Wall clock time and date at job start Tue Mar 31 2020 01:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99907 * 2 1 4 4 H 1.48495 * 109.46993 * 269.99817 * 3 2 1 5 5 H 1.48494 * 109.47154 * 29.99850 * 3 2 1 6 6 H 1.48501 * 109.46788 * 150.00104 * 3 2 1 7 7 C 1.37881 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00060 * 186.60818 * 7 2 1 9 9 C 1.50698 * 119.99716 * 6.61266 * 7 2 1 10 10 C 1.52998 * 112.99759 * 65.39615 * 9 7 2 11 11 O 1.45199 * 109.47408 * 53.51738 * 10 9 7 12 12 C 1.34801 * 116.99957 * 179.97438 * 11 10 9 13 13 O 1.21528 * 120.00141 * 0.02562 * 12 11 10 14 14 C 1.46956 * 119.99965 * 180.02562 * 12 11 10 15 15 C 1.33080 * 119.99851 * 180.02562 * 14 12 11 16 16 C 1.50702 * 119.99756 * 180.02562 * 15 14 12 17 17 C 1.54268 * 110.03160 * 237.16504 * 16 15 14 18 18 C 1.54887 * 104.19611 * 217.10331 * 17 16 15 19 19 C 1.54893 * 102.74953 * 37.94244 * 18 17 16 20 20 C 1.53872 * 110.03534 * 119.99592 * 16 15 14 21 21 C 1.54039 * 113.92550 * 197.32167 * 9 7 2 22 22 O 1.44186 * 85.51301 * 91.66277 * 21 9 7 23 23 C 1.44172 * 93.33879 * 24.19254 * 22 21 9 24 24 H 0.96999 * 119.99789 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47287 * 293.51496 * 10 9 7 26 26 H 1.09003 * 109.47004 * 173.51847 * 10 9 7 27 27 H 1.08004 * 119.99914 * 359.97438 * 14 12 11 28 28 H 1.07996 * 120.00504 * 359.97438 * 15 14 12 29 29 H 1.09006 * 110.01853 * 358.60287 * 16 15 14 30 30 H 1.09000 * 110.48799 * 335.78249 * 17 16 15 31 31 H 1.09004 * 110.48431 * 98.42680 * 17 16 15 32 32 H 1.09002 * 110.76082 * 279.62963 * 18 17 16 33 33 H 1.08994 * 110.75883 * 156.25629 * 18 17 16 34 34 H 1.08999 * 110.48952 * 203.38097 * 19 18 17 35 35 H 1.08993 * 110.60054 * 80.78622 * 19 18 17 36 36 H 1.09003 * 110.03396 * 238.57013 * 20 16 15 37 37 H 1.09005 * 110.03145 * 359.95284 * 20 16 15 38 38 H 1.08996 * 113.86842 * 205.80944 * 21 9 7 39 39 H 1.08996 * 113.86342 * 337.51907 * 21 9 7 40 40 H 1.08999 * 113.86771 * 221.65794 * 23 22 21 41 41 H 1.09001 * 113.98075 * 89.96702 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0792 -1.1972 0.1082 9 6 1.2585 -2.4949 -0.1492 10 6 0.5842 -2.6435 -1.5145 11 8 1.5658 -2.4367 -2.5642 12 6 1.1310 -2.5343 -3.8365 13 8 -0.0366 -2.7849 -4.0621 14 6 2.0689 -2.3378 -4.9506 15 6 1.6395 -2.4336 -6.2066 16 6 2.6015 -2.2326 -7.3491 17 6 2.1026 -1.0969 -8.2663 18 6 2.4729 -1.5710 -9.6936 19 6 2.1998 -3.0943 -9.6295 20 6 2.6634 -3.5025 -8.2158 21 6 2.0676 -3.7324 0.2829 22 8 1.4700 -3.5300 1.5794 23 6 0.3355 -2.8229 1.0395 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2107 -1.9038 -1.6096 26 1 0.1618 -3.6443 -1.6040 27 1 3.1064 -2.1147 -4.7501 28 1 0.6020 -2.6563 -6.4071 29 1 3.5932 -1.9944 -6.9644 30 1 1.0233 -0.9769 -8.1723 31 1 2.6133 -0.1634 -8.0299 32 1 3.5243 -1.3757 -9.9050 33 1 1.8335 -1.0949 -10.4369 34 1 2.7815 -3.6185 -10.3878 35 1 1.1368 -3.2990 -9.7563 36 1 3.6852 -3.8802 -8.2524 37 1 1.9982 -4.2646 -7.8095 38 1 1.7570 -4.6554 -0.2067 39 1 3.1469 -3.5813 0.2664 40 1 0.0410 -1.9506 1.6230 41 1 -0.5052 -3.4664 0.7804 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346635294.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:23 Heat of formation + Delta-G solvation = -117.363337 kcal Electronic energy + Delta-G solvation = -21779.732393 eV Core-core repulsion = 18431.994655 eV Total energy + Delta-G solvation = -3347.737738 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.47856 -40.77718 -39.31024 -37.37626 -34.89032 -34.42225 -31.87865 -29.55695 -29.42552 -27.36338 -27.13320 -26.19030 -23.99378 -21.51641 -21.18159 -20.84892 -20.37469 -18.63814 -18.33807 -17.53684 -17.34216 -16.73798 -16.53593 -16.29484 -16.19299 -16.02067 -15.62078 -14.61828 -14.51094 -14.21623 -14.03443 -13.83164 -13.53260 -12.99025 -12.88424 -12.71138 -12.62093 -12.36042 -12.27092 -11.95676 -11.90266 -11.84510 -11.77308 -11.52762 -11.39323 -11.30159 -11.28078 -10.92591 -10.71504 -10.43510 -10.21444 -8.19379 -6.27442 0.13572 1.41231 1.42682 1.52105 1.92141 2.02609 2.40728 2.99756 3.21581 3.55255 3.69808 3.77331 3.92427 4.07963 4.16143 4.25660 4.38047 4.44312 4.47274 4.56216 4.57254 4.63341 4.64318 4.66846 4.74091 4.85215 4.99322 5.10600 5.10723 5.18041 5.23896 5.24873 5.33327 5.40027 5.46274 5.47732 5.50211 5.51963 5.68298 5.72071 6.22092 6.71016 6.86716 7.38367 8.87908 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019763 B = 0.003983 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.430692 B = 7028.302328 C = 7890.074568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.501 4.501 8 H 0.059 0.941 9 C 0.017 3.983 10 C 0.094 3.906 11 O -0.338 6.338 12 C 0.477 3.523 13 O -0.561 6.561 14 C -0.206 4.206 15 C -0.029 4.029 16 C -0.071 4.071 17 C -0.121 4.121 18 C -0.120 4.120 19 C -0.125 4.125 20 C -0.117 4.117 21 C 0.037 3.963 22 O -0.402 6.402 23 C 0.054 3.946 24 H 0.263 0.737 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.156 0.844 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.956 -4.391 -18.286 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.779 3.221 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.016 3.984 10 C 0.020 3.980 11 O -0.253 6.253 12 C 0.326 3.674 13 O -0.456 6.456 14 C -0.224 4.224 15 C -0.047 4.047 16 C -0.089 4.089 17 C -0.159 4.159 18 C -0.158 4.158 19 C -0.162 4.162 20 C -0.155 4.155 21 C -0.039 4.039 22 O -0.321 6.321 23 C -0.023 4.023 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.174 0.826 28 H 0.134 0.866 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.556 -4.413 -18.005 19.353 hybrid contribution -0.399 0.964 0.390 1.114 sum 5.157 -3.449 -17.615 18.676 Atomic orbital electron populations 1.69995 1.06986 1.27646 1.50307 1.25625 0.95652 1.02146 0.94210 0.85617 0.78960 0.79367 0.78163 1.20264 1.20959 1.19078 1.20790 0.93322 0.89737 1.49986 0.92263 1.21186 0.93375 0.95037 0.88806 1.23124 0.90357 0.98237 0.86266 1.86633 1.42830 1.80751 1.15074 1.22425 0.87682 0.72619 0.84708 1.90749 1.20771 1.47810 1.86292 1.22088 1.00185 1.10317 0.89831 1.24078 1.00305 0.87204 0.93141 1.21183 0.97770 0.97147 0.92790 1.22467 1.01199 0.97330 0.94908 1.22505 1.02134 0.95485 0.95656 1.22401 1.01413 0.96185 0.96246 1.22210 1.02605 0.95853 0.94791 1.24195 0.99445 0.97369 0.82884 1.89461 1.37462 1.77746 1.27419 1.23827 0.89180 0.94017 0.95312 0.92755 0.93109 0.93265 0.82620 0.86583 0.88570 0.91911 0.90781 0.90395 0.90767 0.90266 0.91829 0.89936 0.92039 0.90041 0.89591 0.90595 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.88 11.31 21.45 0.24 -50.63 16 2 C 0.02 1.28 5.25 84.66 0.44 1.72 16 3 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.50 -26.96 7.92 25.60 0.20 -26.76 16 8 H 0.06 3.19 7.82 -2.91 -0.02 3.16 16 9 C 0.02 0.81 0.62 -52.23 -0.03 0.78 16 10 C 0.09 4.55 4.68 71.98 0.34 4.88 16 11 O -0.34 -15.49 9.83 -57.13 -0.56 -16.05 16 12 C 0.48 19.58 7.91 70.11 0.55 20.14 16 13 O -0.56 -25.67 16.01 19.74 0.32 -25.35 16 14 C -0.21 -6.14 9.76 23.40 0.23 -5.91 16 15 C -0.03 -0.70 7.98 24.53 0.20 -0.50 16 16 C -0.07 -1.21 3.25 -10.82 -0.04 -1.24 16 17 C -0.12 -1.90 6.35 31.67 0.20 -1.70 16 18 C -0.12 -1.44 6.91 31.89 0.22 -1.21 16 19 C -0.12 -1.52 6.83 31.67 0.22 -1.30 16 20 C -0.12 -1.68 6.45 31.32 0.20 -1.48 16 21 C 0.04 1.60 8.35 72.28 0.60 2.20 16 22 O -0.40 -19.05 12.40 -148.98 -1.85 -20.90 16 23 C 0.05 2.57 7.91 72.27 0.57 3.15 16 24 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 25 H 0.05 2.76 7.21 -2.39 -0.02 2.75 16 26 H 0.05 2.19 8.04 -2.39 -0.02 2.17 16 27 H 0.16 3.95 7.88 -2.91 -0.02 3.93 16 28 H 0.12 3.09 7.49 -2.91 -0.02 3.07 16 29 H 0.10 1.48 7.84 -2.38 -0.02 1.46 16 30 H 0.06 1.09 7.85 -2.39 -0.02 1.07 16 31 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 0.99 7.67 -2.38 -0.02 0.97 16 38 H 0.08 3.01 8.03 -2.39 -0.02 2.99 16 39 H 0.09 3.50 8.09 -2.39 -0.02 3.48 16 40 H 0.08 3.98 7.36 -2.39 -0.02 3.97 16 41 H 0.07 2.93 8.10 -2.39 -0.02 2.91 16 Total: -1.00 -64.16 341.14 5.08 -59.07 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 1.00 Total: 15.88 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 3.91 Total: -7.23 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.24 Total: -50.63 kcal Atomic # 8 Polarization: -60.20 SS G_CDS: -2.09 Total: -62.29 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -64.16 5.08 -59.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346635294.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.291 kcal (2) G-P(sol) polarization free energy of solvation -64.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds