Wall clock time and date at job start Tue Mar 31 2020 01:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00638 * 2 1 4 4 H 1.48501 * 109.47103 * 271.94854 * 3 2 1 5 5 H 1.48503 * 109.47214 * 31.94271 * 3 2 1 6 6 H 1.48493 * 109.47494 * 151.94714 * 3 2 1 7 7 C 1.37881 * 119.99562 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00123 * 353.30514 * 7 2 1 9 9 C 1.50706 * 119.99963 * 173.30114 * 7 2 1 10 10 C 1.52998 * 112.99618 * 84.66583 * 9 7 2 11 11 O 1.45205 * 109.47212 * 53.66342 * 10 9 7 12 12 C 1.34796 * 116.99794 * 175.06721 * 11 10 9 13 13 O 1.21534 * 120.00389 * 5.12887 * 12 11 10 14 14 C 1.46950 * 119.99883 * 185.13488 * 12 11 10 15 15 C 1.33076 * 120.00195 * 187.21759 * 14 12 11 16 16 C 1.50700 * 119.99943 * 16.33760 * 15 14 12 17 17 C 1.54267 * 110.03449 * 248.89737 * 16 15 14 18 18 C 1.54960 * 104.16098 * 217.13835 * 17 16 15 19 19 C 1.54885 * 102.78181 * 37.88797 * 18 17 16 20 20 C 1.53883 * 110.03101 * 131.68211 * 16 15 14 21 21 C 1.54032 * 113.92377 * 216.59992 * 9 7 2 22 22 O 1.44172 * 85.51819 * 91.66015 * 21 9 7 23 23 C 1.44179 * 93.34125 * 24.19120 * 22 21 9 24 24 H 0.97004 * 119.99489 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47221 * 293.65832 * 10 9 7 26 26 H 1.09010 * 109.46711 * 173.65935 * 10 9 7 27 27 H 1.08001 * 120.00071 * 7.21591 * 14 12 11 28 28 H 1.08009 * 120.00242 * 196.33822 * 15 14 12 29 29 H 1.08998 * 110.01786 * 10.28930 * 16 15 14 30 30 H 1.09002 * 110.48578 * 335.78843 * 17 16 15 31 31 H 1.08997 * 110.48479 * 98.42715 * 17 16 15 32 32 H 1.09003 * 110.72315 * 279.57113 * 18 17 16 33 33 H 1.09003 * 110.76488 * 156.22548 * 18 17 16 34 34 H 1.08996 * 110.49039 * 203.40302 * 19 18 17 35 35 H 1.09000 * 110.59498 * 80.81499 * 19 18 17 36 36 H 1.08997 * 110.02862 * 238.56680 * 20 16 15 37 37 H 1.09000 * 110.02998 * 0.02562 * 20 16 15 38 38 H 1.09005 * 113.86131 * 205.80512 * 21 9 7 39 39 H 1.09002 * 113.86686 * 337.51163 * 21 9 7 40 40 H 1.09003 * 113.86358 * 221.65924 * 23 22 21 41 41 H 1.08999 * 113.98311 * 89.97171 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4556 2.0701 -1.3993 5 1 1.4680 2.6404 0.7407 6 1 3.5667 1.4284 0.6584 7 6 2.0044 -1.1941 0.0005 8 1 1.4699 -2.1262 0.1100 9 6 3.5038 -1.1988 -0.1517 10 6 4.2397 -0.9875 1.1729 11 8 3.7750 -1.9605 2.1454 12 6 4.3987 -1.9774 3.3402 13 8 5.2418 -1.1407 3.5976 14 6 4.0595 -3.0077 4.3316 15 6 4.5666 -2.9416 5.5602 16 6 5.1747 -1.6550 6.0561 17 6 6.7011 -1.8168 6.2104 18 6 7.0427 -0.9977 7.4807 19 6 5.8352 -1.2835 8.4077 20 6 4.6242 -1.3156 7.4525 21 6 4.0436 -2.3784 -0.9821 22 8 3.9240 -1.4908 -2.1119 23 6 4.0154 -0.3049 -1.2970 24 1 -0.4849 0.8401 0.0004 25 1 4.0414 0.0187 1.5423 26 1 5.3113 -1.1128 1.0171 27 1 3.3984 -3.8185 4.0632 28 1 4.5425 -3.8100 6.2019 29 1 4.9535 -0.8453 5.3607 30 1 6.9611 -2.8659 6.3517 31 1 7.2177 -1.4085 5.3419 32 1 7.1082 0.0652 7.2482 33 1 7.9690 -1.3532 7.9322 34 1 5.7208 -0.4862 9.1420 35 1 5.9536 -2.2457 8.9060 36 1 4.1367 -0.3409 7.4348 37 1 3.9176 -2.0818 7.7715 38 1 5.0714 -2.6520 -0.7432 39 1 3.3706 -3.2349 -1.0210 40 1 3.3199 0.4832 -1.5858 41 1 5.0336 0.0565 -1.1532 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346635296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:25 Heat of formation + Delta-G solvation = -94.041510 kcal Electronic energy + Delta-G solvation = -22321.550686 eV Core-core repulsion = 18974.824258 eV Total energy + Delta-G solvation = -3346.726428 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.71541 -41.04900 -39.20486 -37.31958 -34.89280 -34.29190 -32.51615 -29.54862 -29.28188 -27.69581 -27.29556 -26.26541 -24.09618 -21.51493 -21.33480 -21.06702 -20.41501 -18.79185 -18.18852 -17.95427 -17.30703 -17.14891 -16.59493 -16.37974 -16.27031 -15.71764 -15.26357 -14.91374 -14.80017 -14.39505 -14.20451 -14.05738 -13.82614 -13.51014 -12.86896 -12.72320 -12.34961 -12.26686 -12.15904 -12.00663 -11.95090 -11.87921 -11.80210 -11.71379 -11.45083 -11.36548 -11.05607 -10.67307 -10.65213 -10.43442 -10.22317 -8.36572 -6.39477 0.16540 1.20805 1.27015 1.34681 1.91461 2.01108 2.22882 2.76044 3.12334 3.51344 3.70135 3.75599 3.82321 3.97498 4.08270 4.25096 4.25540 4.29122 4.37937 4.47261 4.54393 4.56523 4.58634 4.67405 4.74572 4.75812 4.86112 4.92153 5.01198 5.10058 5.13596 5.21345 5.28274 5.30172 5.33369 5.42534 5.48772 5.52667 5.57003 5.82956 6.20655 6.62404 6.89833 7.22423 8.80001 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022744 B = 0.004405 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.799164 B = 6355.537932 C = 6704.614043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.020 3.980 3 Si 0.919 3.081 4 H -0.259 1.259 5 H -0.295 1.295 6 H -0.229 1.229 7 C -0.484 4.484 8 H 0.042 0.958 9 C -0.020 4.020 10 C 0.075 3.925 11 O -0.344 6.344 12 C 0.474 3.526 13 O -0.536 6.536 14 C -0.221 4.221 15 C -0.019 4.019 16 C -0.107 4.107 17 C -0.104 4.104 18 C -0.124 4.124 19 C -0.118 4.118 20 C -0.118 4.118 21 C 0.050 3.950 22 O -0.390 6.390 23 C 0.023 3.977 24 H 0.267 0.733 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.157 0.843 28 H 0.174 0.826 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.184 -4.492 15.314 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.178 4.178 3 Si 0.745 3.255 4 H -0.185 1.185 5 H -0.222 1.222 6 H -0.152 1.152 7 C -0.522 4.522 8 H 0.060 0.940 9 C -0.021 4.021 10 C 0.000 4.000 11 O -0.259 6.259 12 C 0.323 3.677 13 O -0.430 6.430 14 C -0.239 4.239 15 C -0.037 4.037 16 C -0.125 4.125 17 C -0.141 4.141 18 C -0.162 4.162 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.026 4.026 22 O -0.309 6.309 23 C -0.053 4.053 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.174 0.826 28 H 0.191 0.809 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.199 -4.174 15.051 21.109 hybrid contribution -0.457 1.097 -0.319 1.231 sum 13.743 -3.077 14.732 20.380 Atomic orbital electron populations 1.70015 1.08050 1.28074 1.51697 1.25755 0.95425 1.02537 0.94098 0.86435 0.80628 0.79491 0.78955 1.18464 1.22207 1.15231 1.20461 0.88993 0.93588 1.49149 0.94001 1.21600 0.95837 0.94777 0.89921 1.23607 0.97371 0.90630 0.88343 1.86709 1.58490 1.56542 1.24196 1.22465 0.78707 0.83898 0.82671 1.90691 1.33862 1.39908 1.78504 1.22180 1.07515 1.00485 0.93738 1.24292 0.87675 0.98044 0.93669 1.21602 0.96649 0.96166 0.98085 1.22231 0.93162 1.00855 0.97887 1.22527 0.98904 0.99525 0.95238 1.22362 0.93470 1.02584 0.97110 1.22242 0.98679 1.01599 0.93053 1.24088 1.00355 0.94448 0.83756 1.89541 1.94621 1.17637 1.29121 1.24390 1.00715 0.90321 0.89891 0.92370 0.92788 0.90846 0.82585 0.80860 0.90378 0.90346 0.93383 0.92614 0.90072 0.91110 0.89961 0.92737 0.90146 0.88358 0.90101 0.91091 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.53 13.96 21.45 0.30 -58.23 16 2 C 0.02 1.15 5.42 84.66 0.46 1.60 16 3 Si 0.92 43.07 23.77 68.60 1.63 44.70 16 4 H -0.26 -11.45 6.62 99.48 0.66 -10.79 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.23 -9.64 4.89 99.48 0.49 -9.15 16 7 C -0.48 -27.35 8.61 25.60 0.22 -27.13 16 8 H 0.04 2.65 8.06 -2.91 -0.02 2.63 16 9 C -0.02 -0.92 0.51 -52.23 -0.03 -0.95 16 10 C 0.07 3.12 4.61 71.98 0.33 3.45 16 11 O -0.34 -14.49 9.84 -57.07 -0.56 -15.05 16 12 C 0.47 17.17 7.67 70.10 0.54 17.71 16 13 O -0.54 -20.53 12.83 19.73 0.25 -20.28 16 14 C -0.22 -5.87 10.12 23.40 0.24 -5.64 16 15 C -0.02 -0.39 8.45 24.53 0.21 -0.18 16 16 C -0.11 -2.48 2.37 -10.81 -0.03 -2.50 16 17 C -0.10 -2.14 6.24 31.69 0.20 -1.94 16 18 C -0.12 -2.08 6.91 31.91 0.22 -1.86 16 19 C -0.12 -1.70 6.83 31.67 0.22 -1.48 16 20 C -0.12 -2.16 6.45 31.32 0.20 -1.96 16 21 C 0.05 1.99 8.35 72.27 0.60 2.59 16 22 O -0.39 -17.31 12.40 -148.98 -1.85 -19.15 16 23 C 0.02 0.97 6.67 72.27 0.48 1.46 16 24 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 25 H 0.05 2.39 5.45 -2.39 -0.01 2.38 16 26 H 0.07 2.65 8.01 -2.38 -0.02 2.63 16 27 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 28 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 29 H 0.08 2.47 5.13 -2.50 -0.01 2.46 16 30 H 0.08 1.33 7.85 -2.39 -0.02 1.31 16 31 H 0.05 1.21 7.91 -2.39 -0.02 1.19 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.21 7.67 -2.39 -0.02 1.19 16 38 H 0.10 3.16 8.04 -2.38 -0.02 3.14 16 39 H 0.08 3.29 8.09 -2.39 -0.02 3.27 16 40 H 0.07 3.19 3.94 -2.39 -0.01 3.18 16 41 H 0.10 3.47 8.10 -2.39 -0.02 3.45 16 Total: -1.00 -70.14 324.00 4.38 -65.76 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.75 Total: 19.07 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 3.86 Total: -16.82 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.30 Total: -58.23 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: -2.16 Total: -54.48 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.63 Total: 44.70 kcal Total: -70.14 4.38 -65.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346635296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.283 kcal (2) G-P(sol) polarization free energy of solvation -70.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds