Wall clock time and date at job start Tue Mar 31 2020 01:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00086 * 2 1 4 4 H 1.48503 * 109.47317 * 270.00628 * 3 2 1 5 5 H 1.48510 * 109.47054 * 30.00276 * 3 2 1 6 6 H 1.48499 * 109.47257 * 150.00314 * 3 2 1 7 7 C 1.37876 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99746 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00200 * 359.97438 * 7 2 1 10 10 H 1.09009 * 109.47114 * 59.99233 * 9 7 2 11 11 O 1.45195 * 109.47418 * 179.97438 * 9 7 2 12 12 C 1.34232 * 117.00541 * 240.02084 * 11 9 7 13 13 O 1.20826 * 119.99648 * 1.99715 * 12 11 9 14 14 C 1.50693 * 120.00304 * 181.98910 * 12 11 9 15 15 H 1.09003 * 109.88564 * 307.99470 * 14 12 11 16 16 O 1.42892 * 109.89246 * 186.95417 * 14 12 11 17 17 C 1.42760 * 110.69421 * 222.63167 * 16 14 12 18 18 C 1.53844 * 108.46102 * 2.02305 * 17 16 14 19 19 H 1.08994 * 112.35673 * 252.48156 * 18 17 16 20 20 C 1.53906 * 108.84180 * 126.89175 * 18 17 16 21 21 C 1.54201 * 106.80668 * 249.22935 * 20 18 17 22 22 C 1.54875 * 104.21531 * 23.51198 * 21 20 18 23 23 C 1.53795 * 110.02319 * 69.11080 * 14 12 11 24 24 H 1.08997 * 112.89442 * 267.64705 * 23 14 12 25 25 C 1.52998 * 109.47286 * 299.99939 * 9 7 2 26 26 C 1.52993 * 117.50316 * 242.91659 * 25 9 7 27 27 C 1.52998 * 60.00269 * 252.50673 * 26 25 9 28 28 H 0.97000 * 119.99592 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.68306 * 121.79601 * 17 16 14 30 30 H 1.09002 * 109.68850 * 242.32238 * 17 16 14 31 31 H 1.08994 * 109.99574 * 8.56950 * 20 18 17 32 32 H 1.09003 * 109.98442 * 129.89780 * 20 18 17 33 33 H 1.09000 * 110.48039 * 264.83090 * 21 20 18 34 34 H 1.08993 * 110.58882 * 142.25112 * 21 20 18 35 35 H 1.08997 * 110.74740 * 203.46121 * 22 21 20 36 36 H 1.09003 * 110.74657 * 80.11882 * 22 21 20 37 37 H 1.09003 * 115.54698 * 28.62499 * 25 9 7 38 38 H 1.09002 * 117.49584 * 359.97438 * 26 25 9 39 39 H 1.08999 * 117.50041 * 145.01056 * 26 25 9 40 40 H 1.08996 * 117.49590 * 252.50690 * 27 26 25 41 41 H 1.09000 * 117.51773 * 107.47886 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6240 -2.5566 -0.8903 11 8 2.1946 -3.6027 -0.0018 12 6 2.1357 -4.4539 -1.0380 13 8 1.3470 -4.2622 -1.9331 14 6 3.0532 -5.6484 -1.0852 15 1 4.0851 -5.3293 -0.9383 16 8 2.9239 -6.3113 -2.3444 17 6 2.8887 -7.7275 -2.1677 18 6 2.9528 -8.0322 -0.6611 19 1 3.9177 -8.4413 -0.3615 20 6 1.7757 -8.9513 -0.2892 21 6 0.8113 -8.1133 0.5742 22 6 1.1219 -6.6485 0.1789 23 6 2.6581 -6.6593 0.0044 24 1 3.2013 -6.5108 0.9376 25 6 0.3720 -2.5805 1.2490 26 6 0.6703 -3.6973 2.2512 27 6 -0.5770 -3.7747 1.3687 28 1 -0.4849 0.8401 0.0004 29 1 1.9636 -8.1266 -2.5839 30 1 3.7430 -8.1816 -2.6697 31 1 1.2682 -9.2907 -1.1921 32 1 2.1371 -9.8077 0.2801 33 1 1.0113 -8.2730 1.6338 34 1 -0.2245 -8.3599 0.3411 35 1 0.8284 -5.9633 0.9741 36 1 0.6287 -6.3884 -0.7578 37 1 0.0308 -1.6247 1.6468 38 1 1.4927 -4.3744 2.0202 39 1 0.5258 -3.4764 3.3088 40 1 -1.5422 -3.6047 1.8456 41 1 -0.5753 -4.5022 0.5570 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345976541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:43 Heat of formation + Delta-G solvation = -130.402365 kcal Electronic energy + Delta-G solvation = -23501.486145 eV Core-core repulsion = 20153.182991 eV Total energy + Delta-G solvation = -3348.303153 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.19928 -40.60505 -38.43070 -36.91103 -36.46445 -34.88338 -32.37463 -30.58159 -29.79809 -27.72372 -25.71621 -24.51533 -23.18568 -22.31376 -21.72553 -20.93769 -20.72488 -18.93649 -18.57859 -18.06927 -17.41229 -17.11110 -16.50790 -16.17981 -15.91005 -15.46889 -15.32708 -15.27812 -14.81061 -14.26903 -13.89356 -13.59730 -13.12003 -13.07109 -12.88159 -12.75281 -12.54082 -12.32458 -12.25258 -12.14012 -12.09865 -12.01779 -11.82399 -11.78000 -11.44928 -11.34066 -11.23961 -11.10173 -10.54574 -10.47757 -10.35992 -8.27249 -6.43749 1.27867 1.39159 1.40302 1.51448 1.71243 2.36632 2.89280 3.01082 3.13993 3.17846 3.53345 3.65599 3.92232 4.02862 4.08001 4.10213 4.24589 4.29043 4.33510 4.37302 4.44741 4.50986 4.61101 4.67661 4.76980 4.81693 4.85439 4.97353 5.00032 5.07899 5.16499 5.22965 5.25682 5.29159 5.33243 5.45266 5.55411 5.60118 5.89662 5.91412 6.06561 6.60191 6.96231 7.26617 8.79628 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.026223 B = 0.005421 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.492077 B = 5163.542362 C = 5794.033038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.020 3.980 3 Si 0.974 3.026 4 H -0.277 1.277 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.555 4.555 8 H 0.062 0.938 9 C 0.247 3.753 10 H 0.008 0.992 11 O -0.348 6.348 12 C 0.448 3.552 13 O -0.548 6.548 14 C 0.098 3.902 15 H 0.124 0.876 16 O -0.385 6.385 17 C 0.045 3.955 18 C -0.108 4.108 19 H 0.131 0.869 20 C -0.112 4.112 21 C -0.114 4.114 22 C -0.143 4.143 23 C -0.103 4.103 24 H 0.137 0.863 25 C -0.140 4.140 26 C -0.155 4.155 27 C -0.190 4.190 28 H 0.269 0.731 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.035 0.965 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.869 -18.446 4.483 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.203 1.203 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.592 4.592 8 H 0.080 0.920 9 C 0.194 3.806 10 H 0.026 0.974 11 O -0.264 6.264 12 C 0.292 3.708 13 O -0.439 6.439 14 C 0.039 3.961 15 H 0.141 0.859 16 O -0.304 6.304 17 C -0.031 4.031 18 C -0.127 4.127 19 H 0.149 0.851 20 C -0.149 4.149 21 C -0.152 4.152 22 C -0.180 4.180 23 C -0.121 4.121 24 H 0.155 0.845 25 C -0.159 4.159 26 C -0.192 4.192 27 C -0.227 4.227 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.437 -18.145 4.035 19.367 hybrid contribution -0.314 1.474 -0.559 1.608 sum 5.122 -16.671 3.476 17.783 Atomic orbital electron populations 1.70108 1.07318 1.28231 1.49229 1.25764 0.95891 1.02651 0.93737 0.85327 0.78792 0.77800 0.78382 1.20301 1.19785 1.18551 1.21439 0.93796 0.90579 1.53397 0.92025 1.19759 0.86102 0.81074 0.93699 0.97409 1.86398 1.58077 1.37668 1.44293 1.24342 0.82557 0.84143 0.79741 1.90581 1.39622 1.74494 1.39199 1.22231 0.97838 0.89574 0.86447 0.85862 1.88223 1.94800 1.20394 1.27023 1.23624 1.02913 0.79269 0.97279 1.23208 1.02181 0.94389 0.92885 0.85071 1.22254 0.94253 0.97940 1.00464 1.22334 0.99794 0.92000 1.01049 1.22770 0.94708 0.99788 1.00759 1.23392 0.97480 0.92757 0.98480 0.84510 1.22497 1.00692 0.93932 0.98773 1.22921 0.98301 1.01648 0.96301 1.22911 0.95205 1.01770 1.02841 0.92212 0.91350 0.88577 0.91214 0.88532 0.89502 0.91592 0.91071 0.94574 0.88016 0.88130 0.87710 0.88419 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.49 11.68 21.45 0.25 -53.24 16 2 C 0.02 1.12 5.15 84.65 0.44 1.56 16 3 Si 0.97 44.10 29.54 68.60 2.03 46.12 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.55 -32.35 8.90 25.60 0.23 -32.13 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.52 16 9 C 0.25 13.66 2.61 29.85 0.08 13.74 16 10 H 0.01 0.53 6.58 -2.38 -0.02 0.51 16 11 O -0.35 -16.62 8.21 -51.43 -0.42 -17.04 16 12 C 0.45 20.20 5.48 71.23 0.39 20.59 16 13 O -0.55 -29.78 15.19 28.31 0.43 -29.35 16 14 C 0.10 3.17 3.78 30.11 0.11 3.29 16 15 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 16 O -0.38 -12.95 10.49 -130.21 -1.37 -14.31 16 17 C 0.04 0.98 7.31 72.27 0.53 1.50 16 18 C -0.11 -1.80 3.99 -9.38 -0.04 -1.83 16 19 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 20 C -0.11 -1.61 6.38 31.31 0.20 -1.41 16 21 C -0.11 -2.14 6.82 31.64 0.22 -1.92 16 22 C -0.14 -3.95 4.88 31.78 0.15 -3.79 16 23 C -0.10 -2.42 3.80 -9.16 -0.03 -2.45 16 24 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 25 C -0.14 -6.88 5.23 -10.80 -0.06 -6.94 16 26 C -0.16 -5.85 9.36 30.59 0.29 -5.56 16 27 C -0.19 -7.77 9.76 30.59 0.30 -7.47 16 28 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 29 H 0.07 1.52 7.01 -2.39 -0.02 1.50 16 30 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.02 7.03 -2.39 -0.02 1.01 16 32 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 2.15 4.88 -2.39 -0.01 2.14 16 36 H 0.04 1.28 7.03 -2.39 -0.02 1.26 16 37 H 0.10 5.54 6.56 -2.39 -0.02 5.52 16 38 H 0.10 3.59 5.89 -2.39 -0.01 3.58 16 39 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 40 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 41 H 0.07 3.00 7.03 -2.39 -0.02 2.98 16 Total: -1.00 -73.57 321.26 4.75 -68.82 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 1.03 Total: 21.82 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 2.80 Total: -22.83 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.25 Total: -53.24 kcal Atomic # 8 Polarization: -59.34 SS G_CDS: -1.36 Total: -60.70 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -73.57 4.75 -68.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345976541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.579 kcal (2) G-P(sol) polarization free energy of solvation -73.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds