Wall clock time and date at job start Tue Mar 31 2020 01:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46902 * 2 1 4 4 C 1.52994 * 109.46823 * 240.00310 * 2 1 3 5 5 C 1.50698 * 109.47357 * 59.99984 * 4 2 1 6 6 H 1.07997 * 120.00042 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00090 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00236 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00190 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46621 * 60.00157 * 9 7 5 11 11 H 1.48494 * 109.47076 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47181 * 300.00197 * 9 7 5 13 13 C 1.52997 * 109.47179 * 119.99931 * 2 1 3 14 14 O 1.45193 * 109.47375 * 299.99953 * 13 2 1 15 15 C 1.34228 * 117.00286 * 179.97438 * 14 13 2 16 16 O 1.20827 * 119.99879 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00482 * 180.02562 * 15 14 13 18 18 H 1.09005 * 115.52196 * 274.09269 * 17 15 14 19 19 C 1.53039 * 117.46479 * 128.64284 * 17 15 14 20 20 H 1.08998 * 119.43840 * 140.87441 * 19 17 15 21 21 C 1.54428 * 117.96150 * 345.43492 * 19 17 15 22 22 C 1.54906 * 103.66380 * 319.33805 * 21 19 17 23 23 C 1.52484 * 102.93740 * 322.17400 * 22 21 19 24 24 O 1.20754 * 127.57996 * 218.36752 * 23 22 21 25 25 C 1.51831 * 104.84944 * 38.33362 * 23 22 21 26 26 H 1.08994 * 117.81560 * 195.88525 * 25 23 22 27 27 H 1.09000 * 109.46699 * 299.99744 * 1 2 3 28 28 H 1.08993 * 109.47609 * 59.99688 * 1 2 3 29 29 H 1.08994 * 109.47312 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46583 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46995 * 300.00083 * 3 2 1 32 32 H 1.09000 * 109.47234 * 60.00584 * 3 2 1 33 33 H 1.09002 * 109.47195 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47226 * 299.99358 * 4 2 1 35 35 H 0.96995 * 120.00727 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47125 * 179.97438 * 13 2 1 37 37 H 1.08997 * 109.46812 * 60.00219 * 13 2 1 38 38 H 1.09008 * 110.58296 * 77.87732 * 21 19 17 39 39 H 1.08999 * 110.58713 * 200.78987 * 21 19 17 40 40 H 1.08998 * 110.72285 * 80.53116 * 22 21 19 41 41 H 1.08995 * 110.72059 * 203.63960 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4814 -3.7320 8 7 2.6271 -1.5508 -3.8528 9 14 1.2478 0.3988 -5.2572 10 1 1.7418 1.7992 -5.2570 11 1 1.7439 -0.3005 -6.4697 12 1 -0.2372 0.3977 -5.2573 13 6 2.0400 -0.7212 1.2492 14 8 1.5561 -0.0368 2.4348 15 6 1.9163 -0.5471 3.6228 16 8 2.6134 -1.5329 3.6705 17 6 1.4514 0.1093 4.8971 18 1 2.0734 0.9288 5.2573 19 6 0.7816 -0.7812 5.9462 20 1 0.9924 -0.6158 7.0027 21 6 0.3177 -2.1886 5.5116 22 6 -0.2840 -1.9568 4.1031 23 6 -0.9813 -0.6084 4.2474 24 8 -2.0369 -0.2702 3.7684 25 6 -0.0571 0.2154 5.1263 26 1 -0.4615 1.1183 5.5838 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1299 -0.7216 -1.2491 34 1 1.6767 -1.7489 -1.2493 35 1 2.8614 -1.8822 -4.7337 36 1 3.1300 -0.7216 1.2490 37 1 1.6767 -1.7489 1.2492 38 1 1.1652 -2.8721 5.4585 39 1 -0.4414 -2.5699 6.1946 40 1 0.5033 -1.9053 3.3510 41 1 -1.0007 -2.7400 3.8562 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345924105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:43 Heat of formation + Delta-G solvation = -121.193536 kcal Electronic energy + Delta-G solvation = -22764.548653 eV Core-core repulsion = 19416.644825 eV Total energy + Delta-G solvation = -3347.903828 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.65989 -40.67971 -39.04850 -38.18527 -36.90682 -34.43271 -32.47627 -29.41101 -28.31199 -28.03055 -27.57072 -26.37790 -24.85092 -22.47334 -20.88297 -20.51513 -19.87573 -18.80737 -18.41151 -18.05403 -17.53427 -16.61982 -16.52864 -16.30261 -15.71141 -15.53354 -15.11227 -14.96843 -14.70922 -14.38941 -14.02452 -13.92957 -13.77679 -13.40045 -12.99540 -12.82602 -12.74853 -12.70853 -12.44880 -12.36973 -12.27842 -12.05633 -11.89222 -11.83168 -11.43205 -11.42242 -11.28205 -11.07421 -10.94670 -10.55292 -10.53613 -8.17385 -6.25210 0.58300 1.08401 1.41025 1.43387 1.49903 1.54094 2.42440 2.46924 2.91095 3.17035 3.20947 3.29675 3.55446 3.77257 3.85711 3.87729 3.92511 4.03586 4.16336 4.22309 4.39505 4.52062 4.54797 4.67628 4.69923 4.81943 4.88143 4.93862 4.99616 5.02522 5.06633 5.07275 5.37379 5.39036 5.41232 5.46849 5.49362 5.69470 5.84565 6.25945 6.31549 6.63766 6.87695 7.42355 8.94962 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.029710 B = 0.004113 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.228098 B = 6805.707905 C = 7074.072464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.055 4.055 3 C -0.119 4.119 4 C 0.042 3.958 5 C -0.518 4.518 6 H 0.069 0.931 7 C 0.000 4.000 8 N -0.936 5.936 9 Si 0.958 3.042 10 H -0.266 1.266 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.088 3.912 14 O -0.351 6.351 15 C 0.478 3.522 16 O -0.528 6.528 17 C -0.112 4.112 18 H 0.196 0.804 19 C -0.079 4.079 20 H 0.187 0.813 21 C -0.095 4.095 22 C -0.216 4.216 23 C 0.391 3.609 24 O -0.466 6.466 25 C -0.220 4.220 26 H 0.165 0.835 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.064 0.936 33 H -0.006 1.006 34 H -0.011 1.011 35 H 0.261 0.739 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.085 0.915 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.430 3.558 23.263 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.055 4.055 3 C -0.176 4.176 4 C 0.005 3.995 5 C -0.556 4.556 6 H 0.087 0.913 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.783 3.217 10 H -0.191 1.191 11 H -0.213 1.213 12 H -0.194 1.194 13 C 0.015 3.985 14 O -0.267 6.267 15 C 0.323 3.677 16 O -0.418 6.418 17 C -0.130 4.130 18 H 0.213 0.787 19 C -0.097 4.097 20 H 0.204 0.796 21 C -0.132 4.132 22 C -0.254 4.254 23 C 0.267 3.733 24 O -0.339 6.339 25 C -0.239 4.239 26 H 0.182 0.818 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.012 0.988 34 H 0.008 0.992 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.135 0.865 40 H 0.103 0.897 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.722 3.324 22.852 23.391 hybrid contribution 0.120 -0.242 -1.667 1.689 sum -3.601 3.083 21.185 21.709 Atomic orbital electron populations 1.21600 0.94161 1.00483 1.01087 1.20621 0.96452 0.96799 0.91612 1.21636 0.99932 0.94547 1.01484 1.18964 0.94666 0.94222 0.91680 1.21488 1.30794 1.12262 0.91065 0.91333 1.25897 0.95496 0.95813 1.02532 1.70091 1.38493 1.24748 1.24317 0.85601 0.78884 0.78862 0.78344 1.19093 1.21268 1.19406 1.23131 0.98587 0.95167 0.81661 1.86551 1.69327 1.55890 1.14964 1.23369 0.76534 0.81913 0.85875 1.90691 1.36853 1.26179 1.88127 1.22224 0.94336 1.05121 0.91313 0.78682 1.23687 0.96188 0.90873 0.98929 0.79570 1.22110 1.01873 0.96283 0.92965 1.23506 1.01992 0.98312 1.01542 1.24736 0.84069 0.89906 0.74564 1.90412 1.23083 1.78001 1.42438 1.23843 0.91034 1.04301 1.04722 0.81763 0.92675 0.92573 0.94616 0.93775 0.92698 0.91731 0.98789 0.99229 0.92986 0.91785 0.92597 0.89251 0.86499 0.89707 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.63 8.08 71.98 0.58 -4.05 16 2 C -0.05 -2.26 0.61 -52.18 -0.03 -2.29 16 3 C -0.12 -4.47 8.08 71.98 0.58 -3.89 16 4 C 0.04 2.18 4.04 29.85 0.12 2.30 16 5 C -0.52 -28.54 7.65 25.60 0.20 -28.35 16 6 H 0.07 3.60 5.68 -2.91 -0.02 3.59 16 7 C 0.00 0.00 5.46 84.65 0.46 0.46 16 8 N -0.94 -56.89 13.29 21.45 0.28 -56.60 16 9 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 C 0.09 3.27 4.28 71.98 0.31 3.58 16 14 O -0.35 -11.03 8.51 -51.40 -0.44 -11.47 16 15 C 0.48 12.67 4.13 71.23 0.29 12.97 16 16 O -0.53 -16.65 15.51 21.96 0.34 -16.31 16 17 C -0.11 -1.72 6.21 -11.54 -0.07 -1.79 16 18 H 0.20 1.58 8.14 -2.38 -0.02 1.56 16 19 C -0.08 -0.82 7.06 -9.99 -0.07 -0.89 16 20 H 0.19 0.34 8.14 -2.39 -0.02 0.32 16 21 C -0.10 -1.34 6.18 31.73 0.20 -1.14 16 22 C -0.22 -4.83 6.13 31.07 0.19 -4.64 16 23 C 0.39 9.45 7.50 30.04 0.23 9.68 16 24 O -0.47 -14.89 17.99 -1.43 -0.03 -14.92 16 25 C -0.22 -3.35 6.94 -10.88 -0.08 -3.43 16 26 H 0.16 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.05 2.00 7.68 -2.39 -0.02 1.99 16 28 H 0.06 2.34 6.62 -2.39 -0.02 2.32 16 29 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 2.18 6.62 -2.39 -0.02 2.16 16 32 H 0.06 2.10 7.68 -2.39 -0.02 2.08 16 33 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 35 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 36 H 0.06 2.41 8.13 -2.39 -0.02 2.39 16 37 H 0.06 2.15 8.13 -2.39 -0.02 2.13 16 38 H 0.09 1.39 7.99 -2.38 -0.02 1.37 16 39 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.09 2.38 4.41 -2.39 -0.01 2.37 16 41 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -71.95 333.04 6.12 -65.83 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 1.02 Total: 8.71 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 2.91 Total: -21.50 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.28 Total: -56.60 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -0.12 Total: -42.70 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -71.95 6.12 -65.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345924105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.362 kcal (2) G-P(sol) polarization free energy of solvation -71.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds