Wall clock time and date at job start Tue Mar 31 2020 01:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47201 * 2 1 4 4 C 1.52995 * 109.47622 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47399 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.46986 * 305.00151 * 5 4 3 7 7 C 1.53001 * 109.46909 * 65.00404 * 5 4 3 8 8 C 1.50707 * 109.46827 * 185.00124 * 5 4 3 9 9 O 1.20817 * 120.00274 * 0.02562 * 8 5 4 10 10 O 1.34227 * 119.99356 * 180.02562 * 8 5 4 11 11 C 1.45204 * 116.99468 * 179.97438 * 10 8 5 12 12 H 1.09003 * 109.47416 * 30.00607 * 11 10 8 13 13 C 1.50699 * 109.47451 * 270.00042 * 11 10 8 14 14 H 1.08001 * 119.99971 * 125.39895 * 13 11 10 15 15 C 1.37873 * 119.99911 * 305.12924 * 13 11 10 16 16 N 1.31511 * 120.00473 * 355.40272 * 15 13 11 17 17 Si 1.86809 * 119.99801 * 175.40687 * 15 13 11 18 18 H 1.48493 * 109.47176 * 94.99696 * 17 15 13 19 19 H 1.48501 * 109.46870 * 214.99479 * 17 15 13 20 20 H 1.48500 * 109.46833 * 334.99490 * 17 15 13 21 21 C 1.50704 * 109.46946 * 150.00232 * 11 10 8 22 22 C 1.34512 * 125.79222 * 214.56384 * 21 11 10 23 23 C 1.41374 * 106.84438 * 179.88689 * 22 21 11 24 24 C 1.34517 * 106.84187 * 0.37301 * 23 22 21 25 25 O 1.34305 * 108.41745 * 359.77073 * 24 23 22 26 26 H 1.09006 * 109.46759 * 59.99780 * 1 2 3 27 27 H 1.08992 * 109.47019 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47496 * 300.00340 * 1 2 3 29 29 H 1.08993 * 109.47238 * 240.00088 * 2 1 3 30 30 H 1.09003 * 109.47011 * 119.99311 * 2 1 3 31 31 H 1.08997 * 109.47173 * 59.99462 * 3 2 1 32 32 H 1.09003 * 109.47069 * 300.00165 * 3 2 1 33 33 H 1.09005 * 109.46800 * 59.99766 * 4 3 2 34 34 H 1.09006 * 109.46786 * 300.00495 * 4 3 2 35 35 H 1.09001 * 109.46740 * 180.02562 * 7 5 4 36 36 H 1.09004 * 109.46655 * 299.99493 * 7 5 4 37 37 H 1.08998 * 109.47608 * 59.99529 * 7 5 4 38 38 H 0.96999 * 120.00157 * 180.02562 * 16 15 13 39 39 H 1.08008 * 126.57462 * 0.02562 * 22 21 11 40 40 H 1.08003 * 126.58360 * 180.16378 * 23 22 21 41 41 H 1.08001 * 125.79160 * 179.75106 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6457 3.4236 -0.8423 7 6 3.6747 3.5699 1.3068 8 6 5.5820 2.8868 -0.1232 9 8 6.1828 1.8417 -0.2029 10 8 6.2522 4.0496 -0.1445 11 6 7.6973 3.9753 -0.2647 12 1 7.9697 3.0830 -0.8285 13 6 8.3130 3.9088 1.1092 14 1 8.9866 3.1029 1.3607 15 6 8.0207 4.8798 2.0433 16 7 7.2776 5.9120 1.7085 17 14 8.6803 4.7294 3.7846 18 1 9.9454 5.4979 3.9028 19 1 7.6812 5.2706 4.7407 20 1 8.9384 3.3002 4.0943 21 6 8.2051 5.1984 -0.9840 22 6 9.2515 5.2367 -1.8284 23 6 9.3716 6.5739 -2.2714 24 6 8.3966 7.2745 -1.6648 25 8 7.6932 6.4362 -0.8862 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 0.9287 -0.8891 34 1 3.9330 0.9289 0.8909 35 1 4.0376 4.5977 1.3062 36 1 2.5883 3.5686 1.3959 37 1 4.1089 3.0313 2.1491 38 1 7.0723 6.5953 2.3656 39 1 9.8781 4.4049 -2.1149 40 1 10.1074 6.9597 -2.9615 41 1 8.2112 8.3318 -1.7834 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345981824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:34 Heat of formation + Delta-G solvation = -113.127862 kcal Electronic energy + Delta-G solvation = -22421.892607 eV Core-core repulsion = 19074.338532 eV Total energy + Delta-G solvation = -3347.554074 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.05304 -41.16374 -37.93565 -36.88561 -34.93518 -34.25275 -33.57328 -31.67580 -29.53011 -28.39200 -26.36168 -25.20216 -23.57206 -22.32600 -21.80279 -21.21113 -20.64159 -18.93615 -18.28612 -18.05885 -16.98136 -16.71979 -16.68639 -16.27828 -16.18941 -15.18391 -15.01990 -14.61173 -14.32016 -14.19439 -13.69846 -13.52356 -13.44512 -13.37461 -13.09640 -13.05183 -12.92514 -12.83407 -12.58926 -12.24111 -12.15832 -11.88540 -11.83538 -11.82912 -11.52723 -11.31961 -11.09802 -10.95729 -10.75143 -10.50947 -9.08397 -8.22064 -6.51033 1.17615 1.34593 1.36829 1.47058 1.54304 1.90909 2.24945 2.32871 2.57721 3.07916 3.74519 3.83350 3.95317 4.23260 4.23503 4.30252 4.33831 4.39645 4.46721 4.50250 4.60434 4.71577 4.80119 4.85297 4.94494 5.00335 5.05975 5.12407 5.14010 5.23265 5.24633 5.32246 5.41339 5.44488 5.50057 5.55845 5.56498 5.79637 5.89242 6.01739 6.50805 6.70320 7.14410 7.28468 8.76210 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017124 B = 0.005037 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.785297 B = 5557.841846 C = 6477.023763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.112 4.112 4 C -0.096 4.096 5 C -0.077 4.077 6 H 0.119 0.881 7 C -0.132 4.132 8 C 0.448 3.552 9 O -0.560 6.560 10 O -0.342 6.342 11 C 0.278 3.722 12 H 0.054 0.946 13 C -0.581 4.581 14 H 0.057 0.943 15 C 0.048 3.952 16 N -0.842 5.842 17 Si 0.951 3.049 18 H -0.271 1.271 19 H -0.270 1.270 20 H -0.274 1.274 21 C 0.040 3.960 22 C -0.267 4.267 23 C -0.218 4.218 24 C -0.081 4.081 25 O -0.148 6.148 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.102 0.898 37 H 0.042 0.958 38 H 0.268 0.732 39 H 0.144 0.856 40 H 0.171 0.829 41 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.213 -1.978 -3.850 11.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.150 4.150 4 C -0.134 4.134 5 C -0.096 4.096 6 H 0.136 0.864 7 C -0.189 4.189 8 C 0.293 3.707 9 O -0.453 6.453 10 O -0.257 6.257 11 C 0.225 3.775 12 H 0.071 0.929 13 C -0.617 4.617 14 H 0.075 0.925 15 C -0.161 4.161 16 N -0.475 5.475 17 Si 0.775 3.225 18 H -0.197 1.197 19 H -0.195 1.195 20 H -0.198 1.198 21 C -0.012 4.012 22 C -0.286 4.286 23 C -0.237 4.237 24 C -0.149 4.149 25 O -0.041 6.041 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.120 0.880 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.161 0.839 40 H 0.188 0.812 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -10.350 -1.974 -3.645 11.149 hybrid contribution 1.269 -0.176 0.793 1.507 sum -9.080 -2.151 -2.852 9.758 Atomic orbital electron populations 1.21752 0.94697 1.01991 1.02202 1.21528 0.96700 0.96279 1.01878 1.21646 0.92288 0.97748 1.03283 1.21435 0.97018 0.92617 1.02282 1.21161 0.85588 1.00394 1.02468 0.86354 1.21689 1.03098 1.00013 0.94100 1.24469 0.92978 0.81892 0.71323 1.90497 1.71838 1.34424 1.48535 1.86683 1.24361 1.33748 1.80921 1.18561 0.75880 0.88150 0.94884 0.92867 1.21352 1.31234 1.11826 0.97244 0.92462 1.25703 0.94263 0.93844 1.02311 1.70157 1.33481 1.08689 1.35128 0.85674 0.78694 0.78499 0.79671 1.19658 1.19458 1.19828 1.22833 0.96775 0.85109 0.96523 1.21544 1.02457 0.99689 1.04901 1.21909 1.02995 0.92786 1.06044 1.24733 0.96182 0.97727 0.96281 1.84326 1.49424 1.17212 1.53173 0.92287 0.92324 0.92374 0.92282 0.92450 0.90605 0.90723 0.92263 0.92752 0.93064 0.87969 0.93887 0.92227 0.83861 0.81185 0.75727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 71.98 0.71 -1.50 16 2 C -0.13 -2.34 5.93 30.60 0.18 -2.16 16 3 C -0.11 -2.29 4.97 30.60 0.15 -2.14 16 4 C -0.10 -2.74 4.03 30.59 0.12 -2.62 16 5 C -0.08 -2.58 2.83 -11.54 -0.03 -2.62 16 6 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 7 C -0.13 -4.17 8.88 71.98 0.64 -3.54 16 8 C 0.45 20.76 7.22 71.24 0.51 21.28 16 9 O -0.56 -28.59 15.14 21.99 0.33 -28.26 16 10 O -0.34 -17.93 8.97 -48.70 -0.44 -18.36 16 11 C 0.28 15.20 2.57 29.10 0.07 15.27 16 12 H 0.05 2.94 7.16 -2.39 -0.02 2.93 16 13 C -0.58 -33.41 8.88 25.60 0.23 -33.19 16 14 H 0.06 3.34 7.82 -2.91 -0.02 3.32 16 15 C 0.05 2.61 5.26 84.65 0.44 3.06 16 16 N -0.84 -46.61 10.80 21.45 0.23 -46.38 16 17 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 21 C 0.04 2.06 5.68 24.83 0.14 2.20 16 22 C -0.27 -11.88 10.81 22.19 0.24 -11.64 16 23 C -0.22 -8.19 10.91 22.19 0.24 -7.95 16 24 C -0.08 -3.15 12.09 66.97 0.81 -2.34 16 25 O -0.15 -7.37 9.11 1.04 0.01 -7.36 16 26 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.41 6.56 -2.39 -0.02 1.40 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.80 7.96 -2.38 -0.02 1.78 16 34 H 0.05 1.70 8.14 -2.38 -0.02 1.69 16 35 H 0.05 1.88 8.11 -2.39 -0.02 1.86 16 36 H 0.10 2.35 6.57 -2.38 -0.02 2.33 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 39 H 0.14 5.86 8.06 -2.91 -0.02 5.83 16 40 H 0.17 4.90 8.06 -2.91 -0.02 4.88 16 41 H 0.23 6.37 8.06 -2.91 -0.02 6.35 16 Total: -1.00 -68.33 344.78 7.63 -60.70 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 1.00 Total: 22.25 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 4.47 Total: -27.88 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.23 Total: -46.38 kcal Atomic # 8 Polarization: -53.89 SS G_CDS: -0.09 Total: -53.98 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -68.33 7.63 -60.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345981824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.423 kcal (2) G-P(sol) polarization free energy of solvation -68.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds