Wall clock time and date at job start Tue Mar 31 2020 01:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.62235 * 2 1 4 4 C 1.53233 * 109.62704 * 239.61891 * 2 1 3 5 5 C 1.52955 * 109.40222 * 294.72028 * 4 2 1 6 6 H 1.08998 * 109.41600 * 56.44204 * 5 4 2 7 7 C 1.50711 * 109.40936 * 176.29650 * 5 4 2 8 8 O 1.20820 * 119.99698 * 0.02562 * 7 5 4 9 9 O 1.34227 * 119.99844 * 180.02562 * 7 5 4 10 10 C 1.45194 * 117.00032 * 180.02562 * 9 7 5 11 11 H 1.08998 * 109.47171 * 29.99243 * 10 9 7 12 12 C 1.50699 * 109.47430 * 149.99802 * 10 9 7 13 13 H 1.08000 * 119.99767 * 0.02562 * 12 10 9 14 14 C 1.37876 * 120.00056 * 179.97438 * 12 10 9 15 15 N 1.31506 * 120.00217 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99978 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47240 * 90.00066 * 16 14 12 18 18 H 1.48492 * 109.47103 * 210.00154 * 16 14 12 19 19 H 1.48502 * 109.47255 * 330.00170 * 16 14 12 20 20 C 1.53004 * 109.46966 * 269.99779 * 10 9 7 21 21 C 1.53006 * 117.49884 * 128.74535 * 20 10 9 22 22 C 1.53004 * 117.49900 * 60.08753 * 20 10 9 23 23 C 1.52956 * 109.82240 * 296.40002 * 5 4 2 24 24 C 1.53232 * 109.40174 * 63.59759 * 23 5 4 25 25 C 1.51266 * 109.62514 * 120.37893 * 2 1 3 26 26 O 1.20755 * 120.85337 * 248.53408 * 25 2 1 27 27 H 1.09006 * 109.46994 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47183 * 300.00143 * 1 2 3 29 29 H 1.08997 * 109.46984 * 60.00287 * 1 2 3 30 30 H 1.09001 * 109.48139 * 54.70361 * 4 2 1 31 31 H 1.09003 * 109.47942 * 174.72907 * 4 2 1 32 32 H 0.97003 * 120.00311 * 179.97438 * 15 14 12 33 33 H 1.09003 * 115.54946 * 274.41402 * 20 10 9 34 34 H 1.09000 * 117.49507 * 0.02562 * 21 20 10 35 35 H 1.09000 * 117.49408 * 145.01913 * 21 20 10 36 36 H 1.09000 * 117.49497 * 214.98077 * 22 20 10 37 37 H 1.08997 * 117.49656 * 359.97438 * 22 20 10 38 38 H 1.09000 * 109.48686 * 183.58255 * 23 5 4 39 39 H 1.09000 * 109.47922 * 303.61046 * 23 5 4 40 40 H 1.09005 * 109.62412 * 65.09153 * 24 23 5 41 41 H 1.08998 * 109.62442 * 185.66185 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0447 -0.7299 -1.2451 5 6 1.6471 -2.2050 -1.1700 6 1 0.5656 -2.2836 -1.0595 7 6 2.0734 -2.9037 -2.4356 8 8 2.6373 -2.2848 -3.3066 9 8 1.8266 -4.2134 -2.5949 10 6 2.2657 -4.8204 -3.8386 11 1 3.1497 -4.2988 -4.2052 12 6 2.6009 -6.2700 -3.5992 13 1 2.4941 -6.6929 -2.6112 14 6 3.0429 -7.0566 -4.6417 15 7 3.1715 -6.5421 -5.8451 16 14 3.4577 -8.8537 -4.3451 17 1 2.2452 -9.6837 -4.5603 18 1 4.5222 -9.2783 -5.2894 19 1 3.9355 -9.0277 -2.9499 20 6 1.1471 -4.7205 -4.8777 21 6 1.5042 -4.1369 -6.2463 22 6 0.6626 -3.3209 -5.2618 23 6 2.3286 -2.8655 0.0295 24 6 1.8247 -2.2159 1.3226 25 6 2.0381 -0.7205 1.2292 26 8 2.6034 -0.1188 2.1104 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6076 -0.2804 -2.1367 31 1 3.1307 -0.6478 -1.2917 32 1 3.4828 -7.0955 -6.5785 33 1 0.4061 -5.5194 -4.8490 34 1 2.5361 -3.8246 -6.4064 35 1 0.9978 -4.5517 -7.1178 36 1 -0.3971 -3.1992 -5.4862 37 1 1.1405 -2.4715 -4.7740 38 1 2.0927 -3.9296 0.0413 39 1 3.4078 -2.7332 -0.0473 40 1 0.7619 -2.4240 1.4467 41 1 2.3800 -2.6129 2.1723 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345975587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:29 Heat of formation + Delta-G solvation = -121.433938 kcal Electronic energy + Delta-G solvation = -22736.285735 eV Core-core repulsion = 19388.371482 eV Total energy + Delta-G solvation = -3347.914253 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.59046 -39.46117 -37.07679 -36.00981 -34.92780 -32.76603 -32.62035 -30.03216 -27.90189 -26.35570 -23.66130 -22.92889 -22.61404 -21.28456 -20.31832 -19.20635 -18.52046 -17.37619 -16.51368 -16.32543 -15.54358 -15.51223 -15.20504 -14.72261 -14.64655 -14.01820 -13.91801 -13.78487 -13.18202 -12.97447 -12.66970 -12.54174 -12.20429 -11.95380 -11.75119 -11.47771 -11.38556 -11.16985 -11.08694 -11.02131 -10.92341 -10.60723 -10.42956 -10.29464 -9.85207 -9.63647 -9.43639 -9.36803 -9.05068 -8.67848 -8.44990 -6.17450 -4.25579 1.80196 2.91810 3.23308 3.29336 3.31714 3.53520 3.91667 4.31523 4.41794 4.57678 4.75447 4.85564 4.91445 5.04282 5.08656 5.15053 5.24862 5.27035 5.38670 5.53383 5.62770 5.72135 5.78429 5.82944 5.92382 5.96187 5.96285 6.12908 6.17672 6.21257 6.37281 6.52173 6.66782 6.98068 7.13179 7.24806 7.32960 7.38065 7.60459 7.83557 8.09089 8.60469 8.86687 9.39344 10.89215 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023614 B = 0.004676 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.440948 B = 5986.763976 C = 6811.854821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 H 0.097 0.903 4 C -0.095 4.095 5 C -0.089 4.089 6 H 0.110 0.890 7 C 0.458 3.542 8 O -0.517 6.517 9 O -0.350 6.350 10 C 0.249 3.751 11 H 0.048 0.952 12 C -0.528 4.528 13 H 0.069 0.931 14 C 0.069 3.931 15 N -0.873 5.873 16 Si 0.906 3.094 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.115 4.115 21 C -0.123 4.123 22 C -0.230 4.230 23 C -0.106 4.106 24 C -0.167 4.167 25 C 0.367 3.633 26 O -0.461 6.461 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.264 0.736 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.946 8.949 9.150 14.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 H 0.115 0.885 4 C -0.133 4.133 5 C -0.108 4.108 6 H 0.128 0.872 7 C 0.301 3.699 8 O -0.407 6.407 9 O -0.266 6.266 10 C 0.196 3.804 11 H 0.065 0.935 12 C -0.566 4.566 13 H 0.087 0.913 14 C -0.135 4.135 15 N -0.509 5.509 16 Si 0.733 3.267 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.134 4.134 21 C -0.161 4.161 22 C -0.267 4.267 23 C -0.144 4.144 24 C -0.205 4.205 25 C 0.243 3.757 26 O -0.334 6.334 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.407 9.348 9.128 14.141 hybrid contribution 0.155 -1.062 -0.334 1.124 sum -5.252 8.286 8.794 13.175 Atomic orbital electron populations 1.21815 0.92498 1.03082 1.02847 1.21959 0.98148 1.00991 0.94676 0.88459 1.21473 1.02437 0.92547 0.96806 1.21102 1.03037 0.94704 0.91931 0.87240 1.23154 0.76198 0.82673 0.87890 1.90577 1.39568 1.66893 1.43706 1.86470 1.73269 1.21947 1.44873 1.20208 0.91658 0.92737 0.75786 0.93450 1.20897 1.46246 0.92965 0.96477 0.91321 1.24871 0.94903 0.98945 0.94766 1.70041 1.44579 1.36135 1.00097 0.86376 0.78150 0.83948 0.78248 1.20457 1.21056 1.19683 1.22606 1.00485 0.92696 0.97585 1.22360 0.99315 1.01764 0.92631 1.23284 0.98555 0.97039 1.07791 1.21498 1.00822 1.01417 0.90654 1.22327 1.04280 0.93733 1.00121 1.24986 0.73699 0.91474 0.85571 1.90392 1.32356 1.70747 1.39884 0.91411 0.92237 0.91022 0.89501 0.90509 0.92623 0.89368 0.89354 0.90813 0.91075 0.88827 0.88563 0.90808 0.87971 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.89 37.16 0.33 -0.81 16 2 C -0.14 -1.36 3.16 -91.37 -0.29 -1.65 16 3 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.10 -1.11 4.01 -26.63 -0.11 -1.22 16 5 C -0.09 -1.15 2.37 -91.81 -0.22 -1.37 16 6 H 0.11 1.20 6.41 -51.93 -0.33 0.87 16 7 C 0.46 8.61 6.48 36.01 0.23 8.85 16 8 O -0.52 -11.07 12.98 -18.75 -0.24 -11.31 16 9 O -0.35 -7.67 9.66 -39.25 -0.38 -8.05 16 10 C 0.25 6.29 2.25 -27.88 -0.06 6.23 16 11 H 0.05 1.34 6.91 -51.93 -0.36 0.99 16 12 C -0.53 -14.19 8.88 -34.44 -0.31 -14.50 16 13 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 14 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 15 N -0.87 -23.74 11.43 55.43 0.63 -23.11 16 16 Si 0.91 20.50 29.54 -169.99 -5.02 15.48 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 C -0.11 -2.73 4.47 -90.61 -0.41 -3.13 16 21 C -0.12 -2.79 9.04 -26.69 -0.24 -3.03 16 22 C -0.23 -4.78 9.80 -26.69 -0.26 -5.04 16 23 C -0.11 -1.25 5.17 -26.63 -0.14 -1.39 16 24 C -0.17 -1.61 5.90 -27.45 -0.16 -1.77 16 25 C 0.37 4.16 6.08 -28.44 -0.17 3.98 16 26 O -0.46 -6.71 17.89 6.00 0.11 -6.60 16 27 H 0.07 0.49 6.00 -51.93 -0.31 0.18 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.09 1.03 8.00 -51.93 -0.42 0.62 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.09 2.16 8.11 -51.93 -0.42 1.74 16 34 H 0.09 2.14 8.05 -51.93 -0.42 1.72 16 35 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.09 1.99 5.37 -51.93 -0.28 1.71 16 38 H 0.10 1.17 8.02 -51.93 -0.42 0.75 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.10 0.77 7.82 -51.93 -0.41 0.36 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 330.58 15.07 4.98 4.98 Total: -1.00 -30.12 330.58 -8.10 -38.22 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.29 Total: 3.48 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -1.89 Total: -13.09 kcal Atomic # 7 Polarization: -23.74 SS G_CDS: 0.63 Total: -23.11 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.52 Total: -25.96 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.12 -8.10 -38.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345975587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.213 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds