Wall clock time and date at job start Tue Mar 31 2020 01:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46997 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47146 * 54.99480 * 5 4 3 7 7 C 1.53005 * 109.46836 * 295.00188 * 5 4 3 8 8 C 1.50697 * 109.47301 * 175.00426 * 5 4 3 9 9 O 1.20824 * 119.99905 * 359.97438 * 8 5 4 10 10 O 1.34230 * 119.99975 * 180.02562 * 8 5 4 11 11 C 1.45202 * 117.00039 * 179.97438 * 10 8 5 12 12 H 1.09001 * 109.46959 * 329.99484 * 11 10 8 13 13 C 1.50692 * 109.47083 * 209.99685 * 11 10 8 14 14 H 1.08001 * 120.00391 * 359.97438 * 13 11 10 15 15 C 1.37874 * 119.99996 * 179.97438 * 13 11 10 16 16 N 1.31512 * 120.00179 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 119.99905 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47524 * 60.00025 * 17 15 13 19 19 H 1.48505 * 109.46946 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47001 * 299.99522 * 17 15 13 21 21 C 1.50699 * 109.47126 * 89.99405 * 11 10 8 22 22 C 1.34515 * 125.78985 * 219.71399 * 21 11 10 23 23 C 1.41381 * 106.84071 * 179.89343 * 22 21 11 24 24 C 1.34515 * 106.84111 * 0.37402 * 23 22 21 25 25 O 1.34306 * 108.42307 * 359.76968 * 24 23 22 26 26 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 29 29 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 30 30 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 32 32 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 33 33 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 34 34 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 35 35 H 1.09000 * 109.47335 * 299.99923 * 7 5 4 36 36 H 1.08996 * 109.46933 * 60.00052 * 7 5 4 37 37 H 1.09002 * 109.47028 * 179.97438 * 7 5 4 38 38 H 0.97000 * 119.99993 * 179.97438 * 16 15 13 39 39 H 1.08003 * 126.57877 * 0.02951 * 22 21 11 40 40 H 1.07997 * 126.57920 * 180.16953 * 23 22 21 41 41 H 1.08003 * 125.78913 * 179.75676 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8852 0.0000 6 1 3.6448 3.4247 0.8412 7 6 3.6756 3.5684 -1.3080 8 6 5.5817 2.8871 0.1244 9 8 6.1825 1.8420 0.2057 10 8 6.2518 4.0500 0.1458 11 6 7.6968 3.9759 0.2683 12 1 7.9683 3.0841 0.8331 13 6 8.2033 5.1995 0.9874 14 1 7.5089 5.9573 1.3189 15 6 9.5534 5.3516 1.2222 16 7 10.3991 4.4287 0.8190 17 14 10.1812 6.8681 2.1143 18 1 9.5722 6.9343 3.4670 19 1 11.6590 6.7924 2.2394 20 1 9.8117 8.0834 1.3449 21 6 8.3145 3.9084 -1.1047 22 6 9.3641 3.1451 -1.4584 23 6 9.6046 3.3896 -2.8299 24 6 8.6929 4.2940 -3.2303 25 8 7.9141 4.6046 -2.1812 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9564 -0.8900 32 1 1.6764 1.9564 0.8900 33 1 3.9329 0.9289 0.8909 34 1 3.9336 0.9287 -0.8892 35 1 4.1105 3.0289 -2.1493 36 1 2.5893 3.5670 -1.3979 37 1 4.0385 4.5962 -1.3083 38 1 11.3489 4.5359 0.9839 39 1 9.9156 2.4726 -0.8181 40 1 10.3749 2.9394 -3.4385 41 1 8.6026 4.7014 -4.2265 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345981825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:38 Heat of formation + Delta-G solvation = -102.145577 kcal Electronic energy + Delta-G solvation = -22270.174180 eV Core-core repulsion = 18923.096333 eV Total energy + Delta-G solvation = -3347.077847 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.33698 -39.71251 -36.75298 -35.50117 -33.48886 -33.12958 -31.70103 -29.68864 -28.60993 -26.65054 -25.22933 -23.51337 -22.24148 -21.02005 -20.53408 -19.73345 -19.04760 -17.11179 -16.65330 -16.53306 -15.73110 -15.34981 -15.06485 -14.77300 -14.46486 -14.03667 -13.72492 -13.51884 -13.10024 -12.74860 -12.55292 -12.15604 -11.98946 -11.76250 -11.65647 -11.55852 -11.37169 -11.23408 -11.13230 -10.97352 -10.94232 -10.88927 -10.61686 -10.45937 -10.37560 -10.05497 -9.52884 -9.38727 -8.81306 -8.64087 -7.24976 -6.20707 -4.38773 2.87742 2.96569 3.23533 3.26793 3.28580 3.54890 3.96120 4.19850 4.28149 4.71641 4.85174 4.96371 5.07476 5.11663 5.15908 5.31760 5.43175 5.61763 5.64237 5.70660 5.79968 5.84082 5.89826 5.92227 6.01502 6.03784 6.08460 6.17392 6.22271 6.38470 6.40623 6.47382 6.74883 6.99705 7.16175 7.24045 7.41825 7.70476 7.71055 7.87964 8.37413 8.54277 8.80666 9.28116 10.78040 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.004440 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.540933 B = 6304.753263 C = 7032.850485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.105 4.105 5 C -0.085 4.085 6 H 0.103 0.897 7 C -0.143 4.143 8 C 0.456 3.544 9 O -0.517 6.517 10 O -0.347 6.347 11 C 0.297 3.703 12 H 0.078 0.922 13 C -0.532 4.532 14 H 0.077 0.923 15 C 0.069 3.931 16 N -0.868 5.868 17 Si 0.914 3.086 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.027 3.973 22 C -0.179 4.179 23 C -0.218 4.218 24 C -0.089 4.089 25 O -0.176 6.176 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.269 0.731 39 H 0.141 0.859 40 H 0.130 0.870 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.176 -4.224 -3.771 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.142 4.142 5 C -0.104 4.104 6 H 0.121 0.879 7 C -0.200 4.200 8 C 0.298 3.702 9 O -0.407 6.407 10 O -0.263 6.263 11 C 0.244 3.756 12 H 0.095 0.905 13 C -0.569 4.569 14 H 0.095 0.905 15 C -0.137 4.137 16 N -0.502 5.502 17 Si 0.740 3.260 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.199 1.199 21 C -0.024 4.024 22 C -0.199 4.199 23 C -0.237 4.237 24 C -0.157 4.157 25 O -0.073 6.073 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.158 0.842 40 H 0.148 0.852 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -12.975 -4.363 -3.745 14.192 hybrid contribution 1.097 0.640 0.227 1.291 sum -11.877 -3.723 -3.518 12.935 Atomic orbital electron populations 1.21776 0.96092 1.01368 1.01703 1.21528 0.95530 0.97063 1.02207 1.21679 0.95036 0.96784 1.02246 1.21491 0.94771 0.94283 1.03694 1.21011 0.89030 0.98927 1.01404 0.87904 1.21780 1.01442 1.01557 0.95266 1.23541 0.91250 0.82813 0.72579 1.90601 1.70643 1.33484 1.45923 1.86545 1.25267 1.32934 1.81593 1.19152 0.70254 1.00871 0.85351 0.90494 1.20856 0.92846 1.05671 1.37494 0.90506 1.24947 0.96107 0.97370 0.95233 1.70024 1.03333 1.33350 1.43541 0.86293 0.77571 0.82117 0.79988 1.19715 1.20943 1.19851 1.23555 0.98836 0.92213 0.87765 1.21208 1.00023 1.04802 0.93828 1.21688 1.02304 1.03116 0.96611 1.23597 0.96558 1.03402 0.92128 1.83991 1.50157 1.55575 1.17565 0.92993 0.92817 0.92835 0.91996 0.91969 0.91594 0.91885 0.90978 0.91217 0.92328 0.91489 0.91005 0.92117 0.84151 0.85171 0.79915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.82 16 2 C -0.13 -1.15 5.93 -26.73 -0.16 -1.31 16 3 C -0.12 -1.19 4.97 -26.73 -0.13 -1.32 16 4 C -0.10 -1.37 4.03 -26.73 -0.11 -1.48 16 5 C -0.08 -1.26 2.83 -91.77 -0.26 -1.51 16 6 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 7 C -0.14 -1.88 8.88 37.16 0.33 -1.55 16 8 C 0.46 9.47 7.22 36.00 0.26 9.73 16 9 O -0.52 -12.10 15.14 -18.75 -0.28 -12.38 16 10 O -0.35 -8.27 9.75 -41.28 -0.40 -8.67 16 11 C 0.30 7.95 2.42 -29.04 -0.07 7.88 16 12 H 0.08 2.21 7.15 -51.93 -0.37 1.84 16 13 C -0.53 -14.78 8.89 -34.45 -0.31 -15.09 16 14 H 0.08 2.09 7.81 -52.49 -0.41 1.68 16 15 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 16 N -0.87 -24.17 10.93 55.43 0.61 -23.57 16 17 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 C 0.03 0.72 5.54 -35.63 -0.20 0.52 16 22 C -0.18 -4.52 9.16 -39.70 -0.36 -4.88 16 23 C -0.22 -4.71 10.91 -39.70 -0.43 -5.14 16 24 C -0.09 -1.86 12.09 29.42 0.36 -1.50 16 25 O -0.18 -4.36 10.65 4.45 0.05 -4.32 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.61 6.56 -51.93 -0.34 0.26 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.01 7.96 -51.93 -0.41 0.60 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.68 6.56 -51.93 -0.34 0.34 16 37 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.14 3.63 7.85 -52.48 -0.41 3.22 16 40 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 41 H 0.18 2.87 8.06 -52.48 -0.42 2.45 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -30.90 345.12 -7.16 -38.06 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.49 Total: 4.39 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -0.81 Total: -14.68 kcal Atomic # 7 Polarization: -24.17 SS G_CDS: 0.61 Total: -23.57 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.64 Total: -25.37 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.90 -7.16 -38.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345981825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.088 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds