Wall clock time and date at job start Tue Mar 31 2020 01:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46902 * 2 1 4 4 C 1.52994 * 109.46823 * 240.00310 * 2 1 3 5 5 C 1.50698 * 109.47357 * 59.99984 * 4 2 1 6 6 H 1.07997 * 120.00042 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00090 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00236 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00190 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46621 * 60.00157 * 9 7 5 11 11 H 1.48494 * 109.47076 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47181 * 300.00197 * 9 7 5 13 13 C 1.52997 * 109.47179 * 119.99931 * 2 1 3 14 14 O 1.45193 * 109.47375 * 299.99953 * 13 2 1 15 15 C 1.34228 * 117.00286 * 179.97438 * 14 13 2 16 16 O 1.20827 * 119.99879 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00482 * 180.02562 * 15 14 13 18 18 H 1.09005 * 115.52196 * 274.09269 * 17 15 14 19 19 C 1.53039 * 117.46479 * 128.64284 * 17 15 14 20 20 H 1.08998 * 119.43840 * 140.87441 * 19 17 15 21 21 C 1.54428 * 117.96150 * 345.43492 * 19 17 15 22 22 C 1.54906 * 103.66380 * 319.33805 * 21 19 17 23 23 C 1.52484 * 102.93740 * 322.17400 * 22 21 19 24 24 O 1.20754 * 127.57996 * 218.36752 * 23 22 21 25 25 C 1.51831 * 104.84944 * 38.33362 * 23 22 21 26 26 H 1.08994 * 117.81560 * 195.88525 * 25 23 22 27 27 H 1.09000 * 109.46699 * 299.99744 * 1 2 3 28 28 H 1.08993 * 109.47609 * 59.99688 * 1 2 3 29 29 H 1.08994 * 109.47312 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46583 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46995 * 300.00083 * 3 2 1 32 32 H 1.09000 * 109.47234 * 60.00584 * 3 2 1 33 33 H 1.09002 * 109.47195 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47226 * 299.99358 * 4 2 1 35 35 H 0.96995 * 120.00727 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47125 * 179.97438 * 13 2 1 37 37 H 1.08997 * 109.46812 * 60.00219 * 13 2 1 38 38 H 1.09008 * 110.58296 * 77.87732 * 21 19 17 39 39 H 1.08999 * 110.58713 * 200.78987 * 21 19 17 40 40 H 1.08998 * 110.72285 * 80.53116 * 22 21 19 41 41 H 1.08995 * 110.72059 * 203.63960 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4814 -3.7320 8 7 2.6271 -1.5508 -3.8528 9 14 1.2478 0.3988 -5.2572 10 1 1.7418 1.7992 -5.2570 11 1 1.7439 -0.3005 -6.4697 12 1 -0.2372 0.3977 -5.2573 13 6 2.0400 -0.7212 1.2492 14 8 1.5561 -0.0368 2.4348 15 6 1.9163 -0.5471 3.6228 16 8 2.6134 -1.5329 3.6705 17 6 1.4514 0.1093 4.8971 18 1 2.0734 0.9288 5.2573 19 6 0.7816 -0.7812 5.9462 20 1 0.9924 -0.6158 7.0027 21 6 0.3177 -2.1886 5.5116 22 6 -0.2840 -1.9568 4.1031 23 6 -0.9813 -0.6084 4.2474 24 8 -2.0369 -0.2702 3.7684 25 6 -0.0571 0.2154 5.1263 26 1 -0.4615 1.1183 5.5838 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1299 -0.7216 -1.2491 34 1 1.6767 -1.7489 -1.2493 35 1 2.8614 -1.8822 -4.7337 36 1 3.1300 -0.7216 1.2490 37 1 1.6767 -1.7489 1.2492 38 1 1.1652 -2.8721 5.4585 39 1 -0.4414 -2.5699 6.1946 40 1 0.5033 -1.9053 3.3510 41 1 -1.0007 -2.7400 3.8562 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345924105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:44 Heat of formation + Delta-G solvation = -103.849038 kcal Electronic energy + Delta-G solvation = -22763.796540 eV Core-core repulsion = 19416.644825 eV Total energy + Delta-G solvation = -3347.151714 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.70463 -39.55611 -37.83738 -36.91211 -35.44869 -32.34939 -31.67535 -27.57646 -26.86422 -26.66916 -26.40915 -25.20583 -22.98620 -21.45973 -20.08557 -19.51322 -18.22494 -17.80540 -16.97663 -16.52195 -16.25047 -15.59771 -15.16359 -14.65300 -14.60275 -14.51773 -13.63868 -13.50127 -13.46429 -13.10604 -12.66789 -12.42529 -12.35736 -12.05533 -11.88839 -11.65611 -11.27626 -11.08254 -10.95207 -10.85202 -10.66867 -10.60163 -10.44069 -10.36230 -10.30769 -10.22334 -9.76111 -9.66263 -9.22102 -8.96650 -8.36732 -6.01224 -4.02373 1.52207 2.15748 2.61194 3.19389 3.33289 3.37947 3.40305 3.73201 3.94459 4.07970 4.34446 4.45316 4.61041 4.75371 4.88559 4.98552 5.12389 5.33510 5.34302 5.42406 5.44180 5.46220 5.57741 5.66917 5.71516 5.78856 6.00619 6.16031 6.36275 6.52044 6.56711 6.71011 6.74950 7.10144 7.11660 7.12931 7.25873 7.58910 7.70605 7.79972 7.97103 8.38927 9.01561 9.60803 11.10394 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.029710 B = 0.004113 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.228098 B = 6805.707905 C = 7074.072464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.077 3.923 14 O -0.347 6.347 15 C 0.482 3.518 16 O -0.503 6.503 17 C -0.105 4.105 18 H 0.158 0.842 19 C -0.108 4.108 20 H 0.140 0.860 21 C -0.096 4.096 22 C -0.205 4.205 23 C 0.399 3.601 24 O -0.422 6.422 25 C -0.217 4.217 26 H 0.139 0.861 27 H 0.038 0.962 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.261 0.739 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.111 0.889 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.076 1.883 20.816 21.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.548 4.548 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C 0.004 3.996 14 O -0.263 6.263 15 C 0.326 3.674 16 O -0.392 6.392 17 C -0.124 4.124 18 H 0.176 0.824 19 C -0.126 4.126 20 H 0.158 0.842 21 C -0.133 4.133 22 C -0.242 4.242 23 C 0.272 3.728 24 O -0.292 6.292 25 C -0.236 4.236 26 H 0.157 0.843 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.128 0.872 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.375 1.642 20.378 20.721 hybrid contribution -0.002 0.373 -0.953 1.024 sum -3.377 2.015 19.425 19.819 Atomic orbital electron populations 1.21711 0.94695 1.00923 1.00968 1.20823 0.96178 0.96262 0.92569 1.21717 0.99980 0.95697 1.00932 1.19120 0.96349 0.95271 0.89398 1.21109 1.31267 1.12190 0.90284 0.92125 1.25002 0.95248 0.95072 0.99092 1.69949 1.36933 1.23031 1.23618 0.86677 0.79232 0.79771 0.82462 1.20252 1.21369 1.20232 1.23593 0.99142 0.95865 0.81010 1.86568 1.69058 1.55939 1.14699 1.22390 0.77323 0.82179 0.85540 1.90702 1.35570 1.24996 1.87967 1.21875 0.93991 1.03263 0.93265 0.82438 1.23344 0.99250 0.92616 0.97420 0.84215 1.22006 1.01406 0.95265 0.94619 1.23435 1.02615 0.98260 0.99940 1.24205 0.84440 0.89015 0.75170 1.90435 1.21062 1.77178 1.40501 1.23865 0.92013 1.02962 1.04800 0.84291 0.94263 0.91471 0.93831 0.93734 0.91508 0.94184 0.96331 0.96363 0.92952 0.91296 0.91605 0.88808 0.89256 0.87171 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.08 37.16 0.30 -2.18 16 2 C -0.06 -1.18 0.61 -154.51 -0.09 -1.27 16 3 C -0.13 -2.41 8.08 37.16 0.30 -2.11 16 4 C 0.04 0.89 4.04 -27.89 -0.11 0.78 16 5 C -0.51 -13.79 7.65 -34.44 -0.26 -14.06 16 6 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 9 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.08 1.39 4.28 37.16 0.16 1.55 16 14 O -0.35 -5.55 8.51 -39.25 -0.33 -5.89 16 15 C 0.48 6.72 4.13 36.00 0.15 6.86 16 16 O -0.50 -8.06 15.51 -18.75 -0.29 -8.35 16 17 C -0.11 -1.00 6.21 -91.78 -0.57 -1.57 16 18 H 0.16 1.05 8.14 -51.93 -0.42 0.63 16 19 C -0.11 -0.81 7.06 -89.37 -0.63 -1.44 16 20 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 21 C -0.10 -0.80 6.18 -24.98 -0.15 -0.95 16 22 C -0.21 -2.34 6.13 -25.99 -0.16 -2.50 16 23 C 0.40 5.04 7.50 -27.59 -0.21 4.83 16 24 O -0.42 -6.74 17.99 6.00 0.11 -6.63 16 25 C -0.22 -2.03 6.94 -90.76 -0.63 -2.66 16 26 H 0.14 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.04 0.72 7.68 -51.93 -0.40 0.32 16 28 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.35 6.62 -51.93 -0.34 1.00 16 32 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 36 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 37 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 38 H 0.09 0.83 7.99 -51.92 -0.42 0.41 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.11 1.51 4.41 -51.93 -0.23 1.29 16 41 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 333.04 15.07 5.02 5.02 Total: -1.00 -31.81 333.04 -8.01 -39.82 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -6.21 Total: -1.38 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -2.01 Total: -13.23 kcal Atomic # 7 Polarization: -26.50 SS G_CDS: 0.74 Total: -25.76 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.52 Total: -20.86 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.81 -8.01 -39.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345924105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.034 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds