Wall clock time and date at job start Tue Mar 31 2020 01:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.62114 * 2 1 4 4 C 1.53229 * 109.62773 * 239.62163 * 2 1 3 5 5 C 1.52965 * 109.41314 * 294.70927 * 4 2 1 6 6 H 1.09000 * 109.40611 * 56.51554 * 5 4 2 7 7 C 1.50695 * 109.41398 * 176.30089 * 5 4 2 8 8 O 1.20834 * 120.00205 * 0.02562 * 7 5 4 9 9 O 1.34228 * 120.00061 * 179.97438 * 7 5 4 10 10 C 1.45195 * 117.00054 * 180.02562 * 9 7 5 11 11 H 1.09006 * 109.47505 * 330.00184 * 10 9 7 12 12 C 1.50695 * 109.47447 * 210.00490 * 10 9 7 13 13 H 1.07998 * 120.00120 * 359.97438 * 12 10 9 14 14 C 1.37878 * 120.00612 * 180.02562 * 12 10 9 15 15 N 1.31521 * 119.99412 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 120.00406 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46852 * 60.00022 * 16 14 12 18 18 H 1.48506 * 109.47045 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47282 * 300.00070 * 16 14 12 20 20 C 1.52999 * 109.47203 * 90.00354 * 10 9 7 21 21 C 1.52999 * 117.49831 * 8.62006 * 20 10 9 22 22 C 1.52997 * 60.00343 * 252.51092 * 21 20 10 23 23 C 1.52951 * 109.81766 * 296.42326 * 5 4 2 24 24 C 1.53235 * 109.41904 * 63.57924 * 23 5 4 25 25 C 1.51265 * 109.78805 * 120.47575 * 2 1 3 26 26 O 1.20756 * 120.85097 * 248.48678 * 25 2 1 27 27 H 1.08997 * 109.46945 * 180.38391 * 1 2 3 28 28 H 1.09005 * 109.47433 * 300.38109 * 1 2 3 29 29 H 1.08994 * 109.47428 * 60.38532 * 1 2 3 30 30 H 1.09002 * 109.48399 * 54.69697 * 4 2 1 31 31 H 1.08999 * 109.48488 * 174.72716 * 4 2 1 32 32 H 0.97006 * 119.99770 * 180.02562 * 15 14 12 33 33 H 1.08995 * 115.55429 * 154.32965 * 20 10 9 34 34 H 1.09003 * 117.49844 * 0.02562 * 21 20 10 35 35 H 1.08999 * 117.50156 * 145.01869 * 21 20 10 36 36 H 1.09001 * 117.49908 * 252.50822 * 22 21 20 37 37 H 1.09005 * 117.49897 * 107.48249 * 22 21 20 38 38 H 1.08995 * 109.47552 * 303.59515 * 23 5 4 39 39 H 1.08998 * 109.49138 * 183.57118 * 23 5 4 40 40 H 1.08995 * 109.62638 * 185.66368 * 24 23 5 41 41 H 1.09002 * 109.78512 * 65.17863 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8960 1.0268 0.0000 4 6 2.0446 -0.7299 -1.2451 5 6 1.6474 -2.2051 -1.1702 6 1 0.5657 -2.2839 -1.0610 7 6 2.0738 -2.9035 -2.4356 8 8 2.6377 -2.2845 -3.3068 9 8 1.8282 -4.2135 -2.5947 10 6 2.2674 -4.8204 -3.8384 11 1 2.2438 -4.0758 -4.6343 12 6 1.3499 -5.9624 -4.1918 13 1 0.5199 -6.2079 -3.5459 14 6 1.5706 -6.6946 -5.3390 15 7 2.5817 -6.3959 -6.1253 16 14 0.4337 -8.1106 -5.7766 17 1 -0.9520 -7.6014 -5.9371 18 1 0.8829 -8.7312 -7.0488 19 1 0.4660 -9.1246 -4.6922 20 6 3.6950 -5.3454 -3.6735 21 6 4.2931 -5.3353 -2.2653 22 6 4.7830 -4.3323 -3.3116 23 6 2.3287 -2.8653 0.0295 24 6 1.8247 -2.2158 1.3227 25 6 2.0420 -0.7219 1.2267 26 8 2.6094 -0.1209 2.1071 27 1 -0.3633 -1.0276 0.0069 28 1 -0.3634 0.5198 0.8866 29 1 -0.3634 0.5078 -0.8934 30 1 1.6074 -0.2804 -2.1367 31 1 3.1305 -0.6478 -1.2918 32 1 2.7368 -6.9108 -6.9327 33 1 3.9725 -6.1680 -4.3326 34 1 3.6694 -4.9550 -1.4563 35 1 4.9641 -6.1515 -1.9976 36 1 5.7763 -4.4885 -3.7323 37 1 4.4815 -3.2917 -3.1911 38 1 3.4078 -2.7329 -0.0471 39 1 2.0930 -3.9295 0.0414 40 1 2.3801 -2.6128 2.1723 41 1 0.7623 -2.4237 1.4502 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345975598.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:34 Heat of formation + Delta-G solvation = -120.392977 kcal Electronic energy + Delta-G solvation = -22916.060788 eV Core-core repulsion = 19568.191675 eV Total energy + Delta-G solvation = -3347.869113 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.65272 -39.55830 -37.14300 -36.07889 -34.76347 -32.91195 -32.68322 -30.05773 -27.94424 -26.37262 -23.70616 -23.00428 -22.70883 -21.47721 -20.41321 -19.02271 -18.55759 -17.24699 -16.70343 -16.19832 -15.94157 -15.55311 -15.19513 -14.76107 -14.53426 -14.32058 -13.90362 -13.77050 -13.12952 -12.85461 -12.76107 -12.49864 -12.23703 -11.98208 -11.76518 -11.54404 -11.42633 -11.24874 -11.11205 -11.00331 -10.97015 -10.64917 -10.54318 -10.34316 -10.11967 -9.64762 -9.52494 -9.45274 -9.15355 -8.56683 -8.47564 -6.22280 -4.29803 1.78506 2.87517 3.23569 3.27519 3.28915 3.51490 3.89884 4.28983 4.39530 4.55366 4.73747 4.83281 4.89297 4.92574 5.06128 5.10360 5.22079 5.25681 5.35293 5.51452 5.60163 5.70042 5.76358 5.79779 5.81437 5.92740 5.92881 6.05554 6.10436 6.15511 6.18019 6.42485 6.65299 6.85818 6.97326 7.15571 7.31242 7.53138 7.55703 7.80472 8.07672 8.56177 8.82767 9.34922 10.84780 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.026309 B = 0.004545 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.014262 B = 6159.636791 C = 6467.335722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 H 0.097 0.903 4 C -0.095 4.095 5 C -0.089 4.089 6 H 0.111 0.889 7 C 0.456 3.544 8 O -0.514 6.514 9 O -0.350 6.350 10 C 0.248 3.752 11 H 0.052 0.948 12 C -0.519 4.519 13 H 0.069 0.931 14 C 0.065 3.935 15 N -0.885 5.885 16 Si 0.909 3.091 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.116 4.116 21 C -0.195 4.195 22 C -0.210 4.210 23 C -0.106 4.106 24 C -0.167 4.167 25 C 0.367 3.633 26 O -0.460 6.460 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.267 0.733 33 H 0.129 0.871 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.891 7.909 11.312 14.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 H 0.116 0.884 4 C -0.133 4.133 5 C -0.109 4.109 6 H 0.128 0.872 7 C 0.298 3.702 8 O -0.404 6.404 9 O -0.266 6.266 10 C 0.196 3.804 11 H 0.070 0.930 12 C -0.557 4.557 13 H 0.088 0.912 14 C -0.138 4.138 15 N -0.522 5.522 16 Si 0.736 3.264 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.134 4.134 21 C -0.232 4.232 22 C -0.247 4.247 23 C -0.144 4.144 24 C -0.205 4.205 25 C 0.243 3.757 26 O -0.333 6.333 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.147 0.853 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.318 8.299 11.307 14.216 hybrid contribution -0.347 -0.824 -0.548 1.049 sum -2.665 7.474 10.759 13.369 Atomic orbital electron populations 1.21812 0.92440 1.03096 1.02895 1.21955 0.98168 1.00985 0.94647 0.88431 1.21479 1.02415 0.92504 0.96901 1.21109 1.03155 0.94766 0.91824 0.87153 1.23192 0.76295 0.82647 0.88038 1.90594 1.39228 1.67036 1.43510 1.86480 1.73103 1.21947 1.45026 1.20137 0.89959 0.92343 0.77998 0.93044 1.20902 1.12537 1.14485 1.07803 0.91234 1.24899 0.95720 0.97639 0.95548 1.69975 1.28454 1.40226 1.13561 0.86371 0.80633 0.81608 0.77761 1.19973 1.21052 1.19909 1.23020 0.93776 1.00888 0.95747 1.22814 1.04259 1.01838 0.94314 1.23139 0.99613 0.96890 1.05101 1.21515 1.00805 1.01303 0.90782 1.22311 1.04333 0.93797 1.00014 1.24962 0.73788 0.91432 0.85531 1.90394 1.32358 1.70772 1.39822 0.91410 0.92218 0.90975 0.89442 0.90530 0.92327 0.85330 0.89676 0.90482 0.90578 0.88850 0.90779 0.88705 0.88880 0.87899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.90 37.15 0.33 -0.81 16 2 C -0.14 -1.35 3.16 -91.38 -0.29 -1.64 16 3 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.10 -1.12 4.01 -26.63 -0.11 -1.22 16 5 C -0.09 -1.16 2.36 -91.82 -0.22 -1.37 16 6 H 0.11 1.22 6.43 -51.93 -0.33 0.89 16 7 C 0.46 8.51 6.20 36.00 0.22 8.74 16 8 O -0.51 -11.01 12.99 -18.76 -0.24 -11.26 16 9 O -0.35 -7.56 8.20 -39.25 -0.32 -7.88 16 10 C 0.25 6.28 2.41 -27.89 -0.07 6.22 16 11 H 0.05 1.47 7.16 -51.93 -0.37 1.10 16 12 C -0.52 -13.92 8.90 -34.44 -0.31 -14.22 16 13 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 14 C 0.06 1.72 5.20 -17.82 -0.09 1.63 16 15 N -0.89 -24.40 11.59 55.43 0.64 -23.75 16 16 Si 0.91 20.41 29.54 -169.99 -5.02 15.39 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 C -0.12 -2.77 5.28 -90.62 -0.48 -3.25 16 21 C -0.20 -3.93 9.79 -26.73 -0.26 -4.19 16 22 C -0.21 -4.46 9.85 -26.73 -0.26 -4.72 16 23 C -0.11 -1.22 5.14 -26.64 -0.14 -1.35 16 24 C -0.17 -1.57 5.90 -27.48 -0.16 -1.74 16 25 C 0.37 4.12 6.07 -28.48 -0.17 3.94 16 26 O -0.46 -6.65 17.89 6.00 0.11 -6.54 16 27 H 0.07 0.49 6.01 -51.93 -0.31 0.18 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 1.05 8.00 -51.93 -0.42 0.63 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.13 3.39 6.46 -51.93 -0.34 3.05 16 34 H 0.08 1.62 6.87 -51.93 -0.36 1.26 16 35 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.09 2.03 5.37 -51.93 -0.28 1.75 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 1.11 8.02 -51.93 -0.42 0.70 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.10 0.76 7.81 -51.93 -0.41 0.36 16 LS Contribution 328.07 15.07 4.94 4.94 Total: -1.00 -30.19 328.07 -8.05 -38.24 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.15 Total: 4.86 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -2.00 Total: -14.00 kcal Atomic # 7 Polarization: -24.40 SS G_CDS: 0.64 Total: -23.75 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.46 Total: -25.68 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.19 -8.05 -38.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345975598.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.153 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds