Wall clock time and date at job start Tue Mar 31 2020 01:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99825 * 2 1 4 4 H 1.48503 * 109.47003 * 269.99796 * 3 2 1 5 5 H 1.48492 * 109.47470 * 29.99938 * 3 2 1 6 6 H 1.48502 * 109.46933 * 150.00215 * 3 2 1 7 7 C 1.37872 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99774 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00316 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.46565 * 60.00108 * 9 7 2 11 11 O 1.45201 * 109.47105 * 179.97438 * 9 7 2 12 12 C 1.34225 * 116.99621 * 209.99947 * 11 9 7 13 13 O 1.20821 * 120.00597 * 0.02562 * 12 11 9 14 14 C 1.50705 * 119.99797 * 180.02562 * 12 11 9 15 15 H 1.08996 * 110.45646 * 61.14948 * 14 12 11 16 16 C 1.54517 * 110.51019 * 298.54984 * 14 12 11 17 17 C 1.54479 * 104.06037 * 241.21470 * 16 14 12 18 18 O 1.44433 * 104.80518 * 336.02227 * 17 16 14 19 19 C 1.44422 * 105.27452 * 40.51075 * 18 17 16 20 20 H 1.09001 * 110.37394 * 78.31441 * 19 18 17 21 21 C 1.52999 * 110.46816 * 200.61059 * 19 18 17 22 22 C 1.52996 * 117.49554 * 4.18325 * 21 19 18 23 23 C 1.53002 * 117.49607 * 295.52267 * 21 19 18 24 24 C 1.52993 * 109.46939 * 300.00092 * 9 7 2 25 25 C 1.53001 * 117.50019 * 248.61837 * 24 9 7 26 26 C 1.53000 * 60.00304 * 252.51237 * 25 24 9 27 27 H 0.97004 * 120.00188 * 0.02562 * 1 2 3 28 28 H 1.08991 * 110.51174 * 359.85870 * 16 14 12 29 29 H 1.08995 * 110.51247 * 122.57349 * 16 14 12 30 30 H 1.08997 * 110.37024 * 94.85221 * 17 16 14 31 31 H 1.08995 * 110.37315 * 217.18852 * 17 16 14 32 32 H 1.08996 * 115.54920 * 149.85410 * 21 19 18 33 33 H 1.09007 * 117.50184 * 0.02562 * 22 21 19 34 34 H 1.08999 * 117.50296 * 145.02117 * 22 21 19 35 35 H 1.09002 * 117.49775 * 214.97715 * 23 21 19 36 36 H 1.09002 * 117.49747 * 0.02562 * 23 21 19 37 37 H 1.08994 * 115.55234 * 34.32809 * 24 9 7 38 38 H 1.09009 * 117.49462 * 0.02562 * 25 24 9 39 39 H 1.09001 * 117.50398 * 145.02009 * 25 24 9 40 40 H 1.08995 * 117.49905 * 252.51360 * 26 25 24 41 41 H 1.09005 * 117.51914 * 107.47658 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2509 -2.4992 0.0017 10 1 0.6240 -2.5574 -0.8881 11 8 2.1945 -3.6028 0.0015 12 6 1.8028 -4.7393 -0.5957 13 8 0.7079 -4.8095 -1.1019 14 6 2.7286 -5.9278 -0.6349 15 1 2.9637 -6.2609 0.3760 16 6 4.0223 -5.5811 -1.4053 17 6 4.0242 -6.5641 -2.5970 18 8 3.2106 -7.6748 -2.1606 19 6 2.1020 -7.0792 -1.4522 20 1 1.3676 -6.6884 -2.1566 21 6 1.4516 -8.1023 -0.5189 22 6 2.1069 -9.4810 -0.4157 23 6 0.7800 -9.3178 -1.1614 24 6 0.3719 -2.5793 1.2513 25 6 0.7521 -3.6084 2.3177 26 6 -0.4782 -3.8379 1.4375 27 1 -0.4850 0.8401 -0.0004 28 1 3.9912 -4.5510 -1.7600 29 1 4.8969 -5.7429 -0.7754 30 1 3.5846 -6.0945 -3.4769 31 1 5.0392 -6.8984 -2.8115 32 1 0.9954 -7.6931 0.3824 33 1 3.0017 -9.6589 -1.0124 34 1 2.0816 -9.9791 0.5535 35 1 -0.1178 -9.7084 -0.6823 36 1 0.8019 -9.3886 -2.2489 37 1 -0.0486 -1.6332 1.5918 38 1 1.6289 -4.2281 2.1292 39 1 0.5820 -3.3394 3.3602 40 1 -1.4576 -3.7196 1.9008 41 1 -0.4113 -4.6085 0.6695 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345534432.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:42 Heat of formation + Delta-G solvation = -98.620348 kcal Electronic energy + Delta-G solvation = -22950.980206 eV Core-core repulsion = 19604.055225 eV Total energy + Delta-G solvation = -3346.924981 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.97903 -40.42607 -38.23721 -37.38620 -36.54778 -34.89322 -33.55930 -30.32517 -29.89028 -26.08760 -25.00546 -23.62265 -23.21365 -23.16415 -21.95160 -21.32600 -20.71696 -19.04812 -18.36819 -17.83661 -17.61565 -17.15388 -16.66556 -16.34784 -15.85987 -15.70257 -15.53513 -14.79411 -14.54444 -14.37819 -13.80822 -13.58938 -13.29773 -13.10725 -12.94732 -12.80927 -12.49943 -12.42755 -12.31290 -12.31165 -12.21444 -12.04403 -11.95582 -11.37539 -11.37267 -11.19998 -11.13387 -11.05102 -10.65125 -10.49272 -10.44233 -8.27832 -6.44397 1.25427 1.41394 1.42949 1.54236 1.87323 2.39072 2.77026 2.87401 3.00279 3.13507 3.40046 3.49146 3.78260 3.92625 3.99633 4.05410 4.07397 4.18444 4.24193 4.25166 4.27070 4.34403 4.54181 4.73565 4.75411 4.79862 4.82957 4.86567 4.91620 4.94819 4.99912 5.03634 5.22267 5.22737 5.27379 5.36877 5.50211 5.55160 5.72225 5.88085 6.08720 6.60062 6.93575 7.26275 8.79559 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.024431 B = 0.004926 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.810336 B = 5682.671053 C = 6402.780231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.020 3.980 3 Si 0.978 3.022 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.255 3.745 10 H 0.005 0.995 11 O -0.352 6.352 12 C 0.457 3.543 13 O -0.540 6.540 14 C -0.108 4.108 15 H 0.136 0.864 16 C -0.142 4.142 17 C 0.044 3.956 18 O -0.368 6.368 19 C 0.124 3.876 20 H 0.064 0.936 21 C -0.172 4.172 22 C -0.148 4.148 23 C -0.173 4.173 24 C -0.148 4.148 25 C -0.165 4.165 26 C -0.200 4.200 27 H 0.269 0.731 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.057 0.943 31 H 0.129 0.871 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.166 -14.771 0.076 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.202 3.798 10 H 0.022 0.978 11 O -0.268 6.268 12 C 0.302 3.698 13 O -0.431 6.431 14 C -0.127 4.127 15 H 0.153 0.847 16 C -0.179 4.179 17 C -0.033 4.033 18 O -0.287 6.287 19 C 0.066 3.934 20 H 0.082 0.918 21 C -0.190 4.190 22 C -0.185 4.185 23 C -0.210 4.210 24 C -0.167 4.167 25 C -0.202 4.202 26 C -0.237 4.237 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.133 0.867 30 H 0.075 0.925 31 H 0.147 0.853 32 H 0.128 0.872 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.718 -14.853 -0.096 16.302 hybrid contribution -0.456 1.559 -0.153 1.632 sum 6.261 -13.294 -0.249 14.697 Atomic orbital electron populations 1.70110 1.07455 1.28327 1.49220 1.25778 0.95845 1.02700 0.93714 0.85260 0.78613 0.77479 0.78558 1.19821 1.20265 1.18588 1.21233 0.94007 0.89561 1.53319 0.91374 1.19730 0.85962 0.81256 0.92864 0.97759 1.86480 1.48477 1.22364 1.69524 1.23922 0.86663 0.85154 0.74069 1.90575 1.24104 1.83704 1.44711 1.22486 0.95069 0.90241 1.04900 0.84665 1.22970 0.96290 1.00825 0.97834 1.23610 0.97559 0.86521 0.95564 1.89084 1.36876 1.29494 1.73239 1.22167 0.88774 0.90223 0.92200 0.91797 1.22242 1.05906 0.90039 1.00847 1.22945 0.96715 0.96206 1.02601 1.23015 0.97436 1.00396 1.00119 1.22724 1.01357 0.93935 0.98655 1.22866 0.98081 1.03060 0.96214 1.23124 0.95687 1.01414 1.03492 0.92182 0.90929 0.86670 0.92511 0.85311 0.87176 0.87876 0.87247 0.87564 0.89109 0.87865 0.89115 0.87893 0.88895 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.28 11.59 21.45 0.25 -52.04 16 2 C 0.02 1.08 5.20 84.65 0.44 1.52 16 3 Si 0.98 42.44 29.54 68.60 2.03 44.47 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.54 -30.38 8.90 25.60 0.23 -30.15 16 8 H 0.07 3.72 7.81 -2.91 -0.02 3.69 16 9 C 0.26 13.72 2.41 29.85 0.07 13.79 16 10 H 0.00 0.29 7.16 -2.38 -0.02 0.27 16 11 O -0.35 -16.26 8.36 -51.37 -0.43 -16.68 16 12 C 0.46 18.51 6.02 71.24 0.43 18.94 16 13 O -0.54 -25.06 12.55 21.98 0.28 -24.79 16 14 C -0.11 -3.15 3.15 -10.52 -0.03 -3.19 16 15 H 0.14 3.44 7.87 -2.39 -0.02 3.42 16 16 C -0.14 -3.44 6.71 31.61 0.21 -3.23 16 17 C 0.04 0.93 7.63 72.48 0.55 1.49 16 18 O -0.37 -9.27 9.79 -148.98 -1.46 -10.72 16 19 C 0.12 3.51 2.97 31.10 0.09 3.60 16 20 H 0.06 2.17 6.98 -2.39 -0.02 2.15 16 21 C -0.17 -4.25 5.60 -10.79 -0.06 -4.31 16 22 C -0.15 -2.90 9.90 30.62 0.30 -2.59 16 23 C -0.17 -3.68 10.25 30.62 0.31 -3.37 16 24 C -0.15 -7.37 5.28 -10.79 -0.06 -7.43 16 25 C -0.17 -6.66 9.79 30.59 0.30 -6.36 16 26 C -0.20 -8.63 9.85 30.60 0.30 -8.32 16 27 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 28 H 0.07 2.04 7.72 -2.39 -0.02 2.03 16 29 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.11 2.79 8.13 -2.39 -0.02 2.77 16 33 H 0.10 2.08 7.07 -2.38 -0.02 2.06 16 34 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.11 1.96 8.14 -2.39 -0.02 1.95 16 36 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.10 5.69 6.46 -2.39 -0.02 5.68 16 38 H 0.09 3.50 6.90 -2.38 -0.02 3.49 16 39 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 40 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 41 H 0.09 3.83 5.37 -2.38 -0.01 3.82 16 Total: -1.00 -64.90 331.70 4.78 -60.13 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 1.02 Total: 29.25 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: 3.09 Total: -29.61 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.25 Total: -52.04 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -1.61 Total: -52.20 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -64.90 4.78 -60.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345534432.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.495 kcal (2) G-P(sol) polarization free energy of solvation -64.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds