Wall clock time and date at job start Tue Mar 31 2020 01:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.62235 * 2 1 4 4 C 1.53233 * 109.62704 * 239.61891 * 2 1 3 5 5 C 1.52955 * 109.40222 * 294.72028 * 4 2 1 6 6 H 1.08998 * 109.41600 * 56.44204 * 5 4 2 7 7 C 1.50711 * 109.40936 * 176.29650 * 5 4 2 8 8 O 1.20820 * 119.99698 * 0.02562 * 7 5 4 9 9 O 1.34227 * 119.99844 * 180.02562 * 7 5 4 10 10 C 1.45194 * 117.00032 * 180.02562 * 9 7 5 11 11 H 1.08998 * 109.47171 * 29.99243 * 10 9 7 12 12 C 1.50699 * 109.47430 * 149.99802 * 10 9 7 13 13 H 1.08000 * 119.99767 * 0.02562 * 12 10 9 14 14 C 1.37876 * 120.00056 * 179.97438 * 12 10 9 15 15 N 1.31506 * 120.00217 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99978 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47240 * 90.00066 * 16 14 12 18 18 H 1.48492 * 109.47103 * 210.00154 * 16 14 12 19 19 H 1.48502 * 109.47255 * 330.00170 * 16 14 12 20 20 C 1.53004 * 109.46966 * 269.99779 * 10 9 7 21 21 C 1.53006 * 117.49884 * 128.74535 * 20 10 9 22 22 C 1.53004 * 117.49900 * 60.08753 * 20 10 9 23 23 C 1.52956 * 109.82240 * 296.40002 * 5 4 2 24 24 C 1.53232 * 109.40174 * 63.59759 * 23 5 4 25 25 C 1.51266 * 109.62514 * 120.37893 * 2 1 3 26 26 O 1.20755 * 120.85337 * 248.53408 * 25 2 1 27 27 H 1.09006 * 109.46994 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47183 * 300.00143 * 1 2 3 29 29 H 1.08997 * 109.46984 * 60.00287 * 1 2 3 30 30 H 1.09001 * 109.48139 * 54.70361 * 4 2 1 31 31 H 1.09003 * 109.47942 * 174.72907 * 4 2 1 32 32 H 0.97003 * 120.00311 * 179.97438 * 15 14 12 33 33 H 1.09003 * 115.54946 * 274.41402 * 20 10 9 34 34 H 1.09000 * 117.49507 * 0.02562 * 21 20 10 35 35 H 1.09000 * 117.49408 * 145.01913 * 21 20 10 36 36 H 1.09000 * 117.49497 * 214.98077 * 22 20 10 37 37 H 1.08997 * 117.49656 * 359.97438 * 22 20 10 38 38 H 1.09000 * 109.48686 * 183.58255 * 23 5 4 39 39 H 1.09000 * 109.47922 * 303.61046 * 23 5 4 40 40 H 1.09005 * 109.62412 * 65.09153 * 24 23 5 41 41 H 1.08998 * 109.62442 * 185.66185 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0447 -0.7299 -1.2451 5 6 1.6471 -2.2050 -1.1700 6 1 0.5656 -2.2836 -1.0595 7 6 2.0734 -2.9037 -2.4356 8 8 2.6373 -2.2848 -3.3066 9 8 1.8266 -4.2134 -2.5949 10 6 2.2657 -4.8204 -3.8386 11 1 3.1497 -4.2988 -4.2052 12 6 2.6009 -6.2700 -3.5992 13 1 2.4941 -6.6929 -2.6112 14 6 3.0429 -7.0566 -4.6417 15 7 3.1715 -6.5421 -5.8451 16 14 3.4577 -8.8537 -4.3451 17 1 2.2452 -9.6837 -4.5603 18 1 4.5222 -9.2783 -5.2894 19 1 3.9355 -9.0277 -2.9499 20 6 1.1471 -4.7205 -4.8777 21 6 1.5042 -4.1369 -6.2463 22 6 0.6626 -3.3209 -5.2618 23 6 2.3286 -2.8655 0.0295 24 6 1.8247 -2.2159 1.3226 25 6 2.0381 -0.7205 1.2292 26 8 2.6034 -0.1188 2.1104 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6076 -0.2804 -2.1367 31 1 3.1307 -0.6478 -1.2917 32 1 3.4828 -7.0955 -6.5785 33 1 0.4061 -5.5194 -4.8490 34 1 2.5361 -3.8246 -6.4064 35 1 0.9978 -4.5517 -7.1178 36 1 -0.3971 -3.1992 -5.4862 37 1 1.1405 -2.4715 -4.7740 38 1 2.0927 -3.9296 0.0413 39 1 3.4078 -2.7332 -0.0473 40 1 0.7619 -2.4240 1.4467 41 1 2.3800 -2.6129 2.1723 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345975587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:29 Heat of formation + Delta-G solvation = -136.926470 kcal Electronic energy + Delta-G solvation = -22736.957542 eV Core-core repulsion = 19388.371482 eV Total energy + Delta-G solvation = -3348.586060 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.82192 -40.78614 -38.52639 -37.39010 -36.65338 -34.68864 -33.56539 -31.09735 -29.75900 -27.23088 -25.41518 -24.10043 -23.70796 -23.05315 -21.78645 -20.96813 -19.44707 -19.02746 -18.27737 -17.63211 -17.08467 -16.63221 -16.43511 -16.41624 -15.69436 -15.63151 -15.13252 -14.83963 -14.59818 -14.33438 -13.82792 -13.65092 -13.40290 -13.21124 -13.08455 -12.95453 -12.79761 -12.74013 -12.52527 -12.24920 -12.16249 -12.08226 -11.95278 -11.75259 -11.48407 -11.34750 -11.08486 -10.89950 -10.57166 -10.40194 -10.34142 -8.19668 -6.36086 0.90045 1.40128 1.44493 1.44743 1.55270 2.02750 2.44534 3.06298 3.08207 3.24508 3.48426 3.63615 3.81383 3.89938 4.10757 4.13195 4.19346 4.26403 4.32210 4.34417 4.46469 4.49305 4.59325 4.79552 4.82212 4.83618 4.90026 4.93701 5.03621 5.09209 5.13234 5.14266 5.24468 5.29245 5.41486 5.42473 5.52135 5.60354 5.89879 6.20277 6.44593 6.67920 7.06267 7.34290 8.86371 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023614 B = 0.004676 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.440948 B = 5986.763976 C = 6811.854821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 H 0.099 0.901 4 C -0.090 4.090 5 C -0.078 4.078 6 H 0.142 0.858 7 C 0.451 3.549 8 O -0.547 6.547 9 O -0.356 6.356 10 C 0.254 3.746 11 H 0.005 0.995 12 C -0.553 4.553 13 H 0.065 0.935 14 C 0.026 3.974 15 N -0.896 5.896 16 Si 0.971 3.029 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.268 1.268 20 C -0.132 4.132 21 C -0.127 4.127 22 C -0.197 4.197 23 C -0.103 4.103 24 C -0.158 4.158 25 C 0.369 3.631 26 O -0.496 6.496 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.266 0.734 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.134 0.866 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.797 8.865 10.191 15.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 H 0.118 0.882 4 C -0.128 4.128 5 C -0.096 4.096 6 H 0.159 0.841 7 C 0.296 3.704 8 O -0.438 6.438 9 O -0.272 6.272 10 C 0.201 3.799 11 H 0.023 0.977 12 C -0.591 4.591 13 H 0.084 0.916 14 C -0.176 4.176 15 N -0.532 5.532 16 Si 0.795 3.205 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.192 1.192 20 C -0.151 4.151 21 C -0.164 4.164 22 C -0.233 4.233 23 C -0.141 4.141 24 C -0.195 4.195 25 C 0.247 3.753 26 O -0.372 6.372 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.077 0.923 40 H 0.152 0.848 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.270 9.277 10.177 15.572 hybrid contribution 0.777 -0.973 -0.668 1.413 sum -6.493 8.303 9.509 14.195 Atomic orbital electron populations 1.21862 0.90324 1.04142 1.03856 1.21910 0.99824 1.00522 0.92656 0.88235 1.21423 1.01464 0.91887 0.97996 1.21258 1.04851 0.94537 0.88979 0.84077 1.24333 0.75155 0.81478 0.89399 1.90564 1.40833 1.67086 1.45365 1.86460 1.73482 1.23891 1.43395 1.19800 0.90859 0.91863 0.77399 0.97733 1.21190 1.47190 0.94067 0.96621 0.91645 1.25678 0.94458 1.03029 0.94450 1.70158 1.44751 1.37541 1.00732 0.85366 0.78092 0.78818 0.78215 1.19543 1.20748 1.19199 1.22416 1.00380 0.94405 0.97857 1.22272 0.98569 1.02638 0.92935 1.23282 0.99955 0.94954 1.05151 1.21459 0.99991 1.01450 0.91221 1.22310 1.06299 0.92145 0.98743 1.25356 0.72369 0.92234 0.85298 1.90393 1.33939 1.71568 1.41314 0.90300 0.91241 0.90126 0.89468 0.92315 0.92522 0.90210 0.91915 0.89484 0.87727 0.89360 0.88745 0.92274 0.84772 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.89 71.98 0.64 -1.12 16 2 C -0.13 -2.27 3.16 -11.28 -0.04 -2.31 16 3 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 4 C -0.09 -2.00 4.01 30.66 0.12 -1.88 16 5 C -0.08 -1.90 2.37 -11.57 -0.03 -1.92 16 6 H 0.14 2.61 6.41 -2.39 -0.02 2.59 16 7 C 0.45 17.00 6.48 71.24 0.46 17.46 16 8 O -0.55 -23.97 12.98 21.98 0.29 -23.68 16 9 O -0.36 -15.80 9.66 -51.39 -0.50 -16.29 16 10 C 0.25 13.23 2.25 29.85 0.07 13.30 16 11 H 0.00 0.29 6.91 -2.39 -0.02 0.28 16 12 C -0.55 -30.33 8.88 25.60 0.23 -30.10 16 13 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 14 C 0.03 1.38 5.30 84.66 0.45 1.83 16 15 N -0.90 -49.60 11.43 21.45 0.25 -49.35 16 16 Si 0.97 42.05 29.54 68.60 2.03 44.08 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 20 C -0.13 -6.31 4.47 -10.79 -0.05 -6.36 16 21 C -0.13 -5.77 9.04 30.62 0.28 -5.50 16 22 C -0.20 -7.96 9.80 30.62 0.30 -7.66 16 23 C -0.10 -2.29 5.17 30.66 0.16 -2.13 16 24 C -0.16 -2.62 5.90 30.13 0.18 -2.44 16 25 C 0.37 7.66 6.08 29.48 0.18 7.84 16 26 O -0.50 -13.90 17.89 -1.44 -0.03 -13.93 16 27 H 0.08 0.79 6.00 -2.38 -0.01 0.78 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 1.96 8.00 -2.39 -0.02 1.94 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 33 H 0.08 3.93 8.11 -2.39 -0.02 3.91 16 34 H 0.06 3.16 8.05 -2.39 -0.02 3.14 16 35 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 36 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 37 H 0.09 3.70 5.37 -2.39 -0.01 3.69 16 38 H 0.09 2.17 8.02 -2.39 -0.02 2.15 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.13 1.43 7.82 -2.38 -0.02 1.42 16 41 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -67.04 330.58 6.00 -61.04 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 1.02 Total: 19.12 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 2.95 Total: -20.98 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 0.25 Total: -49.35 kcal Atomic # 8 Polarization: -53.66 SS G_CDS: -0.24 Total: -53.90 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -67.04 6.00 -61.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345975587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.888 kcal (2) G-P(sol) polarization free energy of solvation -67.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds