Wall clock time and date at job start Tue Mar 31 2020 01:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99907 * 2 1 4 4 H 1.48495 * 109.46993 * 269.99817 * 3 2 1 5 5 H 1.48494 * 109.47154 * 29.99850 * 3 2 1 6 6 H 1.48501 * 109.46788 * 150.00104 * 3 2 1 7 7 C 1.37881 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00060 * 186.60818 * 7 2 1 9 9 C 1.50698 * 119.99716 * 6.61266 * 7 2 1 10 10 C 1.52998 * 112.99759 * 65.39615 * 9 7 2 11 11 O 1.45199 * 109.47408 * 53.51738 * 10 9 7 12 12 C 1.34801 * 116.99957 * 179.97438 * 11 10 9 13 13 O 1.21528 * 120.00141 * 0.02562 * 12 11 10 14 14 C 1.46956 * 119.99965 * 180.02562 * 12 11 10 15 15 C 1.33080 * 119.99851 * 180.02562 * 14 12 11 16 16 C 1.50702 * 119.99756 * 180.02562 * 15 14 12 17 17 C 1.54268 * 110.03160 * 237.16504 * 16 15 14 18 18 C 1.54887 * 104.19611 * 217.10331 * 17 16 15 19 19 C 1.54893 * 102.74953 * 37.94244 * 18 17 16 20 20 C 1.53872 * 110.03534 * 119.99592 * 16 15 14 21 21 C 1.54039 * 113.92550 * 197.32167 * 9 7 2 22 22 O 1.44186 * 85.51301 * 91.66277 * 21 9 7 23 23 C 1.44172 * 93.33879 * 24.19254 * 22 21 9 24 24 H 0.96999 * 119.99789 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47287 * 293.51496 * 10 9 7 26 26 H 1.09003 * 109.47004 * 173.51847 * 10 9 7 27 27 H 1.08004 * 119.99914 * 359.97438 * 14 12 11 28 28 H 1.07996 * 120.00504 * 359.97438 * 15 14 12 29 29 H 1.09006 * 110.01853 * 358.60287 * 16 15 14 30 30 H 1.09000 * 110.48799 * 335.78249 * 17 16 15 31 31 H 1.09004 * 110.48431 * 98.42680 * 17 16 15 32 32 H 1.09002 * 110.76082 * 279.62963 * 18 17 16 33 33 H 1.08994 * 110.75883 * 156.25629 * 18 17 16 34 34 H 1.08999 * 110.48952 * 203.38097 * 19 18 17 35 35 H 1.08993 * 110.60054 * 80.78622 * 19 18 17 36 36 H 1.09003 * 110.03396 * 238.57013 * 20 16 15 37 37 H 1.09005 * 110.03145 * 359.95284 * 20 16 15 38 38 H 1.08996 * 113.86842 * 205.80944 * 21 9 7 39 39 H 1.08996 * 113.86342 * 337.51907 * 21 9 7 40 40 H 1.08999 * 113.86771 * 221.65794 * 23 22 21 41 41 H 1.09001 * 113.98075 * 89.96702 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0792 -1.1972 0.1082 9 6 1.2585 -2.4949 -0.1492 10 6 0.5842 -2.6435 -1.5145 11 8 1.5658 -2.4367 -2.5642 12 6 1.1310 -2.5343 -3.8365 13 8 -0.0366 -2.7849 -4.0621 14 6 2.0689 -2.3378 -4.9506 15 6 1.6395 -2.4336 -6.2066 16 6 2.6015 -2.2326 -7.3491 17 6 2.1026 -1.0969 -8.2663 18 6 2.4729 -1.5710 -9.6936 19 6 2.1998 -3.0943 -9.6295 20 6 2.6634 -3.5025 -8.2158 21 6 2.0676 -3.7324 0.2829 22 8 1.4700 -3.5300 1.5794 23 6 0.3355 -2.8229 1.0395 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2107 -1.9038 -1.6096 26 1 0.1618 -3.6443 -1.6040 27 1 3.1064 -2.1147 -4.7501 28 1 0.6020 -2.6563 -6.4071 29 1 3.5932 -1.9944 -6.9644 30 1 1.0233 -0.9769 -8.1723 31 1 2.6133 -0.1634 -8.0299 32 1 3.5243 -1.3757 -9.9050 33 1 1.8335 -1.0949 -10.4369 34 1 2.7815 -3.6185 -10.3878 35 1 1.1368 -3.2990 -9.7563 36 1 3.6852 -3.8802 -8.2524 37 1 1.9982 -4.2646 -7.8095 38 1 1.7570 -4.6554 -0.2067 39 1 3.1469 -3.5813 0.2664 40 1 0.0410 -1.9506 1.6230 41 1 -0.5052 -3.4664 0.7804 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346635294.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:23 Heat of formation + Delta-G solvation = -101.546042 kcal Electronic energy + Delta-G solvation = -21779.046504 eV Core-core repulsion = 18431.994655 eV Total energy + Delta-G solvation = -3347.051849 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.75778 -39.06063 -38.47365 -35.68116 -33.33811 -32.87729 -29.99519 -28.90796 -28.45942 -25.47221 -25.29164 -24.41659 -22.61251 -20.90155 -20.01636 -19.31672 -18.94011 -17.09967 -16.58551 -16.01088 -15.64680 -15.44851 -15.18019 -14.83410 -14.37031 -14.34143 -14.02530 -13.72930 -13.57758 -12.71981 -12.34347 -12.13132 -11.88962 -11.82439 -11.62000 -11.37006 -11.29149 -11.27315 -10.99390 -10.89106 -10.75617 -10.70778 -10.45322 -10.13093 -9.91167 -9.53323 -9.41831 -9.30274 -9.03464 -8.74587 -8.28869 -6.16369 -4.18760 1.41087 3.27187 3.33816 3.36956 3.43710 3.51800 4.34919 4.36200 4.43755 4.52087 4.90592 5.03191 5.10919 5.19351 5.21181 5.30694 5.39088 5.43993 5.44966 5.51465 5.66818 5.67787 5.83204 5.91937 5.98278 6.06949 6.07689 6.11045 6.20472 6.32356 6.37028 6.44906 6.49845 6.58923 6.99557 7.14691 7.29462 7.36049 7.40236 7.79992 8.19469 8.51565 8.78154 9.44768 10.92216 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019763 B = 0.003983 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.430692 B = 7028.302328 C = 7890.074568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.485 4.485 8 H 0.066 0.934 9 C 0.033 3.967 10 C 0.083 3.917 11 O -0.325 6.325 12 C 0.483 3.517 13 O -0.530 6.530 14 C -0.179 4.179 15 C -0.066 4.066 16 C -0.070 4.070 17 C -0.118 4.118 18 C -0.125 4.125 19 C -0.126 4.126 20 C -0.118 4.118 21 C 0.028 3.972 22 O -0.388 6.388 23 C 0.050 3.950 24 H 0.264 0.736 25 H 0.084 0.916 26 H 0.036 0.964 27 H 0.136 0.864 28 H 0.127 0.873 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.437 -4.182 -16.409 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.523 4.523 8 H 0.084 0.916 9 C 0.032 3.968 10 C 0.009 3.991 11 O -0.240 6.240 12 C 0.329 3.671 13 O -0.423 6.423 14 C -0.198 4.198 15 C -0.084 4.084 16 C -0.089 4.089 17 C -0.156 4.156 18 C -0.163 4.163 19 C -0.163 4.163 20 C -0.155 4.155 21 C -0.049 4.049 22 O -0.307 6.307 23 C -0.027 4.027 24 H 0.074 0.926 25 H 0.102 0.898 26 H 0.055 0.945 27 H 0.154 0.846 28 H 0.144 0.856 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.022 -4.196 -16.122 17.138 hybrid contribution 0.104 0.936 -0.092 0.946 sum 4.126 -3.260 -16.215 17.046 Atomic orbital electron populations 1.69891 1.05943 1.27196 1.49645 1.24954 0.94932 0.99329 0.94382 0.86473 0.79915 0.82812 0.78180 1.20544 1.21208 1.19672 1.20555 0.93432 0.88332 1.49937 0.91585 1.21108 0.92635 0.94610 0.88439 1.23434 0.91030 0.98745 0.85868 1.86639 1.43016 1.80173 1.14143 1.21528 0.87125 0.73764 0.84674 1.90775 1.19294 1.46080 1.86185 1.22110 1.00103 1.06618 0.90953 1.23781 1.00166 0.91517 0.92954 1.21049 0.98167 0.95908 0.93751 1.22430 1.01699 0.97494 0.93950 1.22509 1.01336 0.95670 0.96742 1.22384 1.01320 0.95992 0.96616 1.22190 1.01840 0.96908 0.94573 1.24096 0.99246 0.97384 0.84182 1.89489 1.37260 1.77743 1.26228 1.23916 0.88521 0.94305 0.95975 0.92585 0.89753 0.94531 0.84648 0.85571 0.89810 0.91010 0.91165 0.91425 0.91506 0.91689 0.91519 0.91327 0.91251 0.92870 0.90373 0.88204 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.36 11.31 55.43 0.63 -23.74 16 2 C 0.07 1.78 5.25 -17.82 -0.09 1.69 16 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.49 -12.98 7.92 -34.44 -0.27 -13.25 16 8 H 0.07 1.77 7.82 -52.49 -0.41 1.36 16 9 C 0.03 0.80 0.62 -154.58 -0.10 0.70 16 10 C 0.08 1.98 4.68 37.16 0.17 2.15 16 11 O -0.33 -7.40 9.83 -40.77 -0.40 -7.80 16 12 C 0.48 9.84 7.91 34.26 0.27 10.11 16 13 O -0.53 -11.90 16.01 -19.29 -0.31 -12.21 16 14 C -0.18 -2.75 9.76 -37.85 -0.37 -3.12 16 15 C -0.07 -0.84 7.98 -36.10 -0.29 -1.13 16 16 C -0.07 -0.68 3.25 -90.65 -0.29 -0.98 16 17 C -0.12 -1.06 6.35 -25.07 -0.16 -1.22 16 18 C -0.13 -0.92 6.91 -24.74 -0.17 -1.10 16 19 C -0.13 -0.93 6.83 -25.07 -0.17 -1.11 16 20 C -0.12 -1.00 6.45 -25.61 -0.17 -1.16 16 21 C 0.03 0.61 8.35 37.61 0.31 0.93 16 22 O -0.39 -9.35 12.40 -35.23 -0.44 -9.78 16 23 C 0.05 1.19 7.91 37.60 0.30 1.49 16 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.08 2.23 7.21 -51.93 -0.37 1.85 16 26 H 0.04 0.81 8.04 -51.93 -0.42 0.39 16 27 H 0.14 1.83 7.88 -52.48 -0.41 1.41 16 28 H 0.13 1.71 7.49 -52.49 -0.39 1.32 16 29 H 0.08 0.77 7.84 -51.93 -0.41 0.36 16 30 H 0.07 0.68 7.85 -51.93 -0.41 0.27 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.62 7.67 -51.93 -0.40 0.23 16 38 H 0.05 1.04 8.03 -51.93 -0.42 0.63 16 39 H 0.08 1.65 8.09 -51.93 -0.42 1.23 16 40 H 0.10 2.56 7.36 -51.93 -0.38 2.18 16 41 H 0.05 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 341.14 15.07 5.14 5.14 Total: -1.00 -29.77 341.14 -7.96 -37.73 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.53 Total: 0.65 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -1.03 Total: -5.99 kcal Atomic # 7 Polarization: -24.36 SS G_CDS: 0.63 Total: -23.74 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -1.15 Total: -29.79 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.77 -7.96 -37.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346635294.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.812 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds