Wall clock time and date at job start Tue Mar 31 2020 01:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47281 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47068 * 300.00086 * 3 2 1 6 6 H 1.48501 * 109.47168 * 60.00247 * 3 2 1 7 7 C 1.37884 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00041 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99623 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.46902 * 299.99756 * 9 7 2 11 11 O 1.45196 * 109.46838 * 180.02562 * 9 7 2 12 12 C 1.34234 * 116.99938 * 149.99799 * 11 9 7 13 13 O 1.20822 * 119.99973 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00068 * 179.97438 * 12 11 9 15 15 H 1.09005 * 109.87550 * 304.30070 * 14 12 11 16 16 O 1.42892 * 109.88993 * 183.26863 * 14 12 11 17 17 C 1.42763 * 110.68646 * 222.79570 * 16 14 12 18 18 C 1.53844 * 108.46420 * 2.01476 * 17 16 14 19 19 H 1.08994 * 112.35811 * 251.91286 * 18 17 16 20 20 C 1.53909 * 108.84174 * 126.89650 * 18 17 16 21 21 C 1.54200 * 106.80526 * 249.22953 * 20 18 17 22 22 C 1.54884 * 104.21613 * 23.51234 * 21 20 18 23 23 C 1.53790 * 109.88991 * 65.33008 * 14 12 11 24 24 H 1.08996 * 112.89605 * 267.57037 * 23 14 12 25 25 C 1.52994 * 109.47091 * 59.99823 * 9 7 2 26 26 C 1.52994 * 117.50021 * 248.74469 * 25 9 7 27 27 C 1.53004 * 117.49708 * 180.08498 * 25 9 7 28 28 H 0.96998 * 119.99390 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.68479 * 121.79579 * 17 16 14 30 30 H 1.09005 * 109.68277 * 242.23228 * 17 16 14 31 31 H 1.09003 * 109.98900 * 8.56624 * 20 18 17 32 32 H 1.09000 * 109.98946 * 129.89253 * 20 18 17 33 33 H 1.09002 * 110.48052 * 142.19383 * 21 20 18 34 34 H 1.08998 * 110.48475 * 264.69830 * 21 20 18 35 35 H 1.09005 * 110.74685 * 80.12063 * 22 21 20 36 36 H 1.08998 * 110.74632 * 203.46259 * 22 21 20 37 37 H 1.09002 * 115.55238 * 34.41999 * 25 9 7 38 38 H 1.09003 * 117.50041 * 0.02562 * 26 25 9 39 39 H 1.09001 * 117.50068 * 145.02380 * 26 25 9 40 40 H 1.09004 * 117.50146 * 214.98158 * 27 25 9 41 41 H 1.09000 * 117.49877 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 2.1945 -3.6028 -0.0005 12 6 1.8032 -4.7391 0.5975 13 8 0.7084 -4.8093 1.1038 14 6 2.7290 -5.9276 0.6365 15 1 3.0338 -6.1932 -0.3758 16 8 2.0712 -7.0363 1.2528 17 6 2.9513 -7.7072 2.1546 18 6 4.2932 -6.9549 2.1760 19 1 5.0857 -7.5063 1.6700 20 6 4.6531 -6.6218 3.6348 21 6 4.5265 -5.0926 3.7872 22 6 3.5500 -4.6775 2.6590 23 6 3.9677 -5.5983 1.4864 24 1 4.7955 -5.2065 0.8955 25 6 0.3709 -2.5799 -1.2494 26 6 -1.1447 -2.5123 -1.0512 27 6 -0.4808 -3.8376 -1.4333 28 1 -0.4849 0.8401 0.0004 29 1 2.5178 -7.7131 3.1546 30 1 3.1101 -8.7319 1.8185 31 1 3.9619 -7.1225 4.3128 32 1 5.6757 -6.9341 3.8469 33 1 4.1117 -4.8396 4.7630 34 1 5.4962 -4.6141 3.6503 35 1 2.5176 -4.8676 2.9525 36 1 3.6903 -3.6298 2.3931 37 1 0.7825 -2.1154 -2.1454 38 1 -1.5148 -2.4099 -0.0310 39 1 -1.7302 -2.0036 -1.8169 40 1 -0.6299 -4.2002 -2.4504 41 1 -0.4138 -4.6077 -0.6648 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345976542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:45 Heat of formation + Delta-G solvation = -129.695786 kcal Electronic energy + Delta-G solvation = -23309.290984 eV Core-core repulsion = 19961.018471 eV Total energy + Delta-G solvation = -3348.272514 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.15402 -40.63583 -38.16963 -37.02327 -36.57769 -34.71950 -32.32727 -30.60524 -29.83168 -27.67870 -25.59662 -24.48200 -23.12132 -22.39607 -21.65337 -20.96514 -20.86250 -18.94130 -18.45107 -18.01001 -17.36410 -17.08935 -16.51422 -16.25239 -15.86102 -15.50620 -15.37536 -15.12006 -14.61986 -14.37708 -13.93457 -13.57493 -13.27826 -13.04159 -12.97326 -12.81228 -12.54881 -12.28882 -12.18358 -12.12713 -12.02545 -11.87265 -11.80831 -11.77334 -11.44998 -11.39403 -11.13604 -10.97678 -10.62621 -10.50825 -10.41913 -8.22025 -6.39106 1.31462 1.41668 1.42200 1.54425 1.73324 2.39710 2.89607 3.05096 3.12122 3.22012 3.54670 3.66504 3.95724 4.03519 4.07026 4.10309 4.25721 4.27467 4.35138 4.41731 4.44971 4.50499 4.61274 4.65829 4.69653 4.77248 4.82950 4.93811 5.03563 5.07985 5.13784 5.20297 5.22966 5.27612 5.35930 5.43228 5.45910 5.55491 5.84206 5.92241 6.13044 6.65171 7.01354 7.30823 8.84714 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019849 B = 0.005851 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.286276 B = 4784.742750 C = 5842.610227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.550 4.550 8 H 0.066 0.934 9 C 0.257 3.743 10 H 0.001 0.999 11 O -0.353 6.353 12 C 0.449 3.551 13 O -0.541 6.541 14 C 0.098 3.902 15 H 0.127 0.873 16 O -0.381 6.381 17 C 0.046 3.954 18 C -0.109 4.109 19 H 0.132 0.868 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.136 4.136 23 C -0.103 4.103 24 H 0.134 0.866 25 C -0.131 4.131 26 C -0.122 4.122 27 C -0.203 4.203 28 H 0.267 0.733 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.037 0.963 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.232 -13.141 3.307 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.178 4.178 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.588 4.588 8 H 0.085 0.915 9 C 0.204 3.796 10 H 0.019 0.981 11 O -0.270 6.270 12 C 0.293 3.707 13 O -0.432 6.432 14 C 0.039 3.961 15 H 0.145 0.855 16 O -0.300 6.300 17 C -0.030 4.030 18 C -0.127 4.127 19 H 0.150 0.850 20 C -0.149 4.149 21 C -0.153 4.153 22 C -0.174 4.174 23 C -0.121 4.121 24 H 0.152 0.848 25 C -0.150 4.150 26 C -0.159 4.159 27 C -0.240 4.240 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.516 -13.073 3.425 17.124 hybrid contribution -0.488 1.337 0.114 1.428 sum 10.028 -11.736 3.539 15.837 Atomic orbital electron populations 1.70184 1.07121 1.27870 1.48122 1.25747 0.95923 1.02376 0.93774 0.85259 0.78927 0.78082 0.77871 1.18756 1.19936 1.20443 1.21181 0.93817 0.89389 1.54400 0.91534 1.19822 0.86174 0.81305 0.92324 0.98108 1.86452 1.48600 1.22164 1.69765 1.24251 0.86931 0.85340 0.74139 1.90557 1.24354 1.83631 1.44635 1.22210 0.89843 0.83060 1.00963 0.85548 1.88217 1.40173 1.41375 1.60276 1.23613 0.88991 0.96955 0.93431 1.23247 0.97964 0.93722 0.97768 0.84984 1.22266 1.03506 0.94975 0.94120 1.22347 0.99032 0.96747 0.97215 1.22625 0.98953 0.99142 0.96646 1.23437 0.95541 0.97523 0.95643 0.84847 1.22460 0.93298 0.99673 0.99606 1.22275 0.94976 0.98161 1.00525 1.23266 1.06809 0.91710 1.02202 0.92435 0.91349 0.88349 0.90978 0.88499 0.91609 0.89808 0.94373 0.92846 0.89809 0.91952 0.89028 0.87655 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.99 11.43 21.45 0.25 -50.75 16 2 C 0.02 1.30 5.30 84.66 0.45 1.75 16 3 Si 0.97 42.87 29.54 68.60 2.03 44.90 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.55 -31.16 8.88 25.60 0.23 -30.94 16 8 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 9 C 0.26 14.18 2.25 29.85 0.07 14.24 16 10 H 0.00 0.07 6.91 -2.39 -0.02 0.06 16 11 O -0.35 -17.19 9.85 -51.46 -0.51 -17.69 16 12 C 0.45 19.87 4.61 71.24 0.33 20.19 16 13 O -0.54 -27.93 13.41 28.34 0.38 -27.55 16 14 C 0.10 3.15 3.78 30.11 0.11 3.26 16 15 H 0.13 3.41 8.14 -2.38 -0.02 3.39 16 16 O -0.38 -12.43 10.48 -130.14 -1.36 -13.79 16 17 C 0.05 0.99 7.31 72.27 0.53 1.51 16 18 C -0.11 -1.88 3.98 -9.30 -0.04 -1.92 16 19 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 20 C -0.11 -1.74 6.38 31.31 0.20 -1.54 16 21 C -0.12 -2.46 6.82 31.64 0.22 -2.24 16 22 C -0.14 -4.19 5.09 31.86 0.16 -4.02 16 23 C -0.10 -2.60 3.84 -9.00 -0.03 -2.63 16 24 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 25 C -0.13 -6.72 4.47 -10.80 -0.05 -6.77 16 26 C -0.12 -5.92 9.04 30.62 0.28 -5.65 16 27 C -0.20 -9.14 9.80 30.62 0.30 -8.84 16 28 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 29 H 0.07 1.50 7.01 -2.39 -0.02 1.48 16 30 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.07 1.11 7.03 -2.39 -0.02 1.09 16 32 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.04 1.44 7.13 -2.38 -0.02 1.42 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 4.33 8.11 -2.39 -0.02 4.31 16 38 H 0.06 3.33 8.05 -2.39 -0.02 3.31 16 39 H 0.09 4.06 8.14 -2.39 -0.02 4.04 16 40 H 0.11 4.02 8.14 -2.38 -0.02 4.00 16 41 H 0.08 3.88 5.37 -2.39 -0.01 3.87 16 Total: -1.00 -70.09 324.74 4.54 -65.54 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 1.01 Total: 22.92 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 2.75 Total: -23.59 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.25 Total: -50.75 kcal Atomic # 8 Polarization: -57.54 SS G_CDS: -1.49 Total: -59.03 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -70.09 4.54 -65.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345976542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.151 kcal (2) G-P(sol) polarization free energy of solvation -70.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds