Wall clock time and date at job start Tue Mar 31 2020 01:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.62455 * 2 1 4 4 C 1.53230 * 109.62548 * 239.42211 * 2 1 3 5 5 C 1.52958 * 109.40140 * 185.66024 * 4 2 1 6 6 H 1.09002 * 109.41261 * 303.48828 * 5 4 2 7 7 C 1.50705 * 109.41119 * 183.70762 * 5 4 2 8 8 O 1.20821 * 119.99776 * 359.64324 * 7 5 4 9 9 O 1.34226 * 119.99749 * 179.64459 * 7 5 4 10 10 C 1.45208 * 116.99697 * 179.97438 * 9 7 5 11 11 H 1.08993 * 109.47266 * 330.00431 * 10 9 7 12 12 C 1.50696 * 109.47010 * 209.99923 * 10 9 7 13 13 H 1.07994 * 120.00408 * 0.02562 * 12 10 9 14 14 C 1.37878 * 119.99729 * 179.97438 * 12 10 9 15 15 N 1.31517 * 120.00174 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00008 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47202 * 90.00334 * 16 14 12 18 18 H 1.48498 * 109.47359 * 210.00495 * 16 14 12 19 19 H 1.48505 * 109.47240 * 330.00272 * 16 14 12 20 20 C 1.52999 * 109.46682 * 90.00274 * 10 9 7 21 21 C 1.52999 * 117.50166 * 8.74860 * 20 10 9 22 22 C 1.53000 * 117.50064 * 300.08744 * 20 10 9 23 23 C 1.52955 * 109.82348 * 63.59950 * 5 4 2 24 24 C 1.53236 * 109.40158 * 296.40231 * 23 5 4 25 25 C 1.51268 * 108.53690 * 54.62535 * 24 23 5 26 26 O 1.20761 * 120.85224 * 128.63006 * 25 24 23 27 27 H 1.08998 * 109.47116 * 299.61651 * 1 2 3 28 28 H 1.08992 * 109.47235 * 59.62237 * 1 2 3 29 29 H 1.09000 * 109.47119 * 179.62769 * 1 2 3 30 30 H 1.09002 * 109.47900 * 305.63532 * 4 2 1 31 31 H 1.08993 * 109.48369 * 65.66677 * 4 2 1 32 32 H 0.96997 * 120.00008 * 179.97438 * 15 14 12 33 33 H 1.09002 * 115.54759 * 154.41775 * 20 10 9 34 34 H 1.09007 * 117.49769 * 359.97438 * 21 20 10 35 35 H 1.08994 * 117.49984 * 145.02200 * 21 20 10 36 36 H 1.09000 * 117.50118 * 214.98153 * 22 20 10 37 37 H 1.09005 * 117.49734 * 359.97438 * 22 20 10 38 38 H 1.08988 * 109.48772 * 176.42282 * 23 5 4 39 39 H 1.09004 * 109.47866 * 56.37455 * 23 5 4 40 40 H 1.08999 * 109.62439 * 174.33799 * 24 23 5 41 41 H 1.09001 * 109.62623 * 294.90958 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0447 -0.7342 -1.2426 5 6 3.5676 -0.8549 -1.1671 6 1 4.0049 0.1380 -1.0612 7 6 4.0825 -1.4952 -2.4304 8 8 3.3097 -1.8270 -3.2979 9 8 5.3997 -1.6971 -2.5918 10 6 5.8240 -2.3192 -3.8333 11 1 5.0381 -2.9824 -4.1945 12 6 7.0813 -3.1144 -3.5927 13 1 7.5176 -3.1491 -2.6054 14 6 7.6739 -3.7984 -4.6328 15 7 7.1423 -3.7565 -5.8350 16 14 9.2320 -4.7847 -4.3344 17 1 8.8729 -6.1743 -3.9533 18 1 10.0490 -4.8069 -5.5743 19 1 10.0130 -4.1570 -3.2383 20 6 6.0978 -1.2362 -4.8788 21 6 6.0900 0.2192 -4.4071 22 6 4.9380 -0.3148 -5.2620 23 6 3.9608 -1.7145 0.0354 24 6 3.5182 -1.0171 1.3261 25 6 2.0381 -0.7205 1.2293 26 8 1.2813 -1.0509 2.1105 27 1 -0.3633 0.5079 0.8934 28 1 -0.3633 0.5196 -0.8865 29 1 -0.3633 -1.0276 -0.0067 30 1 1.6028 -1.7297 -1.2856 31 1 1.7680 -0.1747 -2.1361 32 1 7.5595 -4.2375 -6.5668 33 1 6.8052 -1.5075 -5.6625 34 1 5.8893 0.4053 -3.3519 35 1 6.7918 0.9056 -4.8807 36 1 4.8825 0.0204 -6.2977 37 1 3.9797 -0.4805 -4.7695 38 1 5.0423 -1.8495 0.0477 39 1 3.4736 -2.6868 -0.0379 40 1 3.7056 -1.6707 2.1781 41 1 4.0711 -0.0856 1.4471 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345975597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:32 Heat of formation + Delta-G solvation = -121.536204 kcal Electronic energy + Delta-G solvation = -22706.514583 eV Core-core repulsion = 19358.595896 eV Total energy + Delta-G solvation = -3347.918688 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57467 -39.58071 -37.05848 -35.89835 -34.78201 -33.11065 -32.82737 -29.94039 -27.93163 -26.33317 -23.77049 -22.80473 -22.41468 -21.49864 -20.21366 -19.23313 -18.93653 -17.07835 -16.63427 -16.22622 -15.96587 -15.56927 -15.28508 -14.85400 -14.67528 -14.20741 -13.94459 -13.36332 -13.13297 -12.85011 -12.47867 -12.44150 -12.21541 -11.90730 -11.78036 -11.54803 -11.32975 -11.24634 -11.10262 -11.01763 -10.97533 -10.82628 -10.57674 -10.33796 -10.11993 -9.65124 -9.53085 -9.44494 -9.15120 -8.57285 -8.47931 -6.22611 -4.29982 1.81426 2.87422 3.21931 3.27817 3.30709 3.50848 3.88647 4.28810 4.44037 4.58828 4.73654 4.85059 4.91705 4.99973 5.09327 5.10169 5.23831 5.27683 5.36196 5.60958 5.67989 5.70031 5.79061 5.81033 5.86457 5.93597 6.02111 6.04801 6.09622 6.15911 6.17972 6.41063 6.63844 6.85497 6.96279 7.15051 7.35335 7.52817 7.55487 7.80277 8.07332 8.56032 8.82812 9.34852 10.84545 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.024175 B = 0.004561 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.934846 B = 6138.167818 C = 6830.753421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.140 4.140 3 H 0.106 0.894 4 C -0.093 4.093 5 C -0.088 4.088 6 H 0.108 0.892 7 C 0.456 3.544 8 O -0.514 6.514 9 O -0.349 6.349 10 C 0.248 3.752 11 H 0.052 0.948 12 C -0.519 4.519 13 H 0.070 0.930 14 C 0.065 3.935 15 N -0.885 5.885 16 Si 0.909 3.091 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.271 1.271 20 C -0.116 4.116 21 C -0.194 4.194 22 C -0.211 4.211 23 C -0.106 4.106 24 C -0.167 4.167 25 C 0.364 3.636 26 O -0.457 6.457 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.266 0.734 33 H 0.129 0.871 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.878 8.328 9.727 14.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 H 0.124 0.876 4 C -0.131 4.131 5 C -0.107 4.107 6 H 0.126 0.874 7 C 0.298 3.702 8 O -0.403 6.403 9 O -0.265 6.265 10 C 0.195 3.805 11 H 0.070 0.930 12 C -0.556 4.556 13 H 0.088 0.912 14 C -0.138 4.138 15 N -0.522 5.522 16 Si 0.736 3.264 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.195 1.195 20 C -0.135 4.135 21 C -0.231 4.231 22 C -0.248 4.248 23 C -0.144 4.144 24 C -0.205 4.205 25 C 0.239 3.761 26 O -0.330 6.330 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.147 0.853 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.437 7.953 9.711 14.590 hybrid contribution 0.911 -0.418 -0.323 1.053 sum -6.526 7.536 9.388 13.693 Atomic orbital electron populations 1.21642 0.92977 1.02834 1.02163 1.21905 0.98016 1.01206 0.94797 0.87592 1.21473 0.92704 1.02117 0.96797 1.21081 0.96590 1.01093 0.91961 0.87444 1.23182 0.82676 0.76440 0.87871 1.90591 1.57973 1.48059 1.43718 1.86484 1.22844 1.72163 1.45052 1.20143 0.95745 0.88928 0.75650 0.93042 1.20937 1.08904 1.29125 0.96678 0.91171 1.24900 0.97932 0.96284 0.94703 1.69978 1.39894 1.41878 1.00477 0.86319 0.82122 0.80129 0.77862 1.20391 1.20967 1.19548 1.23026 0.99418 0.89356 1.01677 1.22797 1.01914 0.99308 0.99098 1.23154 0.94849 1.07484 0.99276 1.21499 1.03786 0.98454 0.90662 1.22330 0.94668 1.03388 1.00069 1.24986 0.90995 0.74439 0.85698 1.90380 1.60189 1.42636 1.39778 0.92032 0.91759 0.92155 0.90453 0.89567 0.92379 0.85307 0.89812 0.90441 0.90552 0.88823 0.88597 0.90804 0.88868 0.87988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.60 37.16 0.32 -1.01 16 2 C -0.14 -1.36 3.01 -91.37 -0.27 -1.63 16 3 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 4 C -0.09 -1.09 3.83 -26.63 -0.10 -1.19 16 5 C -0.09 -1.13 2.52 -91.81 -0.23 -1.36 16 6 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 7 C 0.46 8.51 6.20 36.01 0.22 8.74 16 8 O -0.51 -11.01 12.99 -18.75 -0.24 -11.25 16 9 O -0.35 -7.56 8.21 -39.25 -0.32 -7.88 16 10 C 0.25 6.28 2.41 -27.89 -0.07 6.21 16 11 H 0.05 1.47 7.16 -51.93 -0.37 1.10 16 12 C -0.52 -13.90 8.90 -34.44 -0.31 -14.21 16 13 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 14 C 0.06 1.72 5.20 -17.82 -0.09 1.62 16 15 N -0.89 -24.42 11.59 55.43 0.64 -23.77 16 16 Si 0.91 20.45 29.54 -169.99 -5.02 15.43 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 C -0.12 -2.78 5.27 -90.62 -0.48 -3.26 16 21 C -0.19 -3.90 9.80 -26.69 -0.26 -4.16 16 22 C -0.21 -4.43 9.85 -26.69 -0.26 -4.69 16 23 C -0.11 -1.23 5.17 -26.63 -0.14 -1.37 16 24 C -0.17 -1.57 6.17 -27.48 -0.17 -1.74 16 25 C 0.36 4.02 6.58 -28.47 -0.19 3.83 16 26 O -0.46 -6.43 16.86 6.00 0.10 -6.33 16 27 H 0.06 0.58 8.04 -51.93 -0.42 0.16 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.03 8.00 -51.93 -0.42 0.61 16 32 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.13 3.39 6.46 -51.93 -0.34 3.05 16 34 H 0.08 1.61 6.91 -51.93 -0.36 1.25 16 35 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.09 2.01 5.37 -51.93 -0.28 1.73 16 38 H 0.10 1.16 8.02 -51.94 -0.42 0.74 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 331.51 15.07 5.00 5.00 Total: -1.00 -30.09 331.51 -8.24 -38.34 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.37 Total: 4.69 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -2.03 Total: -14.21 kcal Atomic # 7 Polarization: -24.42 SS G_CDS: 0.64 Total: -23.77 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.46 Total: -25.46 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.09 -8.24 -38.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345975597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.199 kcal (2) G-P(sol) polarization free energy of solvation -30.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds