4.81086 4.84506 4.94492 4.99609 5.06581 5.09825 5.22052 5.23979 5.35476 5.37429 5.47192 5.54792 5.81311 5.84167 6.13064 6.62902 6.97326 7.30295 8.83466 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022624 B = 0.004697 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.306980 B = 5960.449680 C = 6179.871235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.027 3.973 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.558 4.558 8 H 0.063 0.937 9 C 0.255 3.745 10 H 0.007 0.993 11 O -0.357 6.357 12 C 0.461 3.539 13 O -0.539 6.539 14 C -0.110 4.110 15 H 0.131 0.869 16 C -0.140 4.140 17 C 0.049 3.951 18 O -0.373 6.373 19 C 0.135 3.865 20 H 0.067 0.933 21 C -0.174 4.174 22 C -0.149 4.149 23 C -0.170 4.170 24 C -0.131 4.131 25 C -0.199 4.199 26 C -0.124 4.124 27 H 0.267 0.733 28 H 0.073 0.927 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.784 -14.715 -0.132 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.175 4.175 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.595 4.595 8 H 0.082 0.918 9 C 0.202 3.798 10 H 0.024 0.976 11 O -0.274 6.274 12 C 0.306 3.694 13 O -0.430 6.430 14 C -0.129 4.129 15 H 0.149 0.851 16 C -0.178 4.178 17 C -0.028 4.028 18 O -0.292 6.292 19 C 0.077 3.923 20 H 0.085 0.915 21 C -0.192 4.192 22 C -0.186 4.186 23 C -0.207 4.207 24 C -0.150 4.150 25 C -0.235 4.235 26 C -0.161 4.161 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.128 0.872 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.339 -14.765 0.099 15.701 hybrid contribution -0.257 1.612 -0.003 1.632 sum 5.082 -13.152 0.096 14.100 Atomic orbital electron populations 1.70154 1.07002 1.28016 1.47858 1.25692 0.95915 1.02228 0.93698 0.85396 0.78224 0.77662 0.79069 1.19138 1.20379 1.19653 1.21145 0.93777 0.89742 1.54828 0.91849 1.19842 0.86137 0.81227 0.92624 0.97572 1.86480 1.48749 1.22463 1.69663 1.23764 0.86682 0.84892 0.74066 1.90575 1.23999 1.83684 1.44731 1.22640 0.98806 0.90314 1.01127 0.85145 1.22930 1.04948 0.96535 0.93355 1.23350 1.03318 0.93094 0.82991 1.88840 1.75631 1.39379 1.25352 1.22168 0.94821 0.82808 0.92494 0.91474 1.22178 1.09425 0.95839 0.91764 1.22949 0.93112 1.00361 1.02188 1.23006 0.96416 0.99547 1.01684 1.22405 0.93267 0.99905 0.99383 1.23257 1.06402 0.91654 1.02217 1.22282 0.94885 0.98388 1.00592 0.92384 0.90867 0.87248 0.91177 0.86548 0.88233 0.87524 0.87651 0.87906 0.88580 0.90169 0.89697 0.87782 0.89265 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.97 11.44 21.45 0.25 -49.73 16 2 C 0.03 1.46 5.30 84.65 0.45 1.91 16 3 Si 0.97 42.54 29.54 68.60 2.03 44.56 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.56 -31.29 8.88 25.60 0.23 -31.07 16 8 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 9 C 0.25 13.65 2.25 29.85 0.07 13.72 16 10 H 0.01 0.40 6.91 -2.39 -0.02 0.38 16 11 O -0.36 -16.81 9.83 -51.42 -0.51 -17.32 16 12 C 0.46 18.80 6.37 71.24 0.45 19.25 16 13 O -0.54 -24.73 12.85 21.96 0.28 -24.44 16 14 C -0.11 -3.24 3.06 -10.24 -0.03 -3.28 16 15 H 0.13 3.53 8.06 -2.39 -0.02 3.51 16 16 C -0.14 -3.28 6.58 31.58 0.21 -3.07 16 17 C 0.05 0.94 7.70 72.36 0.56 1.49 16 18 O -0.37 -9.05 9.68 -148.98 -1.44 -10.50 16 19 C 0.13 3.78 2.74 31.28 0.09 3.87 16 20 H 0.07 2.15 7.53 -2.39 -0.02 2.13 16 21 C -0.17 -4.62 5.72 -10.80 -0.06 -4.68 16 22 C -0.15 -3.14 9.90 30.62 0.30 -2.84 16 23 C -0.17 -3.80 10.25 30.62 0.31 -3.48 16 24 C -0.13 -6.42 4.47 -10.79 -0.05 -6.46 16 25 C -0.20 -8.32 9.80 30.61 0.30 -8.02 16 26 C -0.12 -5.75 9.05 30.61 0.28 -5.48 16 27 H 0.27 14.13 8.31 -92.70 -0.77 13.35 16 28 H 0.07 1.89 7.85 -2.39 -0.02 1.88 16 29 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.11 2.22 7.07 -2.39 -0.02 2.20 16 34 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.08 4.04 8.11 -2.39 -0.02 4.02 16 38 H 0.08 3.73 5.37 -2.39 -0.01 3.71 16 39 H 0.10 3.68 8.14 -2.38 -0.02 3.66 16 40 H 0.09 3.81 8.14 -2.39 -0.02 3.79 16 41 H 0.06 3.27 8.05 -2.39 -0.02 3.25 16 Total: -1.00 -63.58 335.07 4.72 -58.86 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 1.01 Total: 26.69 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: 3.10 Total: -28.13 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.25 Total: -49.73 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -1.66 Total: -52.26 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -63.58 4.72 -58.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345534431.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.471 kcal (2) G-P(sol) polarization free energy of solvation -63.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds