Wall clock time and date at job start Tue Mar 31 2020 01:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47201 * 2 1 4 4 C 1.52995 * 109.47622 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47399 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.46986 * 305.00151 * 5 4 3 7 7 C 1.53001 * 109.46909 * 65.00404 * 5 4 3 8 8 C 1.50707 * 109.46827 * 185.00124 * 5 4 3 9 9 O 1.20817 * 120.00274 * 0.02562 * 8 5 4 10 10 O 1.34227 * 119.99356 * 180.02562 * 8 5 4 11 11 C 1.45204 * 116.99468 * 179.97438 * 10 8 5 12 12 H 1.09003 * 109.47416 * 30.00607 * 11 10 8 13 13 C 1.50699 * 109.47451 * 270.00042 * 11 10 8 14 14 H 1.08001 * 119.99971 * 125.39895 * 13 11 10 15 15 C 1.37873 * 119.99911 * 305.12924 * 13 11 10 16 16 N 1.31511 * 120.00473 * 355.40272 * 15 13 11 17 17 Si 1.86809 * 119.99801 * 175.40687 * 15 13 11 18 18 H 1.48493 * 109.47176 * 94.99696 * 17 15 13 19 19 H 1.48501 * 109.46870 * 214.99479 * 17 15 13 20 20 H 1.48500 * 109.46833 * 334.99490 * 17 15 13 21 21 C 1.50704 * 109.46946 * 150.00232 * 11 10 8 22 22 C 1.34512 * 125.79222 * 214.56384 * 21 11 10 23 23 C 1.41374 * 106.84438 * 179.88689 * 22 21 11 24 24 C 1.34517 * 106.84187 * 0.37301 * 23 22 21 25 25 O 1.34305 * 108.41745 * 359.77073 * 24 23 22 26 26 H 1.09006 * 109.46759 * 59.99780 * 1 2 3 27 27 H 1.08992 * 109.47019 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47496 * 300.00340 * 1 2 3 29 29 H 1.08993 * 109.47238 * 240.00088 * 2 1 3 30 30 H 1.09003 * 109.47011 * 119.99311 * 2 1 3 31 31 H 1.08997 * 109.47173 * 59.99462 * 3 2 1 32 32 H 1.09003 * 109.47069 * 300.00165 * 3 2 1 33 33 H 1.09005 * 109.46800 * 59.99766 * 4 3 2 34 34 H 1.09006 * 109.46786 * 300.00495 * 4 3 2 35 35 H 1.09001 * 109.46740 * 180.02562 * 7 5 4 36 36 H 1.09004 * 109.46655 * 299.99493 * 7 5 4 37 37 H 1.08998 * 109.47608 * 59.99529 * 7 5 4 38 38 H 0.96999 * 120.00157 * 180.02562 * 16 15 13 39 39 H 1.08008 * 126.57462 * 0.02562 * 22 21 11 40 40 H 1.08003 * 126.58360 * 180.16378 * 23 22 21 41 41 H 1.08001 * 125.79160 * 179.75106 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6457 3.4236 -0.8423 7 6 3.6747 3.5699 1.3068 8 6 5.5820 2.8868 -0.1232 9 8 6.1828 1.8417 -0.2029 10 8 6.2522 4.0496 -0.1445 11 6 7.6973 3.9753 -0.2647 12 1 7.9697 3.0830 -0.8285 13 6 8.3130 3.9088 1.1092 14 1 8.9866 3.1029 1.3607 15 6 8.0207 4.8798 2.0433 16 7 7.2776 5.9120 1.7085 17 14 8.6803 4.7294 3.7846 18 1 9.9454 5.4979 3.9028 19 1 7.6812 5.2706 4.7407 20 1 8.9384 3.3002 4.0943 21 6 8.2051 5.1984 -0.9840 22 6 9.2515 5.2367 -1.8284 23 6 9.3716 6.5739 -2.2714 24 6 8.3966 7.2745 -1.6648 25 8 7.6932 6.4362 -0.8862 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 0.9287 -0.8891 34 1 3.9330 0.9289 0.8909 35 1 4.0376 4.5977 1.3062 36 1 2.5883 3.5686 1.3959 37 1 4.1089 3.0313 2.1491 38 1 7.0723 6.5953 2.3656 39 1 9.8781 4.4049 -2.1149 40 1 10.1074 6.9597 -2.9615 41 1 8.2112 8.3318 -1.7834 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345981824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:35 Heat of formation + Delta-G solvation = -97.963620 kcal Electronic energy + Delta-G solvation = -22421.235036 eV Core-core repulsion = 19074.338532 eV Total energy + Delta-G solvation = -3346.896504 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.31079 -39.38060 -36.55444 -35.22251 -33.24871 -32.80107 -31.83104 -29.86572 -28.45963 -26.51722 -25.00120 -23.50450 -22.19161 -20.90755 -20.54201 -19.45373 -19.04381 -17.00111 -16.53732 -16.30975 -15.58425 -15.06585 -14.96187 -14.66358 -14.44693 -13.84445 -13.69264 -13.22373 -13.09058 -12.78587 -12.32934 -11.99762 -11.90033 -11.74424 -11.57378 -11.46148 -11.33774 -11.13587 -11.08069 -10.95157 -10.82367 -10.72154 -10.42699 -10.34114 -10.30797 -9.81401 -9.30421 -9.02984 -8.80620 -8.75198 -7.33010 -6.20224 -4.40528 2.91513 3.19584 3.27278 3.31443 3.33736 3.59020 3.92901 4.26203 4.27454 4.85378 4.95162 5.06627 5.13162 5.27277 5.33244 5.49513 5.59776 5.72822 5.75533 5.81919 5.86160 5.94495 5.98493 6.01353 6.04600 6.19308 6.19614 6.30783 6.40170 6.43441 6.51245 6.59932 6.74416 6.81656 6.91783 7.22006 7.49488 7.64328 7.82090 7.85444 8.41227 8.61142 9.04079 9.32717 10.79237 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017124 B = 0.005037 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.785297 B = 5557.841846 C = 6477.023763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.103 4.103 5 C -0.084 4.084 6 H 0.096 0.904 7 C -0.140 4.140 8 C 0.461 3.539 9 O -0.532 6.532 10 O -0.329 6.329 11 C 0.279 3.721 12 H 0.069 0.931 13 C -0.550 4.550 14 H 0.073 0.927 15 C 0.083 3.917 16 N -0.826 5.826 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.281 1.281 20 H -0.269 1.269 21 C 0.081 3.919 22 C -0.266 4.266 23 C -0.221 4.221 24 C -0.083 4.083 25 O -0.120 6.120 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.266 0.734 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.079 -3.014 -3.683 10.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.141 4.141 5 C -0.103 4.103 6 H 0.114 0.886 7 C -0.197 4.197 8 C 0.304 3.696 9 O -0.423 6.423 10 O -0.244 6.244 11 C 0.227 3.773 12 H 0.087 0.913 13 C -0.586 4.586 14 H 0.091 0.909 15 C -0.127 4.127 16 N -0.459 5.459 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.207 1.207 20 H -0.194 1.194 21 C 0.028 3.972 22 C -0.285 4.285 23 C -0.240 4.240 24 C -0.152 4.152 25 O -0.012 6.012 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -9.209 -3.009 -3.470 10.291 hybrid contribution 0.891 0.142 0.849 1.239 sum -8.318 -2.867 -2.622 9.180 Atomic orbital electron populations 1.21777 0.96185 1.01270 1.01691 1.21528 0.95439 0.97196 1.02117 1.21680 0.95333 0.96581 1.02176 1.21467 0.94481 0.94686 1.03440 1.20973 0.89874 0.98301 1.01165 0.88623 1.21733 1.00600 1.02121 0.95262 1.23252 0.90770 0.82951 0.72583 1.90529 1.70698 1.33763 1.47354 1.86696 1.24774 1.32367 1.80561 1.18742 0.75422 0.87669 0.95495 0.91284 1.21229 1.30314 1.11507 0.95561 0.90893 1.25109 0.94081 0.94301 0.99238 1.70061 1.33107 1.08483 1.34219 0.86552 0.78896 0.78858 0.83744 1.20312 1.20680 1.19364 1.22965 0.95080 0.84955 0.94244 1.21158 1.03563 0.97838 1.05973 1.21498 1.02383 0.94302 1.05814 1.23780 0.97098 0.96357 0.97932 1.84391 1.48100 1.16889 1.51773 0.92869 0.93059 0.92831 0.92070 0.92010 0.91606 0.92051 0.91310 0.91251 0.90559 0.92190 0.92440 0.92404 0.84968 0.85157 0.80010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.13 -1.27 5.93 -26.73 -0.16 -1.43 16 3 C -0.12 -1.36 4.97 -26.73 -0.13 -1.49 16 4 C -0.10 -1.50 4.03 -26.74 -0.11 -1.61 16 5 C -0.08 -1.41 2.83 -91.77 -0.26 -1.67 16 6 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 7 C -0.14 -2.26 8.88 37.16 0.33 -1.93 16 8 C 0.46 10.31 7.22 36.01 0.26 10.57 16 9 O -0.53 -12.95 15.14 -18.74 -0.28 -13.23 16 10 O -0.33 -8.29 8.97 -42.06 -0.38 -8.67 16 11 C 0.28 7.29 2.57 -29.03 -0.07 7.21 16 12 H 0.07 1.78 7.16 -51.93 -0.37 1.41 16 13 C -0.55 -15.20 8.88 -34.44 -0.31 -15.51 16 14 H 0.07 2.02 7.82 -52.49 -0.41 1.61 16 15 C 0.08 2.24 5.26 -17.82 -0.09 2.15 16 16 N -0.83 -22.55 10.80 55.43 0.60 -21.95 16 17 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 C 0.08 2.03 5.68 -35.62 -0.20 1.83 16 22 C -0.27 -5.95 10.81 -39.71 -0.43 -6.38 16 23 C -0.22 -4.39 10.91 -39.70 -0.43 -4.83 16 24 C -0.08 -1.69 12.09 29.42 0.36 -1.33 16 25 O -0.12 -2.97 9.11 1.96 0.02 -2.95 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.72 6.56 -51.93 -0.34 0.38 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.04 7.96 -51.93 -0.41 0.63 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 36 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.13 2.69 8.06 -52.48 -0.42 2.27 16 40 H 0.13 2.14 8.06 -52.48 -0.42 1.72 16 41 H 0.18 2.90 8.06 -52.49 -0.42 2.48 16 LS Contribution 344.78 15.07 5.20 5.20 Total: -1.00 -30.49 344.78 -7.26 -37.75 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.51 Total: 3.43 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -0.88 Total: -15.38 kcal Atomic # 7 Polarization: -22.55 SS G_CDS: 0.60 Total: -21.95 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.64 Total: -24.85 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.49 -7.26 -37.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345981824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.214 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds