Wall clock time and date at job start Tue Mar 31 2020 01:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99805 * 2 1 4 4 C 1.53003 * 109.47229 * 123.99524 * 3 2 1 5 5 C 1.50702 * 112.84751 * 296.84462 * 4 3 2 6 6 O 1.20827 * 119.99772 * 234.37322 * 5 4 3 7 7 O 1.34225 * 120.00129 * 54.37297 * 5 4 3 8 8 C 1.45197 * 116.99793 * 174.73775 * 7 5 4 9 9 C 1.53004 * 109.47073 * 184.87748 * 8 7 5 10 10 C 1.50706 * 112.99660 * 285.53386 * 9 8 7 11 11 H 1.08001 * 120.00068 * 114.51984 * 10 9 8 12 12 C 1.37876 * 120.00051 * 294.51617 * 10 9 8 13 13 N 1.31523 * 119.99800 * 357.03438 * 12 10 9 14 14 Si 1.86794 * 120.00235 * 177.03416 * 12 10 9 15 15 H 1.48504 * 109.46760 * 60.00009 * 14 12 10 16 16 H 1.48503 * 109.47492 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47337 * 300.00278 * 14 12 10 18 18 C 1.54034 * 113.81719 * 153.54806 * 9 8 7 19 19 O 1.44183 * 85.51351 * 223.19273 * 18 9 8 20 20 C 1.44169 * 93.34035 * 24.19486 * 19 18 9 21 21 C 1.53781 * 113.68990 * 68.11306 * 4 3 2 22 22 C 1.53789 * 87.07995 * 89.12795 * 21 4 3 23 23 C 1.53774 * 87.08083 * 25.43033 * 22 21 4 24 24 H 1.08000 * 119.99646 * 180.02562 * 1 2 3 25 25 H 1.07992 * 120.00347 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99889 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.47074 * 3.99555 * 3 2 1 28 28 H 1.08999 * 109.47185 * 243.99483 * 3 2 1 29 29 H 1.09004 * 109.47502 * 64.87611 * 8 7 5 30 30 H 1.09001 * 109.46949 * 304.87271 * 8 7 5 31 31 H 0.96999 * 119.99759 * 185.01646 * 13 12 10 32 32 H 1.08989 * 113.86419 * 337.34008 * 18 9 8 33 33 H 1.09000 * 113.86140 * 109.04783 * 18 9 8 34 34 H 1.09006 * 113.86075 * 221.65692 * 20 19 18 35 35 H 1.08999 * 113.86750 * 89.95595 * 20 19 18 36 36 H 1.09005 * 113.61150 * 203.67343 * 21 4 3 37 37 H 1.08997 * 113.61264 * 334.57763 * 21 4 3 38 38 H 1.09002 * 113.61088 * 270.88434 * 22 21 4 39 39 H 1.08996 * 113.68621 * 139.99158 * 22 21 4 40 40 H 1.09006 * 113.61605 * 220.01640 * 23 22 21 41 41 H 1.09002 * 113.69247 * 89.12648 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0170 1.3436 1.1960 5 6 2.2975 1.3014 2.5195 6 8 2.5034 2.1579 3.3465 7 8 1.4281 0.3124 2.7796 8 6 0.8607 0.2680 4.1154 9 6 -0.0048 -0.9854 4.2604 10 6 -1.3225 -0.8779 3.5368 11 1 -1.5318 -1.5242 2.6972 12 6 -2.2607 0.0455 3.9467 13 7 -2.0301 0.7921 5.0047 14 14 -3.8595 0.2361 2.9997 15 1 -4.5968 -1.0529 3.0088 16 1 -4.6918 1.2864 3.6395 17 1 -3.5611 0.6258 1.5981 18 6 -0.1275 -1.4923 5.7097 19 8 0.0657 -2.8056 5.1468 20 6 0.7511 -2.2987 3.9842 21 6 4.1776 0.3399 1.0934 22 6 4.9630 1.4427 0.3641 23 6 4.0748 2.4561 1.1049 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5400 0.9352 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3572 2.1324 0.0716 28 1 2.6353 1.3945 -0.9236 29 1 0.2474 1.1540 4.2794 30 1 1.6647 0.2413 4.8509 31 1 -2.7187 1.3894 5.3362 32 1 0.6842 -1.1678 6.3605 33 1 -1.1141 -1.3411 6.1477 34 1 0.4614 -2.7870 3.0537 35 1 1.8312 -2.2204 4.1082 36 1 4.6040 0.0654 2.0583 37 1 3.9538 -0.5238 0.4673 38 1 4.8166 1.4415 -0.7161 39 1 6.0139 1.4931 0.6488 40 1 3.7681 3.3008 0.4880 41 1 4.4720 2.7611 2.0730 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346637571.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:40 Heat of formation + Delta-G solvation = -61.687096 kcal Electronic energy + Delta-G solvation = -23406.022079 eV Core-core repulsion = 20060.698644 eV Total energy + Delta-G solvation = -3345.323435 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.57512 -39.28553 -38.06972 -35.56484 -33.89496 -32.92833 -29.95928 -28.35283 -25.85004 -25.56104 -25.32897 -24.73366 -23.78826 -21.01424 -19.62261 -19.00457 -18.25996 -17.05795 -16.58889 -15.93113 -15.65307 -15.21518 -14.86126 -14.49673 -14.33494 -14.17960 -14.14980 -13.60437 -13.20901 -12.73870 -12.38559 -12.05914 -11.97203 -11.81088 -11.70119 -11.57163 -11.05157 -10.96741 -10.91607 -10.80083 -10.48891 -10.42963 -10.18035 -10.05126 -9.84936 -9.44284 -9.28847 -9.04870 -8.79436 -8.68566 -8.33271 -6.16136 -4.20974 2.73055 2.90735 3.26240 3.31414 3.33499 3.44401 4.32721 4.43067 4.53658 4.73036 4.80116 4.90395 5.18006 5.18806 5.46600 5.50017 5.53881 5.59716 5.73302 5.81969 5.86240 5.91667 6.04648 6.08783 6.12967 6.17493 6.18492 6.33454 6.34984 6.43252 6.46382 6.64037 7.00607 7.10064 7.18222 7.26244 7.30124 7.42034 7.42162 7.78979 8.20380 8.54057 8.76475 9.42860 10.91156 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.006588 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.369261 B = 4249.309205 C = 4801.130192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.163 4.163 3 C -0.060 4.060 4 C -0.075 4.075 5 C 0.466 3.534 6 O -0.524 6.524 7 O -0.326 6.326 8 C 0.079 3.921 9 C 0.038 3.962 10 C -0.483 4.483 11 H 0.065 0.935 12 C 0.066 3.934 13 N -0.890 5.890 14 Si 0.895 3.105 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.050 3.950 19 O -0.391 6.391 20 C 0.034 3.966 21 C -0.119 4.119 22 C -0.140 4.140 23 C -0.118 4.118 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.033 0.967 31 H 0.265 0.735 32 H 0.046 0.954 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.310 0.811 -9.470 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.181 4.181 3 C -0.097 4.097 4 C -0.076 4.076 5 C 0.309 3.691 6 O -0.415 6.415 7 O -0.241 6.241 8 C 0.005 3.995 9 C 0.037 3.963 10 C -0.521 4.521 11 H 0.083 0.917 12 C -0.137 4.137 13 N -0.528 5.528 14 Si 0.723 3.277 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.027 4.027 19 O -0.309 6.309 20 C -0.043 4.043 21 C -0.157 4.157 22 C -0.177 4.177 23 C -0.155 4.155 24 H 0.116 0.884 25 H 0.107 0.893 26 H 0.125 0.875 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.174 0.979 -9.030 13.639 hybrid contribution -0.945 0.488 -0.049 1.065 sum 9.229 1.468 -9.080 13.029 Atomic orbital electron populations 1.23699 0.95695 1.01727 0.97784 1.22473 0.95843 0.97096 1.02674 1.20440 0.96976 0.97153 0.95169 1.21876 0.94097 1.00186 0.91468 1.23288 0.77350 0.79682 0.88780 1.90592 1.63031 1.38931 1.48916 1.86548 1.52981 1.48009 1.36521 1.23549 0.94400 1.04103 0.77444 1.21041 0.94295 0.87916 0.93052 1.20556 0.98173 1.18398 1.14927 0.91662 1.24961 0.98655 0.94789 0.95253 1.69859 1.34098 1.25687 1.23155 0.86586 0.82945 0.77894 0.80298 1.20099 1.21270 1.19908 1.23912 1.00690 0.81240 0.96906 1.89485 1.76421 1.27907 1.37137 1.23935 0.94717 0.95924 0.89683 1.22911 0.94285 0.96976 1.01497 1.22832 0.98868 0.96278 0.99711 1.22955 0.94737 0.96026 1.01809 0.88423 0.89312 0.87540 0.91104 0.90264 0.89346 0.94895 0.92462 0.93563 0.88553 0.90511 0.93030 0.89803 0.90050 0.89760 0.91014 0.90772 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 14.21 29.01 0.41 -2.04 16 2 C -0.16 -2.35 7.52 -36.03 -0.27 -2.62 16 3 C -0.06 -0.79 5.03 -27.88 -0.14 -0.93 16 4 C -0.08 -1.07 0.92 -154.85 -0.14 -1.21 16 5 C 0.47 9.04 6.96 36.01 0.25 9.30 16 6 O -0.52 -11.62 15.69 -18.75 -0.29 -11.92 16 7 O -0.33 -6.90 8.28 -39.25 -0.33 -7.23 16 8 C 0.08 1.86 4.82 37.16 0.18 2.03 16 9 C 0.04 0.90 0.58 -154.58 -0.09 0.81 16 10 C -0.48 -12.56 8.31 -34.44 -0.29 -12.85 16 11 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 12 C 0.07 1.73 5.17 -17.82 -0.09 1.64 16 13 N -0.89 -24.17 11.26 55.43 0.62 -23.55 16 14 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 C 0.05 1.18 7.93 37.61 0.30 1.48 16 19 O -0.39 -9.33 12.40 -35.23 -0.44 -9.77 16 20 C 0.03 0.75 8.10 37.61 0.30 1.05 16 21 C -0.12 -1.39 7.07 -25.91 -0.18 -1.58 16 22 C -0.14 -1.33 7.73 -25.92 -0.20 -1.53 16 23 C -0.12 -1.43 6.96 -25.92 -0.18 -1.61 16 24 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 25 H 0.09 1.47 7.84 -52.49 -0.41 1.06 16 26 H 0.11 1.43 7.43 -52.49 -0.39 1.04 16 27 H 0.07 0.99 7.79 -51.93 -0.40 0.58 16 28 H 0.08 0.82 7.31 -51.93 -0.38 0.44 16 29 H 0.09 2.37 6.79 -51.93 -0.35 2.02 16 30 H 0.03 0.75 7.83 -51.93 -0.41 0.34 16 31 H 0.27 6.98 8.32 -40.82 -0.34 6.64 16 32 H 0.05 1.01 7.92 -51.94 -0.41 0.60 16 33 H 0.10 2.45 7.50 -51.93 -0.39 2.06 16 34 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 35 H 0.05 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 37 H 0.08 0.86 7.26 -51.93 -0.38 0.48 16 38 H 0.08 0.68 7.60 -51.93 -0.39 0.29 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 41 H 0.09 1.27 7.51 -51.93 -0.39 0.88 16 LS Contribution 337.27 15.07 5.08 5.08 Total: -1.00 -29.07 337.27 -6.89 -35.96 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.38 Total: 3.84 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -0.14 Total: -8.07 kcal Atomic # 7 Polarization: -24.17 SS G_CDS: 0.62 Total: -23.55 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -1.06 Total: -28.92 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.07 -6.89 -35.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346637571.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.729 kcal (2) G-P(sol) polarization free energy of solvation -29.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds