Wall clock time and date at job start Tue Mar 31 2020 01:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00638 * 2 1 4 4 H 1.48501 * 109.47103 * 271.94854 * 3 2 1 5 5 H 1.48503 * 109.47214 * 31.94271 * 3 2 1 6 6 H 1.48493 * 109.47494 * 151.94714 * 3 2 1 7 7 C 1.37881 * 119.99562 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00123 * 353.30514 * 7 2 1 9 9 C 1.50706 * 119.99963 * 173.30114 * 7 2 1 10 10 C 1.52998 * 112.99618 * 84.66583 * 9 7 2 11 11 O 1.45205 * 109.47212 * 53.66342 * 10 9 7 12 12 C 1.34796 * 116.99794 * 175.06721 * 11 10 9 13 13 O 1.21534 * 120.00389 * 5.12887 * 12 11 10 14 14 C 1.46950 * 119.99883 * 185.13488 * 12 11 10 15 15 C 1.33076 * 120.00195 * 187.21759 * 14 12 11 16 16 C 1.50700 * 119.99943 * 16.33760 * 15 14 12 17 17 C 1.54267 * 110.03449 * 248.89737 * 16 15 14 18 18 C 1.54960 * 104.16098 * 217.13835 * 17 16 15 19 19 C 1.54885 * 102.78181 * 37.88797 * 18 17 16 20 20 C 1.53883 * 110.03101 * 131.68211 * 16 15 14 21 21 C 1.54032 * 113.92377 * 216.59992 * 9 7 2 22 22 O 1.44172 * 85.51819 * 91.66015 * 21 9 7 23 23 C 1.44179 * 93.34125 * 24.19120 * 22 21 9 24 24 H 0.97004 * 119.99489 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47221 * 293.65832 * 10 9 7 26 26 H 1.09010 * 109.46711 * 173.65935 * 10 9 7 27 27 H 1.08001 * 120.00071 * 7.21591 * 14 12 11 28 28 H 1.08009 * 120.00242 * 196.33822 * 15 14 12 29 29 H 1.08998 * 110.01786 * 10.28930 * 16 15 14 30 30 H 1.09002 * 110.48578 * 335.78843 * 17 16 15 31 31 H 1.08997 * 110.48479 * 98.42715 * 17 16 15 32 32 H 1.09003 * 110.72315 * 279.57113 * 18 17 16 33 33 H 1.09003 * 110.76488 * 156.22548 * 18 17 16 34 34 H 1.08996 * 110.49039 * 203.40302 * 19 18 17 35 35 H 1.09000 * 110.59498 * 80.81499 * 19 18 17 36 36 H 1.08997 * 110.02862 * 238.56680 * 20 16 15 37 37 H 1.09000 * 110.02998 * 0.02562 * 20 16 15 38 38 H 1.09005 * 113.86131 * 205.80512 * 21 9 7 39 39 H 1.09002 * 113.86686 * 337.51163 * 21 9 7 40 40 H 1.09003 * 113.86358 * 221.65924 * 23 22 21 41 41 H 1.08999 * 113.98311 * 89.97171 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4556 2.0701 -1.3993 5 1 1.4680 2.6404 0.7407 6 1 3.5667 1.4284 0.6584 7 6 2.0044 -1.1941 0.0005 8 1 1.4699 -2.1262 0.1100 9 6 3.5038 -1.1988 -0.1517 10 6 4.2397 -0.9875 1.1729 11 8 3.7750 -1.9605 2.1454 12 6 4.3987 -1.9774 3.3402 13 8 5.2418 -1.1407 3.5976 14 6 4.0595 -3.0077 4.3316 15 6 4.5666 -2.9416 5.5602 16 6 5.1747 -1.6550 6.0561 17 6 6.7011 -1.8168 6.2104 18 6 7.0427 -0.9977 7.4807 19 6 5.8352 -1.2835 8.4077 20 6 4.6242 -1.3156 7.4525 21 6 4.0436 -2.3784 -0.9821 22 8 3.9240 -1.4908 -2.1119 23 6 4.0154 -0.3049 -1.2970 24 1 -0.4849 0.8401 0.0004 25 1 4.0414 0.0187 1.5423 26 1 5.3113 -1.1128 1.0171 27 1 3.3984 -3.8185 4.0632 28 1 4.5425 -3.8100 6.2019 29 1 4.9535 -0.8453 5.3607 30 1 6.9611 -2.8659 6.3517 31 1 7.2177 -1.4085 5.3419 32 1 7.1082 0.0652 7.2482 33 1 7.9690 -1.3532 7.9322 34 1 5.7208 -0.4862 9.1420 35 1 5.9536 -2.2457 8.9060 36 1 4.1367 -0.3409 7.4348 37 1 3.9176 -2.0818 7.7715 38 1 5.0714 -2.6520 -0.7432 39 1 3.3706 -3.2349 -1.0210 40 1 3.3199 0.4832 -1.5858 41 1 5.0336 0.0565 -1.1532 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346635296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:26 Heat of formation + Delta-G solvation = -74.792922 kcal Electronic energy + Delta-G solvation = -22320.716004 eV Core-core repulsion = 18974.824258 eV Total energy + Delta-G solvation = -3345.891747 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.17458 -39.49550 -38.19705 -35.87612 -33.26473 -32.82441 -30.67154 -28.73487 -28.30621 -25.98792 -25.52383 -24.46607 -22.80740 -20.72895 -20.33725 -19.47447 -18.93731 -17.27258 -16.43438 -16.21081 -15.93192 -15.75727 -15.40603 -15.01540 -14.64387 -14.09678 -13.84790 -13.74869 -13.42472 -13.04284 -12.88062 -12.75540 -12.20388 -11.99221 -11.80603 -11.23608 -11.15412 -11.08977 -10.87415 -10.78370 -10.72735 -10.50012 -10.43097 -10.21663 -10.12460 -9.56410 -9.42115 -9.19762 -9.17009 -8.70359 -8.58062 -6.20830 -4.19609 1.27910 3.12451 3.18868 3.25546 3.27200 3.35325 4.24822 4.54011 4.56247 4.61480 4.64082 5.01021 5.07653 5.13393 5.35312 5.36875 5.49841 5.54592 5.57384 5.61838 5.67201 5.75672 5.79649 5.83718 5.85869 5.95994 5.98527 6.02005 6.17245 6.18177 6.22934 6.26590 6.34130 6.38400 6.60964 6.64132 6.94153 6.98657 7.17018 7.54448 8.28905 8.39707 8.84183 9.38681 10.91857 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022744 B = 0.004405 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.799164 B = 6355.537932 C = 6704.614043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.077 3.923 3 Si 0.865 3.135 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.256 1.256 7 C -0.484 4.484 8 H 0.086 0.914 9 C -0.005 4.005 10 C 0.068 3.932 11 O -0.320 6.320 12 C 0.482 3.518 13 O -0.519 6.519 14 C -0.191 4.191 15 C -0.053 4.053 16 C -0.097 4.097 17 C -0.105 4.105 18 C -0.126 4.126 19 C -0.124 4.124 20 C -0.119 4.119 21 C 0.041 3.959 22 O -0.370 6.370 23 C 0.021 3.979 24 H 0.267 0.733 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.141 0.859 28 H 0.130 0.870 29 H 0.117 0.883 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.549 -3.988 13.452 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.126 4.126 3 Si 0.694 3.306 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.181 1.181 7 C -0.521 4.521 8 H 0.104 0.896 9 C -0.006 4.006 10 C -0.006 4.006 11 O -0.235 6.235 12 C 0.329 3.671 13 O -0.413 6.413 14 C -0.210 4.210 15 C -0.071 4.071 16 C -0.115 4.115 17 C -0.143 4.143 18 C -0.163 4.163 19 C -0.162 4.162 20 C -0.157 4.157 21 C -0.036 4.036 22 O -0.288 6.288 23 C -0.056 4.056 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.159 0.841 28 H 0.147 0.853 29 H 0.134 0.866 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.535 -3.655 13.187 17.897 hybrid contribution 0.359 1.035 0.168 1.109 sum 11.894 -2.620 13.355 18.075 Atomic orbital electron populations 1.69863 1.06101 1.27134 1.49255 1.24940 0.94736 0.98684 0.94270 0.87339 0.80825 0.84352 0.78051 1.20040 1.21579 1.18081 1.20322 0.86284 0.95315 1.50174 0.89601 1.21636 0.98481 0.92347 0.88186 1.23866 0.96352 0.91175 0.89183 1.86705 1.57298 1.56519 1.22964 1.21674 0.79087 0.83298 0.83016 1.90687 1.33107 1.38979 1.78506 1.22102 1.04687 1.00600 0.93566 1.23843 0.91380 0.97461 0.94462 1.21600 0.95394 0.96919 0.97585 1.22253 0.94463 0.99641 0.97944 1.22523 0.97588 1.00388 0.95815 1.22368 0.95027 1.01214 0.97544 1.22245 0.97695 1.01676 0.94056 1.23975 0.98394 0.95623 0.85603 1.89565 1.94237 1.16867 1.28168 1.24279 0.98875 0.91032 0.91427 0.92323 0.91192 0.93451 0.84129 0.85276 0.86570 0.92112 0.90958 0.91493 0.91844 0.91941 0.91833 0.91597 0.91763 0.92389 0.89405 0.89564 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 2 C 0.08 2.15 5.42 -17.82 -0.10 2.05 16 3 Si 0.86 20.79 23.77 -169.99 -4.04 16.75 16 4 H -0.27 -6.37 6.62 56.52 0.37 -6.00 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -5.72 4.89 56.52 0.28 -5.45 16 7 C -0.48 -13.23 8.61 -34.44 -0.30 -13.53 16 8 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 9 C -0.01 -0.12 0.51 -154.58 -0.08 -0.20 16 10 C 0.07 1.46 4.61 37.16 0.17 1.64 16 11 O -0.32 -6.73 9.84 -40.75 -0.40 -7.13 16 12 C 0.48 8.79 7.67 34.26 0.26 9.05 16 13 O -0.52 -9.97 12.83 -19.29 -0.25 -10.22 16 14 C -0.19 -2.66 10.12 -37.85 -0.38 -3.05 16 15 C -0.05 -0.61 8.45 -36.10 -0.31 -0.92 16 16 C -0.10 -1.20 2.37 -90.65 -0.21 -1.42 16 17 C -0.11 -1.19 6.24 -25.03 -0.16 -1.35 16 18 C -0.13 -1.20 6.91 -24.70 -0.17 -1.37 16 19 C -0.12 -1.10 6.83 -25.07 -0.17 -1.27 16 20 C -0.12 -1.23 6.45 -25.61 -0.17 -1.40 16 21 C 0.04 0.85 8.35 37.61 0.31 1.16 16 22 O -0.37 -8.48 12.40 -35.23 -0.44 -8.92 16 23 C 0.02 0.46 6.67 37.61 0.25 0.71 16 24 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.07 1.58 5.45 -51.93 -0.28 1.30 16 26 H 0.05 0.92 8.01 -51.92 -0.42 0.50 16 27 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 29 H 0.12 1.83 5.13 -51.94 -0.27 1.56 16 30 H 0.06 0.61 7.85 -51.93 -0.41 0.21 16 31 H 0.07 0.94 7.91 -51.93 -0.41 0.52 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 38 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 39 H 0.09 1.79 8.09 -51.93 -0.42 1.37 16 40 H 0.09 2.01 3.94 -51.93 -0.20 1.81 16 41 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 LS Contribution 324.00 15.07 4.88 4.88 Total: -1.00 -30.62 324.00 -6.82 -37.44 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.31 Total: 2.79 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -1.04 Total: -9.89 kcal Atomic # 7 Polarization: -26.48 SS G_CDS: 0.77 Total: -25.71 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -1.09 Total: -26.27 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.04 Total: 16.75 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.62 -6.82 -37.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346635296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.352 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds