Wall clock time and date at job start Tue Mar 31 2020 01:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46997 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47146 * 54.99480 * 5 4 3 7 7 C 1.53005 * 109.46836 * 295.00188 * 5 4 3 8 8 C 1.50697 * 109.47301 * 175.00426 * 5 4 3 9 9 O 1.20824 * 119.99905 * 359.97438 * 8 5 4 10 10 O 1.34230 * 119.99975 * 180.02562 * 8 5 4 11 11 C 1.45202 * 117.00039 * 179.97438 * 10 8 5 12 12 H 1.09001 * 109.46959 * 329.99484 * 11 10 8 13 13 C 1.50699 * 109.47126 * 89.99405 * 11 10 8 14 14 H 1.07995 * 120.00307 * 240.00018 * 13 11 10 15 15 C 1.37879 * 119.99888 * 60.00291 * 13 11 10 16 16 N 1.31512 * 119.99792 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00039 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46936 * 89.99942 * 17 15 13 19 19 H 1.48496 * 109.47117 * 209.99665 * 17 15 13 20 20 H 1.48498 * 109.46919 * 330.00216 * 17 15 13 21 21 C 1.50692 * 109.47083 * 209.99685 * 11 10 8 22 22 C 1.34514 * 125.79372 * 144.99755 * 21 11 10 23 23 C 1.41377 * 106.84421 * 180.02562 * 22 21 11 24 24 C 1.34510 * 106.84356 * 0.02562 * 23 22 21 25 25 O 1.34305 * 108.41734 * 359.73731 * 24 23 22 26 26 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 29 29 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 30 30 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 32 32 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 33 33 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 34 34 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 35 35 H 1.09002 * 109.47028 * 179.97438 * 7 5 4 36 36 H 1.09000 * 109.47335 * 299.99923 * 7 5 4 37 37 H 1.08996 * 109.46933 * 60.00052 * 7 5 4 38 38 H 0.97003 * 119.99814 * 180.02562 * 16 15 13 39 39 H 1.08011 * 126.57375 * 0.03734 * 22 21 11 40 40 H 1.08003 * 126.57646 * 179.97438 * 23 22 21 41 41 H 1.07999 * 125.79098 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8852 0.0000 6 1 3.6448 3.4247 0.8412 7 6 3.6756 3.5684 -1.3080 8 6 5.5817 2.8871 0.1244 9 8 6.1825 1.8420 0.2057 10 8 6.2518 4.0500 0.1458 11 6 7.6968 3.9759 0.2683 12 1 7.9683 3.0841 0.8331 13 6 8.3145 3.9084 -1.1047 14 1 8.9185 3.0578 -1.3838 15 6 8.1085 4.9327 -2.0044 16 7 7.3726 5.9683 -1.6646 17 14 8.8747 4.8493 -3.7060 18 1 7.9366 4.1745 -4.6387 19 1 9.1520 6.2249 -4.1919 20 1 10.1445 4.0822 -3.6400 21 6 8.2033 5.1995 0.9874 22 6 9.2433 5.2370 1.8397 23 6 9.3660 6.5756 2.2776 24 6 8.3934 7.2761 1.6672 25 8 7.6957 6.4385 0.8827 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9564 -0.8900 32 1 1.6764 1.9564 0.8900 33 1 3.9329 0.9289 0.8909 34 1 3.9336 0.9287 -0.8892 35 1 4.0385 4.5962 -1.3083 36 1 4.1105 3.0289 -2.1493 37 1 2.5893 3.5670 -1.3979 38 1 7.2274 6.6887 -2.2977 39 1 9.8653 4.4041 2.1331 40 1 10.0995 6.9615 2.9701 41 1 8.2082 8.3336 1.7841 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345981823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:32 Heat of formation + Delta-G solvation = -112.720654 kcal Electronic energy + Delta-G solvation = -22409.694614 eV Core-core repulsion = 19062.158198 eV Total energy + Delta-G solvation = -3347.536417 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.04354 -41.15858 -37.93148 -36.88296 -34.95982 -34.25352 -33.56312 -31.65692 -29.52986 -28.39504 -26.36178 -25.20313 -23.56777 -22.31732 -21.80198 -21.21760 -20.64026 -18.93364 -18.28371 -18.05532 -16.98261 -16.72556 -16.68696 -16.26170 -16.18983 -15.18202 -15.01838 -14.61144 -14.31919 -14.19554 -13.69811 -13.53582 -13.43738 -13.36311 -13.09764 -13.04031 -12.91089 -12.84441 -12.58940 -12.23734 -12.15842 -11.88010 -11.83113 -11.82557 -11.52606 -11.32238 -11.12877 -10.93552 -10.76001 -10.49755 -9.08223 -8.22349 -6.52916 1.18227 1.35555 1.37356 1.46153 1.54445 1.91125 2.24997 2.32580 2.58918 3.08048 3.74543 3.83681 3.95343 4.23267 4.23707 4.30255 4.34083 4.39831 4.46678 4.49309 4.60529 4.72172 4.80151 4.85289 4.94517 5.00341 5.05972 5.12637 5.14104 5.23672 5.24634 5.32108 5.41309 5.43538 5.50047 5.56271 5.56709 5.79694 5.89575 6.02298 6.50686 6.71368 7.14532 7.27416 8.75354 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017470 B = 0.004963 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.357009 B = 5640.911689 C = 6529.424963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.112 4.112 4 C -0.096 4.096 5 C -0.078 4.078 6 H 0.119 0.881 7 C -0.132 4.132 8 C 0.448 3.552 9 O -0.561 6.561 10 O -0.346 6.346 11 C 0.277 3.723 12 H 0.053 0.947 13 C -0.579 4.579 14 H 0.057 0.943 15 C 0.046 3.954 16 N -0.842 5.842 17 Si 0.952 3.048 18 H -0.272 1.272 19 H -0.272 1.272 20 H -0.271 1.271 21 C 0.042 3.958 22 C -0.267 4.267 23 C -0.219 4.219 24 C -0.081 4.081 25 O -0.145 6.145 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.042 0.958 37 H 0.102 0.898 38 H 0.269 0.731 39 H 0.143 0.857 40 H 0.170 0.830 41 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.192 -1.967 3.792 11.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.150 4.150 4 C -0.133 4.133 5 C -0.097 4.097 6 H 0.136 0.864 7 C -0.189 4.189 8 C 0.294 3.706 9 O -0.454 6.454 10 O -0.261 6.261 11 C 0.224 3.776 12 H 0.071 0.929 13 C -0.615 4.615 14 H 0.075 0.925 15 C -0.163 4.163 16 N -0.475 5.475 17 Si 0.777 3.223 18 H -0.197 1.197 19 H -0.196 1.196 20 H -0.195 1.195 21 C -0.011 4.011 22 C -0.286 4.286 23 C -0.238 4.238 24 C -0.150 4.150 25 O -0.038 6.038 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.120 0.880 38 H 0.078 0.922 39 H 0.161 0.839 40 H 0.188 0.812 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -10.311 -1.956 3.593 11.092 hybrid contribution 1.281 -0.162 -0.778 1.508 sum -9.029 -2.118 2.815 9.692 Atomic orbital electron populations 1.21751 0.94696 1.01992 1.02203 1.21527 0.96702 0.96281 1.01877 1.21647 0.92288 0.97748 1.03285 1.21435 0.97017 0.92623 1.02271 1.21167 0.85627 1.00399 1.02461 0.86353 1.21689 1.03119 1.00005 0.94081 1.24462 0.92963 0.81901 0.71304 1.90496 1.71858 1.34438 1.48584 1.86699 1.24664 1.33852 1.80890 1.18586 0.75830 0.88211 0.94940 0.92869 1.21354 1.34858 1.06951 0.98316 0.92495 1.25733 0.94361 0.94170 1.01994 1.70152 1.34187 1.07365 1.35777 0.85653 0.79088 0.77987 0.79619 1.19715 1.19642 1.19547 1.22723 0.96880 0.85014 0.96451 1.21547 1.02575 0.99631 1.04830 1.21900 1.02999 0.92772 1.06130 1.24729 0.96297 0.97762 0.96163 1.84350 1.49744 1.17097 1.52565 0.92328 0.92287 0.92370 0.92449 0.92288 0.90591 0.90728 0.92266 0.92767 0.93070 0.93899 0.87950 0.92192 0.83884 0.81227 0.75791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 71.98 0.71 -1.50 16 2 C -0.13 -2.34 5.93 30.60 0.18 -2.16 16 3 C -0.11 -2.29 4.97 30.60 0.15 -2.14 16 4 C -0.10 -2.74 4.03 30.60 0.12 -2.62 16 5 C -0.08 -2.59 2.83 -11.54 -0.03 -2.63 16 6 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 7 C -0.13 -4.16 8.88 71.98 0.64 -3.52 16 8 C 0.45 20.78 7.22 71.24 0.51 21.29 16 9 O -0.56 -28.62 15.14 21.97 0.33 -28.28 16 10 O -0.35 -18.15 9.15 -48.77 -0.45 -18.60 16 11 C 0.28 15.15 2.58 29.10 0.07 15.23 16 12 H 0.05 2.95 7.16 -2.39 -0.02 2.93 16 13 C -0.58 -33.32 8.90 25.60 0.23 -33.09 16 14 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 15 C 0.05 2.54 5.24 84.66 0.44 2.98 16 16 N -0.84 -46.64 10.63 21.45 0.23 -46.42 16 17 Si 0.95 43.25 29.54 68.60 2.03 45.27 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 C 0.04 2.16 5.59 24.83 0.14 2.30 16 22 C -0.27 -11.91 10.81 22.19 0.24 -11.67 16 23 C -0.22 -8.25 10.91 22.19 0.24 -8.00 16 24 C -0.08 -3.17 12.09 66.97 0.81 -2.36 16 25 O -0.14 -7.20 8.87 0.86 0.01 -7.20 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.41 6.56 -2.39 -0.02 1.40 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.80 7.96 -2.39 -0.02 1.78 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.87 8.11 -2.39 -0.02 1.85 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.10 2.34 6.56 -2.39 -0.02 2.33 16 38 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 39 H 0.14 5.86 8.06 -2.90 -0.02 5.84 16 40 H 0.17 4.91 8.06 -2.91 -0.02 4.89 16 41 H 0.23 6.40 8.06 -2.91 -0.02 6.37 16 Total: -1.00 -68.28 344.47 7.61 -60.67 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 1.00 Total: 22.44 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: 4.47 Total: -27.89 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.23 Total: -46.42 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -0.11 Total: -54.08 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -68.28 7.61 -60.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345981823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.048 kcal (2) G-P(sol) polarization free energy of solvation -68.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds