Wall clock time and date at job start Tue Mar 31 2020 01:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.62562 * 2 1 4 4 C 1.53231 * 109.62452 * 239.62083 * 2 1 3 5 5 C 1.52960 * 109.40343 * 185.65610 * 4 2 1 6 6 H 1.09001 * 109.41355 * 303.49352 * 5 4 2 7 7 C 1.50704 * 109.41297 * 183.70295 * 5 4 2 8 8 O 1.20822 * 119.99889 * 0.02562 * 7 5 4 9 9 O 1.34232 * 119.99686 * 179.97438 * 7 5 4 10 10 C 1.45198 * 116.99679 * 180.02562 * 9 7 5 11 11 H 1.09004 * 109.47156 * 30.00019 * 10 9 7 12 12 C 1.50699 * 109.47175 * 150.00644 * 10 9 7 13 13 H 1.07998 * 120.00483 * 115.32481 * 12 10 9 14 14 C 1.37886 * 119.99615 * 295.32001 * 12 10 9 15 15 N 1.31511 * 119.99554 * 174.13347 * 14 12 10 16 16 Si 1.86803 * 120.00049 * 354.13209 * 14 12 10 17 17 H 1.48500 * 109.47064 * 85.20777 * 16 14 12 18 18 H 1.48494 * 109.47057 * 205.20645 * 16 14 12 19 19 H 1.48498 * 109.47110 * 325.20706 * 16 14 12 20 20 C 1.53003 * 109.47169 * 270.00528 * 10 9 7 21 21 C 1.52998 * 117.49893 * 133.98987 * 20 10 9 22 22 C 1.52993 * 117.50071 * 65.32688 * 20 10 9 23 23 C 1.52960 * 109.81494 * 63.60254 * 5 4 2 24 24 C 1.53235 * 109.39941 * 296.39781 * 23 5 4 25 25 C 1.51265 * 109.62475 * 120.38259 * 2 1 3 26 26 O 1.20753 * 120.85138 * 351.03684 * 25 2 1 27 27 H 1.08999 * 109.47062 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47360 * 59.99544 * 1 2 3 29 29 H 1.09003 * 109.47035 * 300.00109 * 1 2 3 30 30 H 1.08997 * 109.48367 * 305.64123 * 4 2 1 31 31 H 1.09000 * 109.47956 * 65.67011 * 4 2 1 32 32 H 0.97000 * 119.99658 * 179.97438 * 15 14 12 33 33 H 1.09000 * 115.55101 * 279.65521 * 20 10 9 34 34 H 1.08999 * 117.49990 * 359.97438 * 21 20 10 35 35 H 1.08997 * 117.50214 * 145.01979 * 21 20 10 36 36 H 1.09006 * 117.50267 * 214.98023 * 22 20 10 37 37 H 1.08997 * 117.50189 * 359.97438 * 22 20 10 38 38 H 1.08995 * 109.48449 * 56.37824 * 23 5 4 39 39 H 1.08999 * 109.48203 * 176.42111 * 23 5 4 40 40 H 1.09005 * 109.62258 * 174.34763 * 24 23 5 41 41 H 1.08998 * 109.63111 * 294.91133 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0446 -0.7299 -1.2451 5 6 3.5676 -0.8508 -1.1702 6 1 4.0049 0.1417 -1.0608 7 6 4.0825 -1.4869 -2.4357 8 8 3.3103 -1.8094 -3.3071 9 8 5.3991 -1.6941 -2.5950 10 6 5.8235 -2.3106 -3.8392 11 1 5.1297 -2.0384 -4.6347 12 6 7.2069 -1.8286 -4.1924 13 1 8.0319 -2.5253 -4.2161 14 6 7.4195 -0.4981 -4.4853 15 7 8.6423 -0.0550 -4.6802 16 14 5.9707 0.6749 -4.6054 17 1 5.6286 1.1792 -3.2512 18 1 6.3304 1.8176 -5.4829 19 1 4.8014 -0.0396 -5.1776 20 6 5.8398 -3.8317 -3.6752 21 6 5.2065 -4.6691 -4.7881 22 6 4.5000 -4.5310 -3.4372 23 6 3.9608 -1.7146 0.0294 24 6 3.5182 -1.0217 1.3225 25 6 2.0380 -0.7206 1.2291 26 8 1.2815 -1.0502 2.1107 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 1.6027 -1.7252 -1.2917 31 1 1.7679 -0.1672 -2.1367 32 1 8.7919 0.8809 -4.8866 33 1 6.7171 -4.2412 -3.1745 34 1 4.7779 -4.1363 -5.6370 35 1 5.6669 -5.6296 -5.0194 36 1 4.4958 -5.4008 -2.7802 37 1 3.6069 -3.9075 -3.3971 38 1 3.4736 -2.6866 -0.0473 39 1 5.0423 -1.8498 0.0411 40 1 3.7057 -1.6782 2.1722 41 1 4.0711 -0.0906 1.4467 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345975599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:37 Heat of formation + Delta-G solvation = -136.355613 kcal Electronic energy + Delta-G solvation = -22981.315033 eV Core-core repulsion = 19632.753728 eV Total energy + Delta-G solvation = -3348.561305 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.82410 -40.82630 -38.57526 -37.24638 -36.73164 -34.85816 -33.96700 -31.13578 -30.28809 -27.27891 -25.33352 -24.22069 -23.36611 -23.18853 -21.58307 -20.95790 -20.13994 -19.23944 -18.50681 -17.52127 -17.35391 -16.87520 -16.67444 -16.15378 -15.82961 -15.60969 -15.28287 -15.02807 -14.63030 -14.22738 -14.03447 -13.77703 -13.40064 -13.29734 -13.23122 -13.12519 -12.79769 -12.72577 -12.52410 -12.34592 -12.15847 -12.02300 -11.99588 -11.84454 -11.76682 -11.28023 -11.23634 -11.02553 -10.88240 -10.74095 -10.35676 -8.49721 -6.60035 0.91496 1.20133 1.24131 1.33184 1.38097 1.91995 2.20324 2.96449 2.99670 3.05307 3.47520 3.62727 3.76267 3.86899 3.89630 4.07183 4.10838 4.18485 4.20639 4.27085 4.31742 4.41810 4.51168 4.65069 4.74699 4.75989 4.84996 4.88344 4.91296 4.97962 4.99528 5.03223 5.16995 5.21516 5.26226 5.26827 5.32556 5.35365 5.91548 6.14882 6.47313 6.50289 7.01125 7.11539 8.64107 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018411 B = 0.005889 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.433788 B = 4753.823584 C = 5365.876600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 H 0.131 0.869 4 C -0.086 4.086 5 C -0.093 4.093 6 H 0.125 0.875 7 C 0.445 3.555 8 O -0.543 6.543 9 O -0.360 6.360 10 C 0.213 3.787 11 H 0.032 0.968 12 C -0.521 4.521 13 H 0.057 0.943 14 C 0.046 3.954 15 N -0.914 5.914 16 Si 0.918 3.082 17 H -0.248 1.248 18 H -0.276 1.276 19 H -0.268 1.268 20 C -0.167 4.167 21 C -0.162 4.162 22 C -0.179 4.179 23 C -0.098 4.098 24 C -0.160 4.160 25 C 0.368 3.632 26 O -0.487 6.487 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.275 0.725 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.696 0.047 9.873 16.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.155 4.155 3 H 0.149 0.851 4 C -0.124 4.124 5 C -0.112 4.112 6 H 0.143 0.857 7 C 0.290 3.710 8 O -0.435 6.435 9 O -0.276 6.276 10 C 0.161 3.839 11 H 0.050 0.950 12 C -0.557 4.557 13 H 0.075 0.925 14 C -0.158 4.158 15 N -0.552 5.552 16 Si 0.742 3.258 17 H -0.172 1.172 18 H -0.201 1.201 19 H -0.193 1.193 20 C -0.185 4.185 21 C -0.199 4.199 22 C -0.216 4.216 23 C -0.136 4.136 24 C -0.197 4.197 25 C 0.245 3.755 26 O -0.362 6.362 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.155 -0.102 10.012 16.532 hybrid contribution 0.032 0.512 -0.675 0.848 sum -13.123 0.410 9.337 16.111 Atomic orbital electron populations 1.21637 0.92613 1.02331 1.02909 1.21925 0.98282 1.02212 0.93106 0.85091 1.21406 0.91354 1.01924 0.97693 1.21356 0.97585 1.01989 0.90230 0.85741 1.24304 0.81890 0.75519 0.89335 1.90524 1.58165 1.50006 1.44767 1.86873 1.24251 1.71987 1.44528 1.20297 0.93852 0.88977 0.80741 0.95048 1.21133 0.93649 0.95035 1.45923 0.92451 1.25724 0.97826 0.99635 0.92571 1.69996 1.21839 1.16795 1.46534 0.86145 0.80383 0.79170 0.80094 1.17176 1.20133 1.19298 1.22492 0.97186 0.93502 1.05343 1.22932 1.03372 1.01426 0.92159 1.23163 0.95498 1.02969 0.99934 1.21423 1.03488 0.98029 0.90678 1.22327 0.93774 1.04653 0.98939 1.25257 0.91391 0.73448 0.85372 1.90377 1.60904 1.44038 1.40882 0.93265 0.90523 0.91795 0.91310 0.90036 0.91538 0.88192 0.89933 0.86615 0.87121 0.89136 0.91171 0.88986 0.87933 0.85533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.59 71.98 0.62 -1.81 16 2 C -0.14 -2.45 3.00 -11.28 -0.03 -2.49 16 3 H 0.13 1.75 8.14 -2.38 -0.02 1.73 16 4 C -0.09 -1.94 3.83 30.66 0.12 -1.83 16 5 C -0.09 -2.41 2.52 -11.57 -0.03 -2.44 16 6 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 7 C 0.44 16.62 6.02 71.24 0.43 17.05 16 8 O -0.54 -22.43 12.89 21.98 0.28 -22.15 16 9 O -0.36 -15.75 8.38 -51.44 -0.43 -16.18 16 10 C 0.21 10.22 1.52 29.85 0.05 10.27 16 11 H 0.03 1.63 5.57 -2.38 -0.01 1.62 16 12 C -0.52 -29.14 9.32 25.60 0.24 -28.90 16 13 H 0.06 3.47 7.99 -2.91 -0.02 3.45 16 14 C 0.05 2.57 5.47 84.66 0.46 3.03 16 15 N -0.91 -53.94 13.96 21.45 0.30 -53.64 16 16 Si 0.92 43.43 25.98 68.60 1.78 45.21 16 17 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.27 -12.98 6.52 99.48 0.65 -12.33 16 20 C -0.17 -6.80 5.29 -10.80 -0.06 -6.85 16 21 C -0.16 -5.62 10.18 30.62 0.31 -5.31 16 22 C -0.18 -6.09 9.82 30.62 0.30 -5.78 16 23 C -0.10 -2.15 5.17 30.66 0.16 -1.99 16 24 C -0.16 -2.71 6.16 30.13 0.19 -2.52 16 25 C 0.37 7.52 6.60 29.48 0.19 7.72 16 26 O -0.49 -12.98 16.87 -1.43 -0.02 -13.01 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.11 8.05 -2.39 -0.02 1.09 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 1.92 8.00 -2.39 -0.02 1.90 16 32 H 0.28 15.04 8.31 -92.71 -0.77 14.27 16 33 H 0.10 4.07 8.14 -2.39 -0.02 4.05 16 34 H 0.08 3.00 8.08 -2.39 -0.02 2.98 16 35 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 36 H 0.11 3.11 8.14 -2.38 -0.02 3.09 16 37 H 0.09 3.35 5.58 -2.39 -0.01 3.34 16 38 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.09 2.13 8.02 -2.39 -0.02 2.11 16 40 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 41 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -67.38 331.46 5.80 -61.58 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.95 Total: 20.04 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 2.94 Total: -21.85 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.30 Total: -53.64 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -0.17 Total: -51.34 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.78 Total: 45.21 kcal Total: -67.38 5.80 -61.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345975599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.777 kcal (2) G-P(sol) polarization free energy of solvation -67.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds