Wall clock time and date at job start Tue Mar 31 2020 01:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.62455 * 2 1 4 4 C 1.53230 * 109.62548 * 239.42211 * 2 1 3 5 5 C 1.52958 * 109.40140 * 185.66024 * 4 2 1 6 6 H 1.09002 * 109.41261 * 303.48828 * 5 4 2 7 7 C 1.50705 * 109.41119 * 183.70762 * 5 4 2 8 8 O 1.20821 * 119.99776 * 359.64324 * 7 5 4 9 9 O 1.34226 * 119.99749 * 179.64459 * 7 5 4 10 10 C 1.45208 * 116.99697 * 179.97438 * 9 7 5 11 11 H 1.08993 * 109.47266 * 330.00431 * 10 9 7 12 12 C 1.50696 * 109.47010 * 209.99923 * 10 9 7 13 13 H 1.07994 * 120.00408 * 0.02562 * 12 10 9 14 14 C 1.37878 * 119.99729 * 179.97438 * 12 10 9 15 15 N 1.31517 * 120.00174 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00008 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47202 * 90.00334 * 16 14 12 18 18 H 1.48498 * 109.47359 * 210.00495 * 16 14 12 19 19 H 1.48505 * 109.47240 * 330.00272 * 16 14 12 20 20 C 1.52999 * 109.46682 * 90.00274 * 10 9 7 21 21 C 1.52999 * 117.50166 * 8.74860 * 20 10 9 22 22 C 1.53000 * 117.50064 * 300.08744 * 20 10 9 23 23 C 1.52955 * 109.82348 * 63.59950 * 5 4 2 24 24 C 1.53236 * 109.40158 * 296.40231 * 23 5 4 25 25 C 1.51268 * 108.53690 * 54.62535 * 24 23 5 26 26 O 1.20761 * 120.85224 * 128.63006 * 25 24 23 27 27 H 1.08998 * 109.47116 * 299.61651 * 1 2 3 28 28 H 1.08992 * 109.47235 * 59.62237 * 1 2 3 29 29 H 1.09000 * 109.47119 * 179.62769 * 1 2 3 30 30 H 1.09002 * 109.47900 * 305.63532 * 4 2 1 31 31 H 1.08993 * 109.48369 * 65.66677 * 4 2 1 32 32 H 0.96997 * 120.00008 * 179.97438 * 15 14 12 33 33 H 1.09002 * 115.54759 * 154.41775 * 20 10 9 34 34 H 1.09007 * 117.49769 * 359.97438 * 21 20 10 35 35 H 1.08994 * 117.49984 * 145.02200 * 21 20 10 36 36 H 1.09000 * 117.50118 * 214.98153 * 22 20 10 37 37 H 1.09005 * 117.49734 * 359.97438 * 22 20 10 38 38 H 1.08988 * 109.48772 * 176.42282 * 23 5 4 39 39 H 1.09004 * 109.47866 * 56.37455 * 23 5 4 40 40 H 1.08999 * 109.62439 * 174.33799 * 24 23 5 41 41 H 1.09001 * 109.62623 * 294.90958 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0447 -0.7342 -1.2426 5 6 3.5676 -0.8549 -1.1671 6 1 4.0049 0.1380 -1.0612 7 6 4.0825 -1.4952 -2.4304 8 8 3.3097 -1.8270 -3.2979 9 8 5.3997 -1.6971 -2.5918 10 6 5.8240 -2.3192 -3.8333 11 1 5.0381 -2.9824 -4.1945 12 6 7.0813 -3.1144 -3.5927 13 1 7.5176 -3.1491 -2.6054 14 6 7.6739 -3.7984 -4.6328 15 7 7.1423 -3.7565 -5.8350 16 14 9.2320 -4.7847 -4.3344 17 1 8.8729 -6.1743 -3.9533 18 1 10.0490 -4.8069 -5.5743 19 1 10.0130 -4.1570 -3.2383 20 6 6.0978 -1.2362 -4.8788 21 6 6.0900 0.2192 -4.4071 22 6 4.9380 -0.3148 -5.2620 23 6 3.9608 -1.7145 0.0354 24 6 3.5182 -1.0171 1.3261 25 6 2.0381 -0.7205 1.2293 26 8 1.2813 -1.0509 2.1105 27 1 -0.3633 0.5079 0.8934 28 1 -0.3633 0.5196 -0.8865 29 1 -0.3633 -1.0276 -0.0067 30 1 1.6028 -1.7297 -1.2856 31 1 1.7680 -0.1747 -2.1361 32 1 7.5595 -4.2375 -6.5668 33 1 6.8052 -1.5075 -5.6625 34 1 5.8893 0.4053 -3.3519 35 1 6.7918 0.9056 -4.8807 36 1 4.8825 0.0204 -6.2977 37 1 3.9797 -0.4805 -4.7695 38 1 5.0423 -1.8495 0.0477 39 1 3.4736 -2.6868 -0.0379 40 1 3.7056 -1.6707 2.1781 41 1 4.0711 -0.0856 1.4471 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345975597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:31 Heat of formation + Delta-G solvation = -137.060345 kcal Electronic energy + Delta-G solvation = -22707.187760 eV Core-core repulsion = 19358.595896 eV Total energy + Delta-G solvation = -3348.591865 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.84399 -40.83120 -38.54532 -37.16529 -36.47412 -34.85370 -33.94149 -31.00891 -29.77777 -27.26980 -25.52058 -24.17333 -23.30854 -23.15332 -21.69935 -20.62378 -20.11504 -18.86625 -18.26376 -17.56252 -17.25017 -16.88285 -16.55084 -16.33476 -15.86914 -15.58271 -15.12649 -14.64613 -14.52298 -14.13979 -13.79888 -13.60098 -13.31185 -13.18195 -13.12319 -13.02207 -12.79474 -12.70295 -12.49825 -12.31061 -12.19685 -12.03879 -12.00164 -11.92877 -11.72511 -11.31562 -11.21860 -10.96239 -10.45376 -10.39083 -10.32691 -8.25011 -6.40867 0.94652 1.37814 1.43417 1.44342 1.55715 2.02161 2.43213 3.03492 3.06470 3.18407 3.49482 3.65055 3.77251 3.89956 4.10672 4.14227 4.21392 4.27646 4.31573 4.33086 4.33584 4.51150 4.58265 4.78277 4.80381 4.91137 4.94155 4.95055 5.00235 5.04245 5.08012 5.20748 5.24221 5.28250 5.30030 5.33272 5.55705 5.59819 5.95476 6.15926 6.50612 6.65021 7.03304 7.30295 8.82223 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.024175 B = 0.004561 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.934846 B = 6138.167818 C = 6830.753421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.132 4.132 3 H 0.141 0.859 4 C -0.088 4.088 5 C -0.077 4.077 6 H 0.144 0.856 7 C 0.449 3.551 8 O -0.546 6.546 9 O -0.352 6.352 10 C 0.255 3.745 11 H 0.003 0.997 12 C -0.541 4.541 13 H 0.069 0.931 14 C 0.019 3.981 15 N -0.914 5.914 16 Si 0.975 3.025 17 H -0.275 1.275 18 H -0.279 1.279 19 H -0.261 1.261 20 C -0.151 4.151 21 C -0.163 4.163 22 C -0.202 4.202 23 C -0.103 4.103 24 C -0.156 4.156 25 C 0.364 3.636 26 O -0.491 6.491 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.268 0.732 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.060 10.331 11.137 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 H 0.158 0.842 4 C -0.125 4.125 5 C -0.096 4.096 6 H 0.162 0.838 7 C 0.294 3.706 8 O -0.437 6.437 9 O -0.268 6.268 10 C 0.202 3.798 11 H 0.021 0.979 12 C -0.579 4.579 13 H 0.087 0.913 14 C -0.181 4.181 15 N -0.552 5.552 16 Si 0.799 3.201 17 H -0.200 1.200 18 H -0.204 1.204 19 H -0.185 1.185 20 C -0.169 4.169 21 C -0.200 4.200 22 C -0.238 4.238 23 C -0.141 4.141 24 C -0.194 4.194 25 C 0.242 3.758 26 O -0.366 6.366 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.627 9.970 11.133 16.348 hybrid contribution 0.573 -1.060 -0.782 1.437 sum -6.054 8.910 10.351 14.939 Atomic orbital electron populations 1.21652 0.93025 1.02048 1.02987 1.21908 0.97965 1.02440 0.92732 0.84171 1.21409 0.91704 1.01407 0.98009 1.21256 0.97201 1.02257 0.88886 0.83823 1.24398 0.81276 0.75603 0.89361 1.90579 1.58272 1.49376 1.45472 1.86467 1.24893 1.72131 1.43353 1.19668 0.93720 0.89089 0.77340 0.97936 1.21256 1.09689 1.30103 0.96831 0.91255 1.25764 1.00987 0.97073 0.94300 1.70111 1.41302 1.42513 1.01291 0.85293 0.78230 0.78505 0.78074 1.20031 1.20425 1.18464 1.22718 1.01225 0.91265 1.01736 1.22893 1.00896 0.96327 0.99852 1.23138 0.94234 1.06085 1.00392 1.21456 1.03513 0.97837 0.91298 1.22305 0.93713 1.04811 0.98548 1.25357 0.91530 0.73426 0.85469 1.90383 1.61046 1.44043 1.41155 0.91733 0.90364 0.93843 0.92560 0.89567 0.92305 0.88160 0.88499 0.88106 0.89190 0.89412 0.88775 0.92498 0.88423 0.84601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.60 71.98 0.62 -1.81 16 2 C -0.13 -2.18 3.01 -11.28 -0.03 -2.22 16 3 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.09 -1.90 3.83 30.66 0.12 -1.79 16 5 C -0.08 -1.83 2.52 -11.57 -0.03 -1.86 16 6 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 7 C 0.45 16.70 6.20 71.24 0.44 17.14 16 8 O -0.55 -24.01 12.99 21.98 0.29 -23.73 16 9 O -0.35 -15.30 8.21 -51.38 -0.42 -15.72 16 10 C 0.26 13.35 2.41 29.85 0.07 13.43 16 11 H 0.00 0.18 7.16 -2.39 -0.02 0.16 16 12 C -0.54 -29.68 8.90 25.60 0.23 -29.46 16 13 H 0.07 3.70 7.81 -2.91 -0.02 3.67 16 14 C 0.02 1.01 5.20 84.65 0.44 1.45 16 15 N -0.91 -52.00 11.59 21.45 0.25 -51.75 16 16 Si 0.98 42.13 29.54 68.60 2.03 44.15 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 20 C -0.15 -7.31 5.27 -10.79 -0.06 -7.36 16 21 C -0.16 -6.23 9.80 30.62 0.30 -5.93 16 22 C -0.20 -8.36 9.85 30.62 0.30 -8.05 16 23 C -0.10 -2.22 5.17 30.66 0.16 -2.06 16 24 C -0.16 -2.47 6.17 30.11 0.19 -2.28 16 25 C 0.36 7.23 6.58 29.46 0.19 7.42 16 26 O -0.49 -13.17 16.86 -1.45 -0.02 -13.19 16 27 H 0.06 1.10 8.04 -2.39 -0.02 1.08 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 31 H 0.09 1.91 8.00 -2.39 -0.02 1.89 16 32 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 33 H 0.10 5.44 6.46 -2.39 -0.02 5.43 16 34 H 0.10 3.44 6.91 -2.38 -0.02 3.42 16 35 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 36 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 37 H 0.09 3.75 5.37 -2.38 -0.01 3.74 16 38 H 0.09 2.10 8.02 -2.39 -0.02 2.08 16 39 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -68.42 331.51 6.07 -62.35 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 1.01 Total: 21.27 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 2.94 Total: -23.39 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: 0.25 Total: -51.75 kcal Atomic # 8 Polarization: -52.48 SS G_CDS: -0.16 Total: -52.64 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -68.42 6.07 -62.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345975597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.707 kcal (2) G-P(sol) polarization free energy of solvation -68.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds