Wall clock time and date at job start Tue Mar 31 2020 01:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00086 * 2 1 4 4 H 1.48503 * 109.47317 * 270.00628 * 3 2 1 5 5 H 1.48510 * 109.47054 * 30.00276 * 3 2 1 6 6 H 1.48499 * 109.47257 * 150.00314 * 3 2 1 7 7 C 1.37876 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99746 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00200 * 359.97438 * 7 2 1 10 10 H 1.09009 * 109.47114 * 59.99233 * 9 7 2 11 11 O 1.45195 * 109.47418 * 179.97438 * 9 7 2 12 12 C 1.34232 * 117.00541 * 240.02084 * 11 9 7 13 13 O 1.20826 * 119.99648 * 1.99715 * 12 11 9 14 14 C 1.50693 * 120.00304 * 181.98910 * 12 11 9 15 15 H 1.09003 * 109.88564 * 307.99470 * 14 12 11 16 16 O 1.42892 * 109.89246 * 186.95417 * 14 12 11 17 17 C 1.42760 * 110.69421 * 222.63167 * 16 14 12 18 18 C 1.53844 * 108.46102 * 2.02305 * 17 16 14 19 19 H 1.08994 * 112.35673 * 252.48156 * 18 17 16 20 20 C 1.53906 * 108.84180 * 126.89175 * 18 17 16 21 21 C 1.54201 * 106.80668 * 249.22935 * 20 18 17 22 22 C 1.54875 * 104.21531 * 23.51198 * 21 20 18 23 23 C 1.53795 * 110.02319 * 69.11080 * 14 12 11 24 24 H 1.08997 * 112.89442 * 267.64705 * 23 14 12 25 25 C 1.52998 * 109.47286 * 299.99939 * 9 7 2 26 26 C 1.52993 * 117.50316 * 242.91659 * 25 9 7 27 27 C 1.52998 * 60.00269 * 252.50673 * 26 25 9 28 28 H 0.97000 * 119.99592 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.68306 * 121.79601 * 17 16 14 30 30 H 1.09002 * 109.68850 * 242.32238 * 17 16 14 31 31 H 1.08994 * 109.99574 * 8.56950 * 20 18 17 32 32 H 1.09003 * 109.98442 * 129.89780 * 20 18 17 33 33 H 1.09000 * 110.48039 * 264.83090 * 21 20 18 34 34 H 1.08993 * 110.58882 * 142.25112 * 21 20 18 35 35 H 1.08997 * 110.74740 * 203.46121 * 22 21 20 36 36 H 1.09003 * 110.74657 * 80.11882 * 22 21 20 37 37 H 1.09003 * 115.54698 * 28.62499 * 25 9 7 38 38 H 1.09002 * 117.49584 * 359.97438 * 26 25 9 39 39 H 1.08999 * 117.50041 * 145.01056 * 26 25 9 40 40 H 1.08996 * 117.49590 * 252.50690 * 27 26 25 41 41 H 1.09000 * 117.51773 * 107.47886 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6240 -2.5566 -0.8903 11 8 2.1946 -3.6027 -0.0018 12 6 2.1357 -4.4539 -1.0380 13 8 1.3470 -4.2622 -1.9331 14 6 3.0532 -5.6484 -1.0852 15 1 4.0851 -5.3293 -0.9383 16 8 2.9239 -6.3113 -2.3444 17 6 2.8887 -7.7275 -2.1677 18 6 2.9528 -8.0322 -0.6611 19 1 3.9177 -8.4413 -0.3615 20 6 1.7757 -8.9513 -0.2892 21 6 0.8113 -8.1133 0.5742 22 6 1.1219 -6.6485 0.1789 23 6 2.6581 -6.6593 0.0044 24 1 3.2013 -6.5108 0.9376 25 6 0.3720 -2.5805 1.2490 26 6 0.6703 -3.6973 2.2512 27 6 -0.5770 -3.7747 1.3687 28 1 -0.4849 0.8401 0.0004 29 1 1.9636 -8.1266 -2.5839 30 1 3.7430 -8.1816 -2.6697 31 1 1.2682 -9.2907 -1.1921 32 1 2.1371 -9.8077 0.2801 33 1 1.0113 -8.2730 1.6338 34 1 -0.2245 -8.3599 0.3411 35 1 0.8284 -5.9633 0.9741 36 1 0.6287 -6.3884 -0.7578 37 1 0.0308 -1.6247 1.6468 38 1 1.4927 -4.3744 2.0202 39 1 0.5258 -3.4764 3.3088 40 1 -1.5422 -3.6047 1.8456 41 1 -0.5753 -4.5022 0.5570 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345976541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:43 Heat of formation + Delta-G solvation = -112.865448 kcal Electronic energy + Delta-G solvation = -23500.725687 eV Core-core repulsion = 20153.182991 eV Total energy + Delta-G solvation = -3347.542695 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.90236 -39.02516 -36.69162 -35.78893 -34.65589 -32.80094 -31.21418 -29.61130 -27.84243 -26.63272 -24.01941 -22.97821 -21.57853 -21.16610 -20.19559 -20.01582 -18.95118 -17.18091 -16.95522 -16.70492 -15.78854 -15.50639 -14.91283 -14.77110 -14.48301 -14.34227 -14.08510 -13.71313 -13.47952 -12.76133 -12.36646 -12.15994 -11.63101 -11.41042 -11.24362 -11.20310 -11.11791 -11.04050 -10.92522 -10.82758 -10.75229 -10.56900 -10.53874 -10.30578 -10.19642 -9.82325 -9.54411 -9.29166 -9.11686 -8.51881 -8.42765 -6.16219 -4.23242 2.95603 3.21569 3.27061 3.32855 3.37726 4.01902 4.12696 4.34108 4.46570 4.75171 4.87564 4.97942 5.05913 5.15424 5.15695 5.23879 5.32417 5.38582 5.51053 5.62995 5.66458 5.72679 5.76135 5.79743 5.88213 5.96970 6.02741 6.06353 6.12159 6.21354 6.33623 6.38652 6.62538 6.92139 6.93785 7.04067 7.13834 7.55233 7.67154 7.86156 8.11901 8.63271 8.89778 9.41447 10.90657 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.026223 B = 0.005421 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.492077 B = 5163.542362 C = 5794.033038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.525 4.525 8 H 0.067 0.933 9 C 0.239 3.761 10 H 0.061 0.939 11 O -0.351 6.351 12 C 0.454 3.546 13 O -0.500 6.500 14 C 0.095 3.905 15 H 0.102 0.898 16 O -0.351 6.351 17 C 0.057 3.943 18 C -0.124 4.124 19 H 0.096 0.904 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.138 4.138 23 C -0.105 4.105 24 H 0.112 0.888 25 C -0.103 4.103 26 C -0.191 4.191 27 C -0.204 4.204 28 H 0.266 0.734 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.100 -16.355 2.645 17.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.563 4.563 8 H 0.086 0.914 9 C 0.187 3.813 10 H 0.079 0.921 11 O -0.268 6.268 12 C 0.295 3.705 13 O -0.388 6.388 14 C 0.036 3.964 15 H 0.119 0.881 16 O -0.270 6.270 17 C -0.020 4.020 18 C -0.143 4.143 19 H 0.114 0.886 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.175 4.175 23 C -0.124 4.124 24 H 0.130 0.870 25 C -0.122 4.122 26 C -0.228 4.228 27 C -0.241 4.241 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.146 0.854 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.658 -16.022 2.188 16.580 hybrid contribution 0.292 0.857 0.105 0.911 sum 3.950 -15.166 2.294 15.839 Atomic orbital electron populations 1.69982 1.05869 1.27241 1.49163 1.24896 0.95021 0.99245 0.94596 0.86366 0.79718 0.82284 0.78343 1.20411 1.20966 1.19608 1.21132 0.93858 0.89029 1.52272 0.91444 1.20189 0.86122 0.80425 0.94563 0.92146 1.86415 1.58863 1.38017 1.43500 1.23061 0.82644 0.83569 0.81233 1.90612 1.37277 1.73271 1.37614 1.22025 0.98632 0.90926 0.84862 0.88062 1.88251 1.94755 1.17611 1.26384 1.23278 1.01773 0.81731 0.95177 1.23152 1.00004 0.96023 0.95074 0.88608 1.22235 0.95156 0.97628 1.00294 1.22330 0.99225 0.94556 0.99630 1.22843 0.93736 0.97514 1.03392 1.23238 0.98402 0.92251 0.98504 0.87027 1.22877 0.98075 0.93441 0.97798 1.22836 0.98971 1.05143 0.95859 1.22928 0.94079 1.04352 1.02774 0.92463 0.90978 0.91289 0.91256 0.91553 0.91370 0.91422 0.89426 0.90468 0.85357 0.89125 0.90435 0.90195 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.02 11.68 55.43 0.65 -24.37 16 2 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 3 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -14.71 8.90 -34.44 -0.31 -15.01 16 8 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.24 6.28 2.61 -27.89 -0.07 6.20 16 10 H 0.06 1.80 6.58 -51.92 -0.34 1.46 16 11 O -0.35 -8.09 8.21 -39.26 -0.32 -8.41 16 12 C 0.45 9.79 5.48 36.00 0.20 9.99 16 13 O -0.50 -12.62 15.19 -25.39 -0.39 -13.01 16 14 C 0.09 1.55 3.78 -27.47 -0.10 1.45 16 15 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 16 O -0.35 -5.93 10.49 -54.86 -0.58 -6.50 16 17 C 0.06 0.68 7.31 37.60 0.27 0.96 16 18 C -0.12 -1.26 3.99 -88.44 -0.35 -1.62 16 19 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 20 C -0.12 -1.05 6.38 -25.63 -0.16 -1.22 16 21 C -0.12 -1.27 6.82 -25.11 -0.17 -1.44 16 22 C -0.14 -1.94 4.88 -24.90 -0.12 -2.06 16 23 C -0.11 -1.36 3.80 -88.09 -0.33 -1.69 16 24 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 25 C -0.10 -2.45 5.23 -90.62 -0.47 -2.93 16 26 C -0.19 -3.70 9.36 -26.74 -0.25 -3.95 16 27 C -0.20 -4.12 9.76 -26.73 -0.26 -4.38 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.07 0.84 7.01 -51.93 -0.36 0.47 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.61 7.03 -51.93 -0.37 0.24 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.34 4.88 -51.93 -0.25 1.09 16 36 H 0.08 1.31 7.03 -51.93 -0.36 0.95 16 37 H 0.13 3.35 6.56 -51.93 -0.34 3.01 16 38 H 0.09 1.69 5.89 -51.93 -0.31 1.38 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.08 1.61 7.03 -51.93 -0.37 1.24 16 LS Contribution 321.26 15.07 4.84 4.84 Total: -1.00 -31.08 321.26 -9.10 -40.18 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.05 Total: 5.13 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -2.23 Total: -14.02 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.65 Total: -24.37 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -1.28 Total: -27.92 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.08 -9.10 -40.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345976541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.684 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds