Wall clock time and date at job start Tue Mar 31 2020 01:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.62562 * 2 1 4 4 C 1.53231 * 109.62452 * 239.62083 * 2 1 3 5 5 C 1.52960 * 109.40343 * 185.65610 * 4 2 1 6 6 H 1.09001 * 109.41355 * 303.49352 * 5 4 2 7 7 C 1.50704 * 109.41297 * 183.70295 * 5 4 2 8 8 O 1.20822 * 119.99889 * 0.02562 * 7 5 4 9 9 O 1.34232 * 119.99686 * 179.97438 * 7 5 4 10 10 C 1.45198 * 116.99679 * 180.02562 * 9 7 5 11 11 H 1.09004 * 109.47156 * 30.00019 * 10 9 7 12 12 C 1.50699 * 109.47175 * 150.00644 * 10 9 7 13 13 H 1.07998 * 120.00483 * 115.32481 * 12 10 9 14 14 C 1.37886 * 119.99615 * 295.32001 * 12 10 9 15 15 N 1.31511 * 119.99554 * 174.13347 * 14 12 10 16 16 Si 1.86803 * 120.00049 * 354.13209 * 14 12 10 17 17 H 1.48500 * 109.47064 * 85.20777 * 16 14 12 18 18 H 1.48494 * 109.47057 * 205.20645 * 16 14 12 19 19 H 1.48498 * 109.47110 * 325.20706 * 16 14 12 20 20 C 1.53003 * 109.47169 * 270.00528 * 10 9 7 21 21 C 1.52998 * 117.49893 * 133.98987 * 20 10 9 22 22 C 1.52993 * 117.50071 * 65.32688 * 20 10 9 23 23 C 1.52960 * 109.81494 * 63.60254 * 5 4 2 24 24 C 1.53235 * 109.39941 * 296.39781 * 23 5 4 25 25 C 1.51265 * 109.62475 * 120.38259 * 2 1 3 26 26 O 1.20753 * 120.85138 * 351.03684 * 25 2 1 27 27 H 1.08999 * 109.47062 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47360 * 59.99544 * 1 2 3 29 29 H 1.09003 * 109.47035 * 300.00109 * 1 2 3 30 30 H 1.08997 * 109.48367 * 305.64123 * 4 2 1 31 31 H 1.09000 * 109.47956 * 65.67011 * 4 2 1 32 32 H 0.97000 * 119.99658 * 179.97438 * 15 14 12 33 33 H 1.09000 * 115.55101 * 279.65521 * 20 10 9 34 34 H 1.08999 * 117.49990 * 359.97438 * 21 20 10 35 35 H 1.08997 * 117.50214 * 145.01979 * 21 20 10 36 36 H 1.09006 * 117.50267 * 214.98023 * 22 20 10 37 37 H 1.08997 * 117.50189 * 359.97438 * 22 20 10 38 38 H 1.08995 * 109.48449 * 56.37824 * 23 5 4 39 39 H 1.08999 * 109.48203 * 176.42111 * 23 5 4 40 40 H 1.09005 * 109.62258 * 174.34763 * 24 23 5 41 41 H 1.08998 * 109.63111 * 294.91133 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0446 -0.7299 -1.2451 5 6 3.5676 -0.8508 -1.1702 6 1 4.0049 0.1417 -1.0608 7 6 4.0825 -1.4869 -2.4357 8 8 3.3103 -1.8094 -3.3071 9 8 5.3991 -1.6941 -2.5950 10 6 5.8235 -2.3106 -3.8392 11 1 5.1297 -2.0384 -4.6347 12 6 7.2069 -1.8286 -4.1924 13 1 8.0319 -2.5253 -4.2161 14 6 7.4195 -0.4981 -4.4853 15 7 8.6423 -0.0550 -4.6802 16 14 5.9707 0.6749 -4.6054 17 1 5.6286 1.1792 -3.2512 18 1 6.3304 1.8176 -5.4829 19 1 4.8014 -0.0396 -5.1776 20 6 5.8398 -3.8317 -3.6752 21 6 5.2065 -4.6691 -4.7881 22 6 4.5000 -4.5310 -3.4372 23 6 3.9608 -1.7146 0.0294 24 6 3.5182 -1.0217 1.3225 25 6 2.0380 -0.7206 1.2291 26 8 1.2815 -1.0502 2.1107 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 1.6027 -1.7252 -1.2917 31 1 1.7679 -0.1672 -2.1367 32 1 8.7919 0.8809 -4.8866 33 1 6.7171 -4.2412 -3.1745 34 1 4.7779 -4.1363 -5.6370 35 1 5.6669 -5.6296 -5.0194 36 1 4.4958 -5.4008 -2.7802 37 1 3.6069 -3.9075 -3.3971 38 1 3.4736 -2.6866 -0.0473 39 1 5.0423 -1.8498 0.0411 40 1 3.7057 -1.6782 2.1722 41 1 4.0711 -0.0906 1.4467 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345975599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:37 Heat of formation + Delta-G solvation = -119.866148 kcal Electronic energy + Delta-G solvation = -22980.599996 eV Core-core repulsion = 19632.753728 eV Total energy + Delta-G solvation = -3347.846268 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.54455 -39.54324 -37.12431 -36.01606 -35.09539 -33.12609 -32.74191 -29.94673 -28.54384 -26.33499 -23.62343 -22.83077 -22.42033 -21.76587 -20.14088 -19.33698 -19.19089 -17.25584 -16.94068 -16.18772 -15.94856 -15.80111 -15.28740 -14.87860 -14.59704 -14.11560 -13.95017 -13.72698 -13.09620 -12.90238 -12.70150 -12.53078 -12.26488 -12.18140 -11.83830 -11.57464 -11.46907 -11.37484 -11.12665 -11.12195 -10.94334 -10.85937 -10.73969 -10.28808 -9.88801 -9.69355 -9.47187 -9.46417 -9.41668 -9.05814 -8.81227 -6.38554 -4.44483 1.81909 2.86728 3.14848 3.22206 3.29968 3.47387 3.89334 4.21981 4.45414 4.47541 4.60458 4.74199 4.84424 5.01177 5.06944 5.13950 5.26631 5.31497 5.38850 5.41990 5.59643 5.62414 5.63313 5.70258 5.75737 5.84453 5.89247 5.96923 6.01830 6.13533 6.16539 6.17889 6.25685 6.46080 6.58121 6.71087 6.94166 7.32413 7.35766 7.62027 8.20674 8.62104 8.70967 9.22772 10.71053 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018411 B = 0.005889 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.433788 B = 4753.823584 C = 5365.876600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.142 4.142 3 H 0.106 0.894 4 C -0.093 4.093 5 C -0.097 4.097 6 H 0.107 0.893 7 C 0.452 3.548 8 O -0.524 6.524 9 O -0.349 6.349 10 C 0.204 3.796 11 H 0.051 0.949 12 C -0.508 4.508 13 H 0.089 0.911 14 C 0.090 3.910 15 N -0.871 5.871 16 Si 0.869 3.131 17 H -0.269 1.269 18 H -0.285 1.285 19 H -0.259 1.259 20 C -0.139 4.139 21 C -0.170 4.170 22 C -0.201 4.201 23 C -0.103 4.103 24 C -0.168 4.168 25 C 0.365 3.635 26 O -0.457 6.457 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.271 0.729 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.063 -0.395 8.584 14.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.161 4.161 3 H 0.124 0.876 4 C -0.130 4.130 5 C -0.117 4.117 6 H 0.125 0.875 7 C 0.295 3.705 8 O -0.415 6.415 9 O -0.265 6.265 10 C 0.153 3.847 11 H 0.069 0.931 12 C -0.544 4.544 13 H 0.107 0.893 14 C -0.117 4.117 15 N -0.507 5.507 16 Si 0.696 3.304 17 H -0.195 1.195 18 H -0.211 1.211 19 H -0.183 1.183 20 C -0.157 4.157 21 C -0.208 4.208 22 C -0.238 4.238 23 C -0.141 4.141 24 C -0.205 4.205 25 C 0.240 3.760 26 O -0.330 6.330 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.517 -0.546 8.713 14.452 hybrid contribution -0.447 0.731 -0.263 0.896 sum -11.964 0.185 8.450 14.649 Atomic orbital electron populations 1.21637 0.92958 1.02767 1.02160 1.21919 0.98007 1.01338 0.94859 0.87608 1.21465 0.92800 1.02021 0.96726 1.21194 0.96558 1.01427 0.92471 0.87493 1.23353 0.83321 0.75973 0.87858 1.90531 1.58173 1.49270 1.43566 1.86994 1.22122 1.71511 1.45909 1.20724 0.96394 0.86911 0.80678 0.93112 1.20996 0.92786 0.95340 1.45243 0.89347 1.25055 0.95729 0.98151 0.92783 1.69907 1.20107 1.16108 1.44604 0.86916 0.83708 0.80857 0.78963 1.19479 1.21104 1.18307 1.22616 0.95499 0.95179 1.02403 1.22799 1.04324 1.00996 0.92635 1.23171 0.97874 1.03056 0.99680 1.21464 1.03754 0.98239 0.90623 1.22345 0.94670 1.03485 1.00031 1.24975 0.90972 0.74388 0.85642 1.90372 1.60149 1.42794 1.39709 0.92177 0.91798 0.92021 0.90476 0.89706 0.91923 0.88020 0.89081 0.89459 0.90054 0.87866 0.90908 0.88573 0.88842 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.59 37.16 0.32 -1.06 16 2 C -0.14 -1.50 3.00 -91.38 -0.27 -1.77 16 3 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.09 -1.16 3.83 -26.63 -0.10 -1.26 16 5 C -0.10 -1.39 2.52 -91.81 -0.23 -1.62 16 6 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 7 C 0.45 8.75 6.02 36.01 0.22 8.97 16 8 O -0.52 -11.08 12.89 -18.75 -0.24 -11.32 16 9 O -0.35 -7.75 8.38 -39.26 -0.33 -8.08 16 10 C 0.20 4.85 1.52 -27.88 -0.04 4.81 16 11 H 0.05 1.29 5.57 -51.93 -0.29 1.00 16 12 C -0.51 -13.79 9.32 -34.44 -0.32 -14.11 16 13 H 0.09 2.54 7.99 -52.49 -0.42 2.13 16 14 C 0.09 2.49 5.47 -17.82 -0.10 2.39 16 15 N -0.87 -25.14 13.96 55.43 0.77 -24.37 16 16 Si 0.87 21.15 25.98 -169.99 -4.42 16.73 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.26 -6.39 6.52 56.52 0.37 -6.02 16 20 C -0.14 -2.84 5.29 -90.62 -0.48 -3.32 16 21 C -0.17 -3.07 10.18 -26.69 -0.27 -3.34 16 22 C -0.20 -3.60 9.82 -26.70 -0.26 -3.86 16 23 C -0.10 -1.25 5.17 -26.63 -0.14 -1.39 16 24 C -0.17 -1.70 6.16 -27.45 -0.17 -1.87 16 25 C 0.36 4.24 6.60 -28.45 -0.19 4.06 16 26 O -0.46 -6.57 16.87 6.01 0.10 -6.47 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.61 8.05 -51.93 -0.42 0.19 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 1.10 8.00 -51.93 -0.42 0.69 16 32 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.10 2.06 8.14 -51.93 -0.42 1.64 16 34 H 0.09 1.68 8.08 -51.93 -0.42 1.26 16 35 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.10 1.98 5.58 -51.93 -0.29 1.69 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.10 1.21 8.02 -51.93 -0.42 0.80 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 331.46 15.07 5.00 5.00 Total: -1.00 -30.57 331.46 -7.64 -38.21 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.49 Total: 3.67 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -2.04 Total: -13.38 kcal Atomic # 7 Polarization: -25.14 SS G_CDS: 0.77 Total: -24.37 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.47 Total: -25.86 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.42 Total: 16.73 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.57 -7.64 -38.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345975599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.654 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds