Wall clock time and date at job start Tue Mar 31 2020 01:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50696 * 120.00158 * 2 1 4 4 C 1.53004 * 109.47111 * 125.52565 * 3 2 1 5 5 C 1.52996 * 109.47087 * 174.51779 * 4 3 2 6 6 C 1.50700 * 109.47334 * 294.38735 * 5 4 3 7 7 C 1.30995 * 120.00170 * 124.99721 * 6 5 4 8 8 C 1.50703 * 109.46874 * 294.51630 * 4 3 2 9 9 O 1.20821 * 119.99946 * 239.99692 * 8 4 3 10 10 O 1.34227 * 119.99886 * 60.00334 * 8 4 3 11 11 C 1.45195 * 116.99980 * 179.97438 * 10 8 4 12 12 C 1.53001 * 109.47372 * 179.97438 * 11 10 8 13 13 C 1.50702 * 112.99378 * 53.55857 * 12 11 10 14 14 H 1.08003 * 120.00012 * 243.83058 * 13 12 11 15 15 C 1.37876 * 120.00251 * 63.84098 * 13 12 11 16 16 N 1.31522 * 119.99922 * 6.87254 * 15 13 12 17 17 Si 1.86800 * 120.00100 * 186.87986 * 15 13 12 18 18 H 1.48503 * 109.47287 * 59.99459 * 17 15 13 19 19 H 1.48504 * 109.47073 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47007 * 299.99577 * 17 15 13 21 21 C 1.54029 * 113.82184 * 281.57326 * 12 11 10 22 22 O 1.44171 * 85.52248 * 223.19327 * 21 12 11 23 23 C 1.44185 * 93.33782 * 24.18849 * 22 21 12 24 24 H 1.07998 * 120.00010 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.00142 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.00010 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46986 * 5.52527 * 3 2 1 28 28 H 1.09003 * 109.47216 * 245.52875 * 3 2 1 29 29 H 1.08993 * 109.46894 * 54.51805 * 4 3 2 30 30 H 1.09006 * 109.47228 * 54.38712 * 5 4 3 31 31 H 1.09002 * 109.47426 * 174.38710 * 5 4 3 32 32 H 1.08005 * 120.00016 * 305.00359 * 6 5 4 33 33 H 1.08000 * 119.99857 * 179.97438 * 7 6 5 34 34 H 1.08000 * 120.00262 * 0.02562 * 7 6 5 35 35 H 1.08996 * 109.47353 * 300.00141 * 11 10 8 36 36 H 1.09006 * 109.47349 * 59.99734 * 11 10 8 37 37 H 0.97002 * 119.99670 * 180.02562 * 16 15 13 38 38 H 1.09011 * 113.86248 * 337.34368 * 21 12 11 39 39 H 1.08999 * 113.86674 * 109.04158 * 21 12 11 40 40 H 1.08994 * 113.86551 * 221.65648 * 23 22 21 41 41 H 1.09001 * 113.86272 * 89.95475 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 6 3.0444 1.3276 1.1740 5 6 3.9045 2.5905 1.0957 6 6 4.7749 2.5301 -0.1330 7 6 4.7430 3.5053 -1.0069 8 6 2.2762 1.3226 2.4705 9 8 2.4037 2.2354 3.2518 10 8 1.4504 0.3040 2.7574 11 6 0.7434 0.3653 4.0241 12 6 -0.1435 -0.8724 4.1736 13 6 0.6123 -2.1636 3.9924 14 1 0.3705 -2.8199 3.1695 15 6 1.6122 -2.5071 4.8773 16 7 1.8166 -1.7793 5.9536 17 14 2.6769 -4.0062 4.5475 18 1 3.3857 -3.8350 3.2539 19 1 3.6713 -4.1571 5.6402 20 1 1.8204 -5.2177 4.4862 21 6 -1.4554 -0.7985 3.3700 22 8 -2.0784 -1.3379 4.5530 23 6 -1.0406 -0.8473 5.4255 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3592 2.1312 0.0990 28 1 2.6138 1.4069 -0.9354 29 1 3.6859 0.4476 1.1283 30 1 3.2589 3.4670 1.0409 31 1 4.5334 2.6574 1.9835 32 1 5.4251 1.6826 -0.2931 33 1 5.3671 3.4622 -1.8873 34 1 4.0932 4.3530 -0.8467 35 1 1.4639 0.3973 4.8413 36 1 0.1234 1.2615 4.0512 37 1 2.5204 -2.0208 6.5759 38 1 -1.7693 0.2177 3.1306 39 1 -1.4849 -1.4690 2.5112 40 1 -0.7413 -1.5566 6.1970 41 1 -1.2278 0.1539 5.8138 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346645724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:05 Heat of formation + Delta-G solvation = -69.243960 kcal Electronic energy + Delta-G solvation = -22951.119601 eV Core-core repulsion = 19605.468476 eV Total energy + Delta-G solvation = -3345.651126 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.01321 -39.11482 -36.72392 -35.52009 -34.08731 -32.88024 -30.99154 -29.84303 -26.34238 -25.55142 -25.30224 -24.53147 -22.99444 -20.12297 -19.59073 -19.51455 -18.93699 -16.89496 -16.54961 -15.80068 -15.72564 -15.17656 -14.90656 -14.59495 -14.44333 -14.33408 -14.03571 -13.77719 -13.23793 -12.97994 -12.50774 -12.40649 -11.91338 -11.85547 -11.55419 -11.52562 -11.09295 -10.99130 -10.91148 -10.80303 -10.65559 -10.44049 -10.03285 -9.91259 -9.59918 -9.38376 -9.35924 -9.03241 -8.86692 -8.73837 -8.29102 -6.16733 -4.18638 2.16001 2.65985 2.90919 3.26710 3.31580 3.33979 3.48214 4.33655 4.75321 4.86432 4.91140 4.97459 5.12078 5.18672 5.27734 5.47502 5.52005 5.57645 5.73166 5.77542 5.88143 5.98063 6.03341 6.08785 6.14477 6.21149 6.32055 6.32976 6.41878 6.52364 6.60064 6.67520 6.98790 7.01470 7.14571 7.15152 7.29279 7.37078 7.44120 7.79299 8.19865 8.55696 8.77590 9.44433 10.91809 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.016442 B = 0.005965 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.556413 B = 4693.051302 C = 5229.971167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.147 4.147 3 C -0.079 4.079 4 C -0.075 4.075 5 C -0.081 4.081 6 C -0.145 4.145 7 C -0.198 4.198 8 C 0.455 3.545 9 O -0.529 6.529 10 O -0.316 6.316 11 C 0.082 3.918 12 C 0.037 3.963 13 C -0.481 4.481 14 H 0.064 0.936 15 C 0.067 3.933 16 N -0.889 5.889 17 Si 0.896 3.104 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.031 3.969 22 O -0.390 6.390 23 C 0.048 3.952 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.033 0.967 37 H 0.265 0.735 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.058 6.749 -11.587 13.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.165 4.165 3 C -0.116 4.116 4 C -0.094 4.094 5 C -0.118 4.118 6 C -0.163 4.163 7 C -0.234 4.234 8 C 0.299 3.701 9 O -0.420 6.420 10 O -0.230 6.230 11 C 0.008 3.992 12 C 0.036 3.964 13 C -0.519 4.519 14 H 0.082 0.918 15 C -0.135 4.135 16 N -0.527 5.527 17 Si 0.723 3.277 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.046 4.046 22 O -0.309 6.309 23 C -0.029 4.029 24 H 0.105 0.895 25 H 0.116 0.884 26 H 0.129 0.871 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.125 0.875 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.128 0.872 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.932 6.842 -11.104 13.368 hybrid contribution 0.840 -0.574 0.177 1.033 sum 3.772 6.268 -10.926 13.149 Atomic orbital electron populations 1.23658 0.95880 1.01321 1.00680 1.22710 0.96142 0.97628 1.00008 1.20711 0.97335 0.96651 0.96920 1.21003 0.96637 1.00849 0.90894 1.20651 0.97121 0.96858 0.97155 1.22940 0.98681 0.99037 0.95646 1.23829 1.01971 0.98795 0.98827 1.23468 0.78373 0.80394 0.87904 1.90591 1.63956 1.37173 1.50264 1.86600 1.52412 1.43374 1.40604 1.23388 0.95318 0.97917 0.82582 1.21049 0.90101 0.94244 0.90994 1.20471 1.16622 1.02857 1.11920 0.91758 1.24936 0.97045 0.96972 0.94583 1.69886 1.32244 1.39543 1.11023 0.86584 0.80210 0.82925 0.77937 1.20076 1.21302 1.20108 1.24064 0.93450 0.96434 0.90626 1.89488 1.47373 1.75024 1.18983 1.23938 0.85522 0.97316 0.96103 0.89466 0.88439 0.87059 0.91475 0.89880 0.87463 0.90715 0.89788 0.87173 0.88581 0.88607 0.89803 0.94880 0.92571 0.93045 0.90482 0.88404 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 14.20 29.02 0.41 -2.09 16 2 C -0.15 -2.05 7.80 -36.03 -0.28 -2.33 16 3 C -0.08 -0.98 5.02 -27.88 -0.14 -1.12 16 4 C -0.07 -1.06 2.29 -91.77 -0.21 -1.27 16 5 C -0.08 -1.01 4.49 -27.88 -0.13 -1.14 16 6 C -0.15 -1.46 8.44 -36.02 -0.30 -1.76 16 7 C -0.20 -1.77 14.32 29.02 0.42 -1.35 16 8 C 0.46 8.76 7.24 36.01 0.26 9.02 16 9 O -0.53 -11.43 15.66 -18.75 -0.29 -11.72 16 10 O -0.32 -6.74 8.09 -39.25 -0.32 -7.06 16 11 C 0.08 1.89 4.65 37.16 0.17 2.06 16 12 C 0.04 0.87 0.62 -154.58 -0.10 0.78 16 13 C -0.48 -12.50 7.92 -34.44 -0.27 -12.77 16 14 H 0.06 1.68 7.82 -52.48 -0.41 1.27 16 15 C 0.07 1.76 5.26 -17.82 -0.09 1.67 16 16 N -0.89 -24.03 11.33 55.43 0.63 -23.40 16 17 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.03 0.67 8.35 37.60 0.31 0.98 16 22 O -0.39 -9.26 12.40 -35.23 -0.44 -9.70 16 23 C 0.05 1.14 7.93 37.61 0.30 1.44 16 24 H 0.09 1.15 7.84 -52.49 -0.41 0.73 16 25 H 0.10 1.35 8.06 -52.48 -0.42 0.93 16 26 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 27 H 0.07 0.84 7.79 -51.93 -0.40 0.44 16 28 H 0.08 0.87 7.24 -51.93 -0.38 0.49 16 29 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.07 0.95 7.79 -51.93 -0.40 0.54 16 31 H 0.08 1.15 7.93 -51.93 -0.41 0.73 16 32 H 0.11 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.10 0.83 7.84 -52.49 -0.41 0.42 16 35 H 0.08 2.18 7.10 -51.93 -0.37 1.81 16 36 H 0.03 0.72 8.04 -51.93 -0.42 0.31 16 37 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.05 1.00 8.03 -51.92 -0.42 0.58 16 39 H 0.08 1.58 8.09 -51.93 -0.42 1.16 16 40 H 0.10 2.48 7.50 -51.93 -0.39 2.10 16 41 H 0.05 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 346.67 15.07 5.22 5.22 Total: -1.00 -28.81 346.67 -6.38 -35.19 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.51 Total: 3.71 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 0.35 Total: -7.89 kcal Atomic # 7 Polarization: -24.03 SS G_CDS: 0.63 Total: -23.40 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -1.05 Total: -28.48 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.81 -6.38 -35.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346645724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.056 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds