Wall clock time and date at job start Tue Mar 31 2020 01:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99805 * 2 1 4 4 C 1.53003 * 109.47229 * 123.99524 * 3 2 1 5 5 C 1.50702 * 112.84751 * 296.84462 * 4 3 2 6 6 O 1.20827 * 119.99772 * 234.37322 * 5 4 3 7 7 O 1.34225 * 120.00129 * 54.37297 * 5 4 3 8 8 C 1.45197 * 116.99793 * 174.73775 * 7 5 4 9 9 C 1.53004 * 109.47073 * 184.87748 * 8 7 5 10 10 C 1.50706 * 112.99660 * 285.53386 * 9 8 7 11 11 H 1.08001 * 120.00068 * 114.51984 * 10 9 8 12 12 C 1.37876 * 120.00051 * 294.51617 * 10 9 8 13 13 N 1.31523 * 119.99800 * 357.03438 * 12 10 9 14 14 Si 1.86794 * 120.00235 * 177.03416 * 12 10 9 15 15 H 1.48504 * 109.46760 * 60.00009 * 14 12 10 16 16 H 1.48503 * 109.47492 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47337 * 300.00278 * 14 12 10 18 18 C 1.54034 * 113.81719 * 153.54806 * 9 8 7 19 19 O 1.44183 * 85.51351 * 223.19273 * 18 9 8 20 20 C 1.44169 * 93.34035 * 24.19486 * 19 18 9 21 21 C 1.53781 * 113.68990 * 68.11306 * 4 3 2 22 22 C 1.53789 * 87.07995 * 89.12795 * 21 4 3 23 23 C 1.53774 * 87.08083 * 25.43033 * 22 21 4 24 24 H 1.08000 * 119.99646 * 180.02562 * 1 2 3 25 25 H 1.07992 * 120.00347 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99889 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.47074 * 3.99555 * 3 2 1 28 28 H 1.08999 * 109.47185 * 243.99483 * 3 2 1 29 29 H 1.09004 * 109.47502 * 64.87611 * 8 7 5 30 30 H 1.09001 * 109.46949 * 304.87271 * 8 7 5 31 31 H 0.96999 * 119.99759 * 185.01646 * 13 12 10 32 32 H 1.08989 * 113.86419 * 337.34008 * 18 9 8 33 33 H 1.09000 * 113.86140 * 109.04783 * 18 9 8 34 34 H 1.09006 * 113.86075 * 221.65692 * 20 19 18 35 35 H 1.08999 * 113.86750 * 89.95595 * 20 19 18 36 36 H 1.09005 * 113.61150 * 203.67343 * 21 4 3 37 37 H 1.08997 * 113.61264 * 334.57763 * 21 4 3 38 38 H 1.09002 * 113.61088 * 270.88434 * 22 21 4 39 39 H 1.08996 * 113.68621 * 139.99158 * 22 21 4 40 40 H 1.09006 * 113.61605 * 220.01640 * 23 22 21 41 41 H 1.09002 * 113.69247 * 89.12648 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0170 1.3436 1.1960 5 6 2.2975 1.3014 2.5195 6 8 2.5034 2.1579 3.3465 7 8 1.4281 0.3124 2.7796 8 6 0.8607 0.2680 4.1154 9 6 -0.0048 -0.9854 4.2604 10 6 -1.3225 -0.8779 3.5368 11 1 -1.5318 -1.5242 2.6972 12 6 -2.2607 0.0455 3.9467 13 7 -2.0301 0.7921 5.0047 14 14 -3.8595 0.2361 2.9997 15 1 -4.5968 -1.0529 3.0088 16 1 -4.6918 1.2864 3.6395 17 1 -3.5611 0.6258 1.5981 18 6 -0.1275 -1.4923 5.7097 19 8 0.0657 -2.8056 5.1468 20 6 0.7511 -2.2987 3.9842 21 6 4.1776 0.3399 1.0934 22 6 4.9630 1.4427 0.3641 23 6 4.0748 2.4561 1.1049 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5400 0.9352 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3572 2.1324 0.0716 28 1 2.6353 1.3945 -0.9236 29 1 0.2474 1.1540 4.2794 30 1 1.6647 0.2413 4.8509 31 1 -2.7187 1.3894 5.3362 32 1 0.6842 -1.1678 6.3605 33 1 -1.1141 -1.3411 6.1477 34 1 0.4614 -2.7870 3.0537 35 1 1.8312 -2.2204 4.1082 36 1 4.6040 0.0654 2.0583 37 1 3.9538 -0.5238 0.4673 38 1 4.8166 1.4415 -0.7161 39 1 6.0139 1.4931 0.6488 40 1 3.7681 3.3008 0.4880 41 1 4.4720 2.7611 2.0730 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346637571.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:40 Heat of formation + Delta-G solvation = -77.355676 kcal Electronic energy + Delta-G solvation = -23406.701520 eV Core-core repulsion = 20060.698644 eV Total energy + Delta-G solvation = -3346.002876 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.95465 -41.05500 -39.43318 -37.24674 -35.04654 -34.89161 -31.84684 -29.50129 -27.45814 -27.15102 -26.69785 -26.36748 -25.29616 -22.32653 -20.90863 -20.78673 -19.49629 -18.48143 -18.29546 -17.62576 -17.27673 -16.76912 -16.44336 -16.21841 -16.07535 -15.92950 -15.21919 -14.80443 -14.54890 -14.45416 -13.83011 -13.71347 -13.43086 -13.31379 -12.86020 -12.81262 -12.75076 -12.66485 -12.34377 -12.16275 -11.92284 -11.86484 -11.69109 -11.46335 -11.23073 -11.15131 -10.96714 -10.88824 -10.64431 -10.24214 -9.98179 -8.18014 -6.27715 1.27555 1.40677 1.41397 1.48054 1.62894 1.94294 2.39099 2.99437 3.22547 3.38382 3.53924 3.75277 3.86990 3.88722 4.18230 4.24520 4.33865 4.42187 4.45095 4.46813 4.58502 4.62670 4.68288 4.78558 4.80989 4.88854 4.95032 5.06340 5.14513 5.17470 5.20147 5.22540 5.24610 5.46110 5.50013 5.53916 5.73300 5.76349 5.91192 6.07515 6.23233 6.72350 6.92090 7.38459 8.88129 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.006588 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.369261 B = 4249.309205 C = 4801.130192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C -0.058 4.058 4 C -0.082 4.082 5 C 0.457 3.543 6 O -0.559 6.559 7 O -0.328 6.328 8 C 0.093 3.907 9 C 0.024 3.976 10 C -0.492 4.492 11 H 0.061 0.939 12 C 0.024 3.976 13 N -0.914 5.914 14 Si 0.946 3.054 15 H -0.271 1.271 16 H -0.288 1.288 17 H -0.268 1.268 18 C 0.052 3.948 19 O -0.403 6.403 20 C 0.046 3.954 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.122 4.122 24 H 0.092 0.908 25 H 0.075 0.925 26 H 0.123 0.877 27 H 0.056 0.944 28 H 0.121 0.879 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.263 0.737 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.136 0.250 -11.694 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.165 4.165 3 C -0.095 4.095 4 C -0.083 4.083 5 C 0.302 3.698 6 O -0.451 6.451 7 O -0.242 6.242 8 C 0.019 3.981 9 C 0.024 3.976 10 C -0.530 4.530 11 H 0.080 0.920 12 C -0.176 4.176 13 N -0.553 5.553 14 Si 0.772 3.228 15 H -0.196 1.196 16 H -0.213 1.213 17 H -0.193 1.193 18 C -0.025 4.025 19 O -0.323 6.323 20 C -0.030 4.030 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.159 4.159 24 H 0.110 0.890 25 H 0.093 0.907 26 H 0.141 0.859 27 H 0.075 0.925 28 H 0.139 0.861 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.129 0.871 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.008 0.407 -11.272 16.475 hybrid contribution -1.455 0.688 0.656 1.738 sum 10.553 1.095 -10.616 15.009 Atomic orbital electron populations 1.23656 0.96629 1.00932 1.00731 1.22734 0.95337 0.98470 0.99933 1.20515 0.96842 0.95810 0.96350 1.22234 0.94466 1.03112 0.88450 1.24566 0.76382 0.78373 0.90459 1.90571 1.63976 1.39971 1.50616 1.86567 1.53613 1.48964 1.35063 1.23112 0.93877 1.02158 0.78976 1.21089 0.94152 0.89216 0.93172 1.20779 0.99174 1.18162 1.14867 0.92043 1.25594 1.01380 0.94685 0.95933 1.69970 1.34723 1.26235 1.24332 0.85775 0.79840 0.77814 0.79363 1.19610 1.21346 1.19307 1.23833 1.00147 0.81363 0.97147 1.89459 1.76973 1.27889 1.37929 1.24009 0.95710 0.93897 0.89415 1.22993 0.92954 0.97746 1.01885 1.22813 0.98983 0.92938 1.00643 1.23014 0.94541 0.96650 1.01711 0.88980 0.90662 0.85930 0.92523 0.86058 0.93246 0.94692 0.92770 0.91766 0.90855 0.89575 0.90565 0.90742 0.88284 0.87058 0.89390 0.89491 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.80 14.21 67.78 0.96 -4.84 16 2 C -0.15 -3.93 7.52 25.64 0.19 -3.74 16 3 C -0.06 -1.37 5.03 29.85 0.15 -1.22 16 4 C -0.08 -2.14 0.92 -52.40 -0.05 -2.19 16 5 C 0.46 17.63 6.96 71.24 0.50 18.12 16 6 O -0.56 -25.27 15.69 21.96 0.34 -24.93 16 7 O -0.33 -13.84 8.28 -51.37 -0.43 -14.26 16 8 C 0.09 4.47 4.82 71.98 0.35 4.81 16 9 C 0.02 1.17 0.58 -52.23 -0.03 1.14 16 10 C -0.49 -25.86 8.31 25.60 0.21 -25.65 16 11 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 12 C 0.02 1.27 5.17 84.65 0.44 1.71 16 13 N -0.91 -51.01 11.26 21.45 0.24 -50.77 16 14 Si 0.95 42.90 29.54 68.60 2.03 44.93 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 C 0.05 2.50 7.93 72.27 0.57 3.07 16 19 O -0.40 -18.95 12.40 -148.98 -1.85 -20.80 16 20 C 0.05 1.94 8.10 72.27 0.59 2.52 16 21 C -0.12 -2.35 7.07 31.12 0.22 -2.13 16 22 C -0.12 -1.69 7.73 31.12 0.24 -1.45 16 23 C -0.12 -2.65 6.96 31.12 0.22 -2.43 16 24 H 0.09 2.96 8.06 -2.91 -0.02 2.94 16 25 H 0.07 2.54 7.84 -2.91 -0.02 2.52 16 26 H 0.12 2.89 7.43 -2.91 -0.02 2.87 16 27 H 0.06 1.50 7.79 -2.38 -0.02 1.48 16 28 H 0.12 1.89 7.31 -2.39 -0.02 1.88 16 29 H 0.05 2.75 6.79 -2.39 -0.02 2.73 16 30 H 0.03 1.62 7.83 -2.39 -0.02 1.60 16 31 H 0.26 14.22 8.32 -92.71 -0.77 13.45 16 32 H 0.06 2.80 7.92 -2.39 -0.02 2.79 16 33 H 0.07 3.82 7.50 -2.39 -0.02 3.81 16 34 H 0.09 3.44 8.09 -2.38 -0.02 3.42 16 35 H 0.08 2.83 8.10 -2.39 -0.02 2.81 16 36 H 0.07 1.63 8.09 -2.38 -0.02 1.61 16 37 H 0.10 1.63 7.26 -2.39 -0.02 1.62 16 38 H 0.11 1.09 7.60 -2.39 -0.02 1.07 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.09 1.65 8.10 -2.38 -0.02 1.63 16 41 H 0.07 1.92 7.51 -2.39 -0.02 1.91 16 Total: -1.00 -64.31 337.27 5.90 -58.41 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 1.00 Total: 19.68 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 4.56 Total: -12.27 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.24 Total: -50.77 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -1.93 Total: -59.99 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -64.31 5.90 -58.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346637571.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.944 kcal (2) G-P(sol) polarization free energy of solvation -64.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds