Wall clock time and date at job start Tue Mar 31 2020 01:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99825 * 2 1 4 4 H 1.48503 * 109.47003 * 269.99796 * 3 2 1 5 5 H 1.48492 * 109.47470 * 29.99938 * 3 2 1 6 6 H 1.48502 * 109.46933 * 150.00215 * 3 2 1 7 7 C 1.37872 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99774 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00316 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.46565 * 60.00108 * 9 7 2 11 11 O 1.45201 * 109.47105 * 179.97438 * 9 7 2 12 12 C 1.34225 * 116.99621 * 209.99947 * 11 9 7 13 13 O 1.20821 * 120.00597 * 0.02562 * 12 11 9 14 14 C 1.50705 * 119.99797 * 180.02562 * 12 11 9 15 15 H 1.08996 * 110.45646 * 61.14948 * 14 12 11 16 16 C 1.54517 * 110.51019 * 298.54984 * 14 12 11 17 17 C 1.54479 * 104.06037 * 241.21470 * 16 14 12 18 18 O 1.44433 * 104.80518 * 336.02227 * 17 16 14 19 19 C 1.44422 * 105.27452 * 40.51075 * 18 17 16 20 20 H 1.09001 * 110.37394 * 78.31441 * 19 18 17 21 21 C 1.52999 * 110.46816 * 200.61059 * 19 18 17 22 22 C 1.52996 * 117.49554 * 4.18325 * 21 19 18 23 23 C 1.53002 * 117.49607 * 295.52267 * 21 19 18 24 24 C 1.52993 * 109.46939 * 300.00092 * 9 7 2 25 25 C 1.53001 * 117.50019 * 248.61837 * 24 9 7 26 26 C 1.53000 * 60.00304 * 252.51237 * 25 24 9 27 27 H 0.97004 * 120.00188 * 0.02562 * 1 2 3 28 28 H 1.08991 * 110.51174 * 359.85870 * 16 14 12 29 29 H 1.08995 * 110.51247 * 122.57349 * 16 14 12 30 30 H 1.08997 * 110.37024 * 94.85221 * 17 16 14 31 31 H 1.08995 * 110.37315 * 217.18852 * 17 16 14 32 32 H 1.08996 * 115.54920 * 149.85410 * 21 19 18 33 33 H 1.09007 * 117.50184 * 0.02562 * 22 21 19 34 34 H 1.08999 * 117.50296 * 145.02117 * 22 21 19 35 35 H 1.09002 * 117.49775 * 214.97715 * 23 21 19 36 36 H 1.09002 * 117.49747 * 0.02562 * 23 21 19 37 37 H 1.08994 * 115.55234 * 34.32809 * 24 9 7 38 38 H 1.09009 * 117.49462 * 0.02562 * 25 24 9 39 39 H 1.09001 * 117.50398 * 145.02009 * 25 24 9 40 40 H 1.08995 * 117.49905 * 252.51360 * 26 25 24 41 41 H 1.09005 * 117.51914 * 107.47658 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2509 -2.4992 0.0017 10 1 0.6240 -2.5574 -0.8881 11 8 2.1945 -3.6028 0.0015 12 6 1.8028 -4.7393 -0.5957 13 8 0.7079 -4.8095 -1.1019 14 6 2.7286 -5.9278 -0.6349 15 1 2.9637 -6.2609 0.3760 16 6 4.0223 -5.5811 -1.4053 17 6 4.0242 -6.5641 -2.5970 18 8 3.2106 -7.6748 -2.1606 19 6 2.1020 -7.0792 -1.4522 20 1 1.3676 -6.6884 -2.1566 21 6 1.4516 -8.1023 -0.5189 22 6 2.1069 -9.4810 -0.4157 23 6 0.7800 -9.3178 -1.1614 24 6 0.3719 -2.5793 1.2513 25 6 0.7521 -3.6084 2.3177 26 6 -0.4782 -3.8379 1.4375 27 1 -0.4850 0.8401 -0.0004 28 1 3.9912 -4.5510 -1.7600 29 1 4.8969 -5.7429 -0.7754 30 1 3.5846 -6.0945 -3.4769 31 1 5.0392 -6.8984 -2.8115 32 1 0.9954 -7.6931 0.3824 33 1 3.0017 -9.6589 -1.0124 34 1 2.0816 -9.9791 0.5535 35 1 -0.1178 -9.7084 -0.6823 36 1 0.8019 -9.3886 -2.2489 37 1 -0.0486 -1.6332 1.5918 38 1 1.6289 -4.2281 2.1292 39 1 0.5820 -3.3394 3.3602 40 1 -1.4576 -3.7196 1.9008 41 1 -0.4113 -4.6085 0.6695 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345534432.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:43 Heat of formation + Delta-G solvation = -83.911470 kcal Electronic energy + Delta-G solvation = -22950.342381 eV Core-core repulsion = 19604.055225 eV Total energy + Delta-G solvation = -3346.287157 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.52607 -39.05388 -36.53690 -36.39214 -34.77591 -32.86841 -32.35146 -29.22803 -27.95597 -24.62171 -23.29616 -22.44420 -22.23815 -21.49592 -20.60958 -20.05739 -18.95976 -17.31918 -16.63850 -16.56573 -16.02125 -15.59446 -15.32529 -14.86136 -14.80478 -14.23126 -13.97742 -13.72569 -12.90626 -12.75161 -12.40107 -12.05680 -11.68242 -11.47523 -11.42285 -11.41569 -11.34842 -11.11592 -10.99611 -10.88707 -10.58824 -10.34502 -10.27262 -10.18931 -10.11402 -9.80548 -9.53601 -9.52031 -9.14913 -8.57381 -8.48231 -6.22944 -4.30434 2.85054 3.21441 3.26847 3.29906 3.42269 3.82545 3.86328 4.29315 4.45246 4.61935 4.88242 4.92181 4.93615 4.99391 5.06755 5.09862 5.28765 5.39368 5.54068 5.62707 5.66992 5.69492 5.81569 5.86595 5.92714 5.98615 6.00860 6.05192 6.10485 6.15327 6.24701 6.41957 6.64116 6.76970 6.85544 6.97042 7.14609 7.52081 7.54600 7.79001 8.06624 8.54373 8.81907 9.34354 10.84226 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.024431 B = 0.004926 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.810336 B = 5682.671053 C = 6402.780231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.519 4.519 8 H 0.070 0.930 9 C 0.248 3.752 10 H 0.052 0.948 11 O -0.348 6.348 12 C 0.461 3.539 13 O -0.511 6.511 14 C -0.114 4.114 15 H 0.115 0.885 16 C -0.143 4.143 17 C 0.045 3.955 18 O -0.368 6.368 19 C 0.118 3.882 20 H 0.093 0.907 21 C -0.151 4.151 22 C -0.167 4.167 23 C -0.173 4.173 24 C -0.116 4.116 25 C -0.194 4.194 26 C -0.210 4.210 27 H 0.267 0.733 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.130 0.870 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.454 -13.602 -0.933 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.138 4.138 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.557 4.557 8 H 0.088 0.912 9 C 0.195 3.805 10 H 0.070 0.930 11 O -0.264 6.264 12 C 0.303 3.697 13 O -0.401 6.401 14 C -0.133 4.133 15 H 0.133 0.867 16 C -0.181 4.181 17 C -0.032 4.032 18 O -0.287 6.287 19 C 0.061 3.939 20 H 0.111 0.889 21 C -0.169 4.169 22 C -0.204 4.204 23 C -0.210 4.210 24 C -0.135 4.135 25 C -0.231 4.231 26 C -0.247 4.247 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.133 0.867 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.147 0.853 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.995 -13.659 -1.100 14.585 hybrid contribution 0.108 1.246 0.232 1.272 sum 5.103 -12.413 -0.868 13.449 Atomic orbital electron populations 1.69979 1.05920 1.27373 1.48926 1.24898 0.95039 0.99289 0.94575 0.86310 0.79687 0.82051 0.78338 1.20377 1.20937 1.19546 1.20937 0.93932 0.88327 1.52503 0.91187 1.20164 0.85986 0.80327 0.94004 0.93027 1.86496 1.49170 1.21984 1.68745 1.22961 0.86259 0.85036 0.75424 1.90589 1.22456 1.83343 1.43742 1.22347 0.95216 0.92532 1.03225 0.86692 1.22906 0.96565 1.01488 0.97157 1.23438 0.96140 0.87171 0.96444 1.89080 1.37181 1.29089 1.73373 1.22361 0.88983 0.89979 0.92579 0.88912 1.22270 1.04298 0.89483 1.00895 1.22896 0.97251 0.98334 1.01911 1.22932 0.96378 1.01541 1.00139 1.23018 0.99237 0.93755 0.97443 1.22788 0.98519 1.05937 0.95899 1.23144 0.94491 1.03603 1.03468 0.92360 0.89136 0.89431 0.91979 0.88691 0.86739 0.87729 0.89175 0.88869 0.88670 0.85271 0.89886 0.90397 0.90505 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.59 11.59 55.43 0.64 -23.94 16 2 C 0.06 1.74 5.20 -17.82 -0.09 1.64 16 3 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.52 -14.11 8.90 -34.44 -0.31 -14.41 16 8 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 9 C 0.25 6.40 2.41 -27.88 -0.07 6.33 16 10 H 0.05 1.49 7.16 -51.93 -0.37 1.12 16 11 O -0.35 -7.85 8.36 -39.24 -0.33 -8.18 16 12 C 0.46 9.12 6.02 36.01 0.22 9.34 16 13 O -0.51 -11.34 12.55 -18.75 -0.24 -11.58 16 14 C -0.11 -1.71 3.15 -90.20 -0.28 -1.99 16 15 H 0.12 1.58 7.87 -51.93 -0.41 1.17 16 16 C -0.14 -1.85 6.71 -25.16 -0.17 -2.02 16 17 C 0.04 0.52 7.63 37.93 0.29 0.81 16 18 O -0.37 -4.95 9.79 -35.23 -0.34 -5.29 16 19 C 0.12 1.70 2.97 -25.95 -0.08 1.62 16 20 H 0.09 1.52 6.98 -51.93 -0.36 1.15 16 21 C -0.15 -1.96 5.60 -90.62 -0.51 -2.46 16 22 C -0.17 -1.85 9.90 -26.69 -0.26 -2.11 16 23 C -0.17 -1.97 10.25 -26.69 -0.27 -2.24 16 24 C -0.12 -2.82 5.28 -90.62 -0.48 -3.30 16 25 C -0.19 -4.03 9.79 -26.73 -0.26 -4.29 16 26 C -0.21 -4.52 9.85 -26.73 -0.26 -4.79 16 27 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.09 1.28 7.72 -51.93 -0.40 0.88 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.11 1.51 8.13 -51.93 -0.42 1.09 16 33 H 0.10 1.20 7.07 -51.93 -0.37 0.83 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.13 3.44 6.46 -51.93 -0.34 3.11 16 38 H 0.08 1.67 6.90 -51.92 -0.36 1.31 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 41 H 0.09 2.07 5.37 -51.93 -0.28 1.79 16 LS Contribution 331.70 15.07 5.00 5.00 Total: -1.00 -29.01 331.70 -9.06 -38.07 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.23 Total: 8.24 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -2.54 Total: -17.88 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.64 Total: -23.94 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.91 Total: -25.05 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.01 -9.06 -38.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345534432.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.846 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds