Wall clock time and date at job start Tue Mar 31 2020 01:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47281 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47068 * 300.00086 * 3 2 1 6 6 H 1.48501 * 109.47168 * 60.00247 * 3 2 1 7 7 C 1.37884 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00041 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99623 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.46902 * 299.99756 * 9 7 2 11 11 O 1.45196 * 109.46838 * 180.02562 * 9 7 2 12 12 C 1.34234 * 116.99938 * 149.99799 * 11 9 7 13 13 O 1.20822 * 119.99973 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00068 * 179.97438 * 12 11 9 15 15 H 1.09005 * 109.87550 * 304.30070 * 14 12 11 16 16 O 1.42892 * 109.88993 * 183.26863 * 14 12 11 17 17 C 1.42763 * 110.68646 * 222.79570 * 16 14 12 18 18 C 1.53844 * 108.46420 * 2.01476 * 17 16 14 19 19 H 1.08994 * 112.35811 * 251.91286 * 18 17 16 20 20 C 1.53909 * 108.84174 * 126.89650 * 18 17 16 21 21 C 1.54200 * 106.80526 * 249.22953 * 20 18 17 22 22 C 1.54884 * 104.21613 * 23.51234 * 21 20 18 23 23 C 1.53790 * 109.88991 * 65.33008 * 14 12 11 24 24 H 1.08996 * 112.89605 * 267.57037 * 23 14 12 25 25 C 1.52994 * 109.47091 * 59.99823 * 9 7 2 26 26 C 1.52994 * 117.50021 * 248.74469 * 25 9 7 27 27 C 1.53004 * 117.49708 * 180.08498 * 25 9 7 28 28 H 0.96998 * 119.99390 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.68479 * 121.79579 * 17 16 14 30 30 H 1.09005 * 109.68277 * 242.23228 * 17 16 14 31 31 H 1.09003 * 109.98900 * 8.56624 * 20 18 17 32 32 H 1.09000 * 109.98946 * 129.89253 * 20 18 17 33 33 H 1.09002 * 110.48052 * 142.19383 * 21 20 18 34 34 H 1.08998 * 110.48475 * 264.69830 * 21 20 18 35 35 H 1.09005 * 110.74685 * 80.12063 * 22 21 20 36 36 H 1.08998 * 110.74632 * 203.46259 * 22 21 20 37 37 H 1.09002 * 115.55238 * 34.41999 * 25 9 7 38 38 H 1.09003 * 117.50041 * 0.02562 * 26 25 9 39 39 H 1.09001 * 117.50068 * 145.02380 * 26 25 9 40 40 H 1.09004 * 117.50146 * 214.98158 * 27 25 9 41 41 H 1.09000 * 117.49877 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 2.1945 -3.6028 -0.0005 12 6 1.8032 -4.7391 0.5975 13 8 0.7084 -4.8093 1.1038 14 6 2.7290 -5.9276 0.6365 15 1 3.0338 -6.1932 -0.3758 16 8 2.0712 -7.0363 1.2528 17 6 2.9513 -7.7072 2.1546 18 6 4.2932 -6.9549 2.1760 19 1 5.0857 -7.5063 1.6700 20 6 4.6531 -6.6218 3.6348 21 6 4.5265 -5.0926 3.7872 22 6 3.5500 -4.6775 2.6590 23 6 3.9677 -5.5983 1.4864 24 1 4.7955 -5.2065 0.8955 25 6 0.3709 -2.5799 -1.2494 26 6 -1.1447 -2.5123 -1.0512 27 6 -0.4808 -3.8376 -1.4333 28 1 -0.4849 0.8401 0.0004 29 1 2.5178 -7.7131 3.1546 30 1 3.1101 -8.7319 1.8185 31 1 3.9619 -7.1225 4.3128 32 1 5.6757 -6.9341 3.8469 33 1 4.1117 -4.8396 4.7630 34 1 5.4962 -4.6141 3.6503 35 1 2.5176 -4.8676 2.9525 36 1 3.6903 -3.6298 2.3931 37 1 0.7825 -2.1154 -2.1454 38 1 -1.5148 -2.4099 -0.0310 39 1 -1.7302 -2.0036 -1.8169 40 1 -0.6299 -4.2002 -2.4504 41 1 -0.4138 -4.6077 -0.6648 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345976542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:46 Heat of formation + Delta-G solvation = -113.327975 kcal Electronic energy + Delta-G solvation = -23308.581223 eV Core-core repulsion = 19961.018471 eV Total energy + Delta-G solvation = -3347.562752 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.84168 -39.04116 -36.34724 -35.79141 -34.78230 -32.64098 -31.15708 -29.57524 -27.88254 -26.53711 -23.94012 -22.87249 -21.28195 -21.12423 -20.05595 -20.00193 -19.05329 -17.12487 -17.07341 -16.39173 -15.80342 -15.43991 -15.01831 -14.61685 -14.47420 -14.34819 -14.00697 -13.69195 -13.12349 -12.63135 -12.53765 -12.07596 -11.64924 -11.42228 -11.25354 -11.13805 -11.10248 -11.04677 -10.93209 -10.79850 -10.74767 -10.53397 -10.36933 -10.26455 -9.81953 -9.77990 -9.38908 -9.16085 -8.96921 -8.62002 -8.41615 -6.14568 -4.22478 2.97596 3.21140 3.23792 3.32008 3.38181 4.04304 4.16953 4.33416 4.50281 4.78587 5.01222 5.04971 5.09903 5.17016 5.20053 5.30945 5.37048 5.44929 5.55439 5.68487 5.70092 5.78294 5.80497 5.92265 5.99319 6.02336 6.16486 6.19861 6.34060 6.40035 6.42023 6.60864 6.70078 7.02390 7.05281 7.20174 7.30089 7.43313 7.64433 7.87572 8.13478 8.67829 8.91875 9.42125 10.92213 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019849 B = 0.005851 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.286276 B = 4784.742750 C = 5842.610227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.068 3.932 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.069 0.931 9 C 0.250 3.750 10 H 0.047 0.953 11 O -0.350 6.350 12 C 0.455 3.545 13 O -0.502 6.502 14 C 0.094 3.906 15 H 0.101 0.899 16 O -0.352 6.352 17 C 0.057 3.943 18 C -0.125 4.125 19 H 0.095 0.905 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.130 4.130 23 C -0.104 4.104 24 H 0.113 0.887 25 C -0.116 4.116 26 C -0.123 4.123 27 C -0.230 4.230 28 H 0.263 0.737 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.773 -11.925 3.799 15.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.136 4.136 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.563 4.563 8 H 0.087 0.913 9 C 0.198 3.802 10 H 0.065 0.935 11 O -0.266 6.266 12 C 0.296 3.704 13 O -0.391 6.391 14 C 0.035 3.965 15 H 0.119 0.881 16 O -0.270 6.270 17 C -0.019 4.019 18 C -0.144 4.144 19 H 0.113 0.887 20 C -0.154 4.154 21 C -0.158 4.158 22 C -0.167 4.167 23 C -0.122 4.122 24 H 0.131 0.869 25 C -0.135 4.135 26 C -0.160 4.160 27 C -0.267 4.267 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.045 -11.830 3.911 14.831 hybrid contribution 0.343 0.999 -0.112 1.062 sum 8.388 -10.831 3.799 14.216 Atomic orbital electron populations 1.70064 1.05748 1.26852 1.48149 1.24884 0.95011 0.99043 0.94630 0.86328 0.80006 0.82755 0.77676 1.19544 1.20825 1.20848 1.20929 0.93785 0.88309 1.53320 0.91266 1.20204 0.86134 0.80324 0.93559 0.93488 1.86467 1.49230 1.21751 1.69160 1.23066 0.86529 0.84974 0.75814 1.90586 1.22260 1.83088 1.43144 1.22031 0.90440 0.85194 0.98844 0.88137 1.88243 1.38001 1.41474 1.59309 1.23273 0.88764 0.95728 0.94174 1.23199 0.97938 0.95898 0.97318 0.88685 1.22249 1.01520 0.96933 0.94664 1.22343 0.99665 0.94850 0.98975 1.22704 0.99916 1.00351 0.93767 1.23310 0.96489 0.95956 0.96488 0.86893 1.22604 0.92938 0.97460 1.00491 1.22359 0.95530 0.96769 1.01383 1.23298 1.09420 0.93040 1.00924 0.92693 0.91009 0.91342 0.91308 0.91593 0.91443 0.91335 0.90575 0.89715 0.89346 0.89364 0.90802 0.91030 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.16 11.43 55.43 0.63 -23.53 16 2 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 3 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.37 8.88 -34.43 -0.31 -14.68 16 8 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.25 6.56 2.25 -27.88 -0.06 6.50 16 10 H 0.05 1.38 6.91 -51.93 -0.36 1.02 16 11 O -0.35 -8.14 9.85 -39.27 -0.39 -8.53 16 12 C 0.45 9.63 4.61 36.01 0.17 9.80 16 13 O -0.50 -12.17 13.41 -25.40 -0.34 -12.51 16 14 C 0.09 1.53 3.78 -27.47 -0.10 1.43 16 15 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 16 O -0.35 -5.84 10.48 -54.94 -0.58 -6.41 16 17 C 0.06 0.68 7.31 37.60 0.27 0.96 16 18 C -0.12 -1.31 3.98 -88.31 -0.35 -1.66 16 19 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 20 C -0.12 -1.11 6.38 -25.63 -0.16 -1.27 16 21 C -0.12 -1.36 6.82 -25.11 -0.17 -1.53 16 22 C -0.13 -1.94 5.09 -24.77 -0.13 -2.07 16 23 C -0.10 -1.39 3.84 -87.85 -0.34 -1.72 16 24 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 25 C -0.12 -2.88 4.47 -90.62 -0.41 -3.29 16 26 C -0.12 -2.91 9.04 -26.70 -0.24 -3.15 16 27 C -0.23 -5.14 9.80 -26.69 -0.26 -5.41 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.07 0.84 7.01 -51.93 -0.36 0.47 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.63 7.03 -51.93 -0.37 0.26 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.33 7.13 -51.93 -0.37 0.96 16 36 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.09 2.25 8.11 -51.93 -0.42 1.83 16 38 H 0.09 2.23 8.05 -51.93 -0.42 1.81 16 39 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.09 2.22 5.37 -51.93 -0.28 1.94 16 LS Contribution 324.74 15.07 4.89 4.89 Total: -1.00 -30.32 324.74 -9.33 -39.65 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.35 Total: 5.04 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -2.18 Total: -14.34 kcal Atomic # 7 Polarization: -24.16 SS G_CDS: 0.63 Total: -23.53 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -1.30 Total: -27.44 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.32 -9.33 -39.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345976542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.679 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds