Wall clock time and date at job start Tue Mar 31 2020 01:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46997 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47146 * 54.99480 * 5 4 3 7 7 C 1.53005 * 109.46836 * 295.00188 * 5 4 3 8 8 C 1.50697 * 109.47301 * 175.00426 * 5 4 3 9 9 O 1.20824 * 119.99905 * 359.97438 * 8 5 4 10 10 O 1.34230 * 119.99975 * 180.02562 * 8 5 4 11 11 C 1.45202 * 117.00039 * 179.97438 * 10 8 5 12 12 H 1.09001 * 109.46959 * 329.99484 * 11 10 8 13 13 C 1.50692 * 109.47083 * 209.99685 * 11 10 8 14 14 H 1.08001 * 120.00391 * 359.97438 * 13 11 10 15 15 C 1.37874 * 119.99996 * 179.97438 * 13 11 10 16 16 N 1.31512 * 120.00179 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 119.99905 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47524 * 60.00025 * 17 15 13 19 19 H 1.48505 * 109.46946 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47001 * 299.99522 * 17 15 13 21 21 C 1.50699 * 109.47126 * 89.99405 * 11 10 8 22 22 C 1.34515 * 125.78985 * 219.71399 * 21 11 10 23 23 C 1.41381 * 106.84071 * 179.89343 * 22 21 11 24 24 C 1.34515 * 106.84111 * 0.37402 * 23 22 21 25 25 O 1.34306 * 108.42307 * 359.76968 * 24 23 22 26 26 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 29 29 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 30 30 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 32 32 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 33 33 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 34 34 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 35 35 H 1.09000 * 109.47335 * 299.99923 * 7 5 4 36 36 H 1.08996 * 109.46933 * 60.00052 * 7 5 4 37 37 H 1.09002 * 109.47028 * 179.97438 * 7 5 4 38 38 H 0.97000 * 119.99993 * 179.97438 * 16 15 13 39 39 H 1.08003 * 126.57877 * 0.02951 * 22 21 11 40 40 H 1.07997 * 126.57920 * 180.16953 * 23 22 21 41 41 H 1.08003 * 125.78913 * 179.75676 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8852 0.0000 6 1 3.6448 3.4247 0.8412 7 6 3.6756 3.5684 -1.3080 8 6 5.5817 2.8871 0.1244 9 8 6.1825 1.8420 0.2057 10 8 6.2518 4.0500 0.1458 11 6 7.6968 3.9759 0.2683 12 1 7.9683 3.0841 0.8331 13 6 8.2033 5.1995 0.9874 14 1 7.5089 5.9573 1.3189 15 6 9.5534 5.3516 1.2222 16 7 10.3991 4.4287 0.8190 17 14 10.1812 6.8681 2.1143 18 1 9.5722 6.9343 3.4670 19 1 11.6590 6.7924 2.2394 20 1 9.8117 8.0834 1.3449 21 6 8.3145 3.9084 -1.1047 22 6 9.3641 3.1451 -1.4584 23 6 9.6046 3.3896 -2.8299 24 6 8.6929 4.2940 -3.2303 25 8 7.9141 4.6046 -2.1812 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9564 -0.8900 32 1 1.6764 1.9564 0.8900 33 1 3.9329 0.9289 0.8909 34 1 3.9336 0.9287 -0.8892 35 1 4.1105 3.0289 -2.1493 36 1 2.5893 3.5670 -1.3979 37 1 4.0385 4.5962 -1.3083 38 1 11.3489 4.5359 0.9839 39 1 9.9156 2.4726 -0.8181 40 1 10.3749 2.9394 -3.4385 41 1 8.6026 4.7014 -4.2265 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345981825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:37 Heat of formation + Delta-G solvation = -118.241596 kcal Electronic energy + Delta-G solvation = -22270.872156 eV Core-core repulsion = 18923.096333 eV Total energy + Delta-G solvation = -3347.775823 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.19066 -41.41669 -38.08632 -37.05061 -35.31935 -34.32076 -33.56266 -31.57813 -29.57467 -28.57860 -26.43679 -25.17131 -23.63939 -22.40387 -21.91585 -21.38322 -20.67985 -18.99634 -18.49958 -18.24458 -17.18803 -16.95382 -16.58781 -16.37125 -16.29845 -15.28057 -14.99649 -14.72360 -14.30550 -14.19750 -13.87082 -13.65772 -13.51071 -13.43608 -13.19429 -13.07553 -13.01435 -12.81396 -12.63396 -12.23807 -12.19643 -12.02969 -11.90277 -11.84852 -11.55640 -11.40609 -11.30654 -11.13595 -10.81462 -10.53507 -9.13408 -8.25270 -6.54450 1.08414 1.28976 1.38473 1.43199 1.50100 1.86853 2.11077 2.39265 2.41242 2.99686 3.65736 3.77059 3.90949 4.16061 4.21732 4.27250 4.29216 4.38291 4.45567 4.55819 4.60412 4.69538 4.78907 4.83455 4.93200 4.99130 5.04034 5.11122 5.13865 5.23862 5.27470 5.31531 5.40125 5.41419 5.44270 5.48865 5.55770 5.66642 5.82275 5.95863 6.46928 6.56930 6.91754 7.17934 8.71609 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.004440 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.540933 B = 6304.753263 C = 7032.850485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.112 4.112 4 C -0.099 4.099 5 C -0.077 4.077 6 H 0.126 0.874 7 C -0.138 4.138 8 C 0.445 3.555 9 O -0.551 6.551 10 O -0.355 6.355 11 C 0.300 3.700 12 H 0.039 0.961 13 C -0.558 4.558 14 H 0.075 0.925 15 C 0.023 3.977 16 N -0.892 5.892 17 Si 0.982 3.018 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.268 1.268 21 C -0.003 4.003 22 C -0.194 4.194 23 C -0.228 4.228 24 C -0.070 4.070 25 O -0.193 6.193 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.107 0.893 37 H 0.059 0.941 38 H 0.271 0.729 39 H 0.120 0.880 40 H 0.166 0.834 41 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.594 -2.973 -4.984 15.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.149 4.149 4 C -0.137 4.137 5 C -0.096 4.096 6 H 0.144 0.856 7 C -0.195 4.195 8 C 0.290 3.710 9 O -0.442 6.442 10 O -0.272 6.272 11 C 0.245 3.755 12 H 0.056 0.944 13 C -0.595 4.595 14 H 0.093 0.907 15 C -0.180 4.180 16 N -0.526 5.526 17 Si 0.804 3.196 18 H -0.186 1.186 19 H -0.202 1.202 20 H -0.193 1.193 21 C -0.053 4.053 22 C -0.214 4.214 23 C -0.247 4.247 24 C -0.136 4.136 25 O -0.090 6.090 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.126 0.874 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.138 0.862 40 H 0.183 0.817 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -14.415 -3.125 -4.961 15.562 hybrid contribution 1.536 0.157 0.539 1.635 sum -12.879 -2.968 -4.422 13.937 Atomic orbital electron populations 1.21751 0.94675 1.01955 1.02275 1.21536 0.96731 0.96455 1.01810 1.21647 0.92008 0.97669 1.03557 1.21475 0.97267 0.92619 1.02335 1.21254 0.84087 1.00787 1.03433 0.85597 1.21793 1.03917 1.00244 0.93525 1.24904 0.93529 0.81499 0.71040 1.90574 1.71882 1.34366 1.47408 1.86539 1.23962 1.34644 1.82013 1.18716 0.71942 0.98903 0.85890 0.94361 1.21132 0.93591 1.06083 1.38697 0.90724 1.25857 0.96008 1.00417 0.95704 1.70164 1.03477 1.34920 1.44084 0.85254 0.77144 0.78128 0.79044 1.18625 1.20192 1.19332 1.23321 0.99853 0.93932 0.88238 1.21279 0.99794 1.04560 0.95761 1.22040 1.03758 1.03804 0.95090 1.24692 0.94378 1.01648 0.92881 1.83962 1.51213 1.55771 1.18081 0.92496 0.92345 0.92131 0.92354 0.92596 0.90039 0.90690 0.92621 0.92487 0.93278 0.87420 0.92153 0.92028 0.86184 0.81673 0.74302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.26 16 2 C -0.13 -2.13 5.93 30.60 0.18 -1.95 16 3 C -0.11 -1.96 4.97 30.60 0.15 -1.81 16 4 C -0.10 -2.55 4.03 30.60 0.12 -2.43 16 5 C -0.08 -2.24 2.83 -11.54 -0.03 -2.27 16 6 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 7 C -0.14 -3.40 8.88 71.98 0.64 -2.76 16 8 C 0.45 19.29 7.22 71.24 0.51 19.80 16 9 O -0.55 -27.41 15.14 21.97 0.33 -27.07 16 10 O -0.36 -17.67 9.75 -49.48 -0.48 -18.15 16 11 C 0.30 16.91 2.42 29.10 0.07 16.98 16 12 H 0.04 2.41 7.15 -2.39 -0.02 2.39 16 13 C -0.56 -32.16 8.89 25.60 0.23 -31.94 16 14 H 0.07 4.19 7.81 -2.91 -0.02 4.16 16 15 C 0.02 1.30 5.30 84.65 0.45 1.75 16 16 N -0.89 -51.20 10.93 21.45 0.23 -50.97 16 17 Si 0.98 43.28 29.54 68.60 2.03 45.31 16 18 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 19 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 21 C 0.00 -0.16 5.54 24.83 0.14 -0.02 16 22 C -0.19 -10.09 9.16 22.19 0.20 -9.89 16 23 C -0.23 -9.57 10.91 22.19 0.24 -9.33 16 24 C -0.07 -2.73 12.09 66.97 0.81 -1.92 16 25 O -0.19 -9.53 10.65 -1.40 -0.01 -9.54 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.20 6.56 -2.39 -0.02 1.19 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.60 7.96 -2.39 -0.02 1.58 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.11 1.79 6.56 -2.39 -0.02 1.77 16 37 H 0.06 1.64 8.11 -2.39 -0.02 1.62 16 38 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 39 H 0.12 6.60 7.85 -2.91 -0.02 6.58 16 40 H 0.17 5.61 8.06 -2.91 -0.02 5.59 16 41 H 0.24 6.34 8.06 -2.91 -0.02 6.32 16 Total: -1.00 -71.01 345.12 7.52 -63.49 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 1.00 Total: 23.99 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 4.43 Total: -27.05 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.23 Total: -50.97 kcal Atomic # 8 Polarization: -54.60 SS G_CDS: -0.16 Total: -54.77 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -71.01 7.52 -63.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345981825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.755 kcal (2) G-P(sol) polarization free energy of solvation -71.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds