Wall clock time and date at job start Tue Mar 31 2020 01:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50696 * 120.00158 * 2 1 4 4 C 1.53004 * 109.47111 * 125.52565 * 3 2 1 5 5 C 1.52996 * 109.47087 * 174.51779 * 4 3 2 6 6 C 1.50700 * 109.47334 * 294.38735 * 5 4 3 7 7 C 1.30995 * 120.00170 * 124.99721 * 6 5 4 8 8 C 1.50703 * 109.46874 * 294.51630 * 4 3 2 9 9 O 1.20821 * 119.99946 * 239.99692 * 8 4 3 10 10 O 1.34227 * 119.99886 * 60.00334 * 8 4 3 11 11 C 1.45195 * 116.99980 * 179.97438 * 10 8 4 12 12 C 1.53001 * 109.47372 * 179.97438 * 11 10 8 13 13 C 1.50702 * 112.99378 * 53.55857 * 12 11 10 14 14 H 1.08003 * 120.00012 * 243.83058 * 13 12 11 15 15 C 1.37876 * 120.00251 * 63.84098 * 13 12 11 16 16 N 1.31522 * 119.99922 * 6.87254 * 15 13 12 17 17 Si 1.86800 * 120.00100 * 186.87986 * 15 13 12 18 18 H 1.48503 * 109.47287 * 59.99459 * 17 15 13 19 19 H 1.48504 * 109.47073 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47007 * 299.99577 * 17 15 13 21 21 C 1.54029 * 113.82184 * 281.57326 * 12 11 10 22 22 O 1.44171 * 85.52248 * 223.19327 * 21 12 11 23 23 C 1.44185 * 93.33782 * 24.18849 * 22 21 12 24 24 H 1.07998 * 120.00010 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.00142 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.00010 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46986 * 5.52527 * 3 2 1 28 28 H 1.09003 * 109.47216 * 245.52875 * 3 2 1 29 29 H 1.08993 * 109.46894 * 54.51805 * 4 3 2 30 30 H 1.09006 * 109.47228 * 54.38712 * 5 4 3 31 31 H 1.09002 * 109.47426 * 174.38710 * 5 4 3 32 32 H 1.08005 * 120.00016 * 305.00359 * 6 5 4 33 33 H 1.08000 * 119.99857 * 179.97438 * 7 6 5 34 34 H 1.08000 * 120.00262 * 0.02562 * 7 6 5 35 35 H 1.08996 * 109.47353 * 300.00141 * 11 10 8 36 36 H 1.09006 * 109.47349 * 59.99734 * 11 10 8 37 37 H 0.97002 * 119.99670 * 180.02562 * 16 15 13 38 38 H 1.09011 * 113.86248 * 337.34368 * 21 12 11 39 39 H 1.08999 * 113.86674 * 109.04158 * 21 12 11 40 40 H 1.08994 * 113.86551 * 221.65648 * 23 22 21 41 41 H 1.09001 * 113.86272 * 89.95475 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 6 3.0444 1.3276 1.1740 5 6 3.9045 2.5905 1.0957 6 6 4.7749 2.5301 -0.1330 7 6 4.7430 3.5053 -1.0069 8 6 2.2762 1.3226 2.4705 9 8 2.4037 2.2354 3.2518 10 8 1.4504 0.3040 2.7574 11 6 0.7434 0.3653 4.0241 12 6 -0.1435 -0.8724 4.1736 13 6 0.6123 -2.1636 3.9924 14 1 0.3705 -2.8199 3.1695 15 6 1.6122 -2.5071 4.8773 16 7 1.8166 -1.7793 5.9536 17 14 2.6769 -4.0062 4.5475 18 1 3.3857 -3.8350 3.2539 19 1 3.6713 -4.1571 5.6402 20 1 1.8204 -5.2177 4.4862 21 6 -1.4554 -0.7985 3.3700 22 8 -2.0784 -1.3379 4.5530 23 6 -1.0406 -0.8473 5.4255 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3592 2.1312 0.0990 28 1 2.6138 1.4069 -0.9354 29 1 3.6859 0.4476 1.1283 30 1 3.2589 3.4670 1.0409 31 1 4.5334 2.6574 1.9835 32 1 5.4251 1.6826 -0.2931 33 1 5.3671 3.4622 -1.8873 34 1 4.0932 4.3530 -0.8467 35 1 1.4639 0.3973 4.8413 36 1 0.1234 1.2615 4.0512 37 1 2.5204 -2.0208 6.5759 38 1 -1.7693 0.2177 3.1306 39 1 -1.4849 -1.4690 2.5112 40 1 -0.7413 -1.5566 6.1970 41 1 -1.2278 0.1539 5.8138 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346645724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:04 Heat of formation + Delta-G solvation = -84.080719 kcal Electronic energy + Delta-G solvation = -22951.762971 eV Core-core repulsion = 19605.468476 eV Total energy + Delta-G solvation = -3346.294496 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.61585 -40.87434 -37.93934 -37.08982 -35.06254 -34.81533 -32.16558 -31.57496 -27.45424 -27.30880 -27.07727 -26.28752 -24.40069 -21.31067 -20.93023 -20.61826 -20.49577 -18.46431 -18.25728 -17.44809 -17.33657 -16.78254 -16.26159 -16.20550 -16.11475 -15.80643 -15.47267 -15.01161 -14.53657 -14.09907 -13.98805 -13.85343 -13.56272 -13.42606 -13.09016 -12.82361 -12.65068 -12.55649 -12.32679 -12.02248 -11.89380 -11.76762 -11.73153 -11.67536 -11.24633 -11.15834 -10.87078 -10.67308 -10.31327 -10.18343 -9.89949 -8.16599 -6.23545 1.31294 1.39422 1.43065 1.43572 1.50496 1.64547 2.02173 2.41940 3.02554 3.24259 3.63527 3.73363 3.94366 4.09130 4.19936 4.30337 4.35407 4.38470 4.45803 4.48783 4.50746 4.51918 4.62054 4.75596 4.80957 4.87826 5.01211 5.06803 5.17010 5.18658 5.22711 5.26888 5.47936 5.52816 5.74856 5.76570 5.82016 5.91377 5.94046 6.07914 6.25718 6.74456 6.95534 7.41718 8.90457 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.016442 B = 0.005965 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.556413 B = 4693.051302 C = 5229.971167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.154 4.154 3 C -0.070 4.070 4 C -0.067 4.067 5 C -0.074 4.074 6 C -0.158 4.158 7 C -0.182 4.182 8 C 0.448 3.552 9 O -0.557 6.557 10 O -0.322 6.322 11 C 0.094 3.906 12 C 0.024 3.976 13 C -0.491 4.491 14 H 0.059 0.941 15 C 0.025 3.975 16 N -0.912 5.912 17 Si 0.947 3.053 18 H -0.268 1.268 19 H -0.288 1.288 20 H -0.273 1.273 21 C 0.043 3.957 22 O -0.404 6.404 23 C 0.051 3.949 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.067 0.933 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.592 7.136 -13.803 15.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.172 4.172 3 C -0.107 4.107 4 C -0.086 4.086 5 C -0.111 4.111 6 C -0.176 4.176 7 C -0.218 4.218 8 C 0.293 3.707 9 O -0.450 6.450 10 O -0.236 6.236 11 C 0.019 3.981 12 C 0.023 3.977 13 C -0.529 4.529 14 H 0.077 0.923 15 C -0.175 4.175 16 N -0.550 5.550 17 Si 0.773 3.227 18 H -0.193 1.193 19 H -0.214 1.214 20 H -0.198 1.198 21 C -0.033 4.033 22 O -0.323 6.323 23 C -0.026 4.026 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.125 0.875 27 H 0.086 0.914 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.463 7.228 -13.340 15.562 hybrid contribution 0.663 -0.638 0.844 1.249 sum 4.126 6.590 -12.496 14.717 Atomic orbital electron populations 1.23763 0.96096 1.01642 1.00833 1.22847 0.96325 0.98182 0.99891 1.20696 0.96990 0.95857 0.97134 1.21162 0.96648 1.02220 0.88598 1.20578 0.96890 0.95699 0.97981 1.22826 0.99364 1.00443 0.94967 1.24039 1.01154 0.97935 0.98711 1.24556 0.77685 0.79240 0.89187 1.90573 1.64721 1.38063 1.51594 1.86615 1.52989 1.44493 1.39470 1.23038 0.94553 0.97933 0.82562 1.21094 0.91028 0.93698 0.91864 1.20683 1.16991 1.03649 1.11571 0.92315 1.25569 0.98131 0.99279 0.94478 1.69996 1.32602 1.40813 1.11633 0.85766 0.78780 0.80213 0.77908 1.19290 1.21379 1.19834 1.24133 0.91327 0.97912 0.89977 1.89462 1.47450 1.75586 1.19846 1.23852 0.85641 0.97508 0.95643 0.88670 0.88719 0.87472 0.91398 0.87032 0.86565 0.91061 0.91584 0.85986 0.86603 0.88442 0.93247 0.93975 0.92890 0.90506 0.89634 0.90845 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.91 14.20 67.79 0.96 -3.95 16 2 C -0.15 -4.02 7.80 25.65 0.20 -3.82 16 3 C -0.07 -1.58 5.02 29.85 0.15 -1.43 16 4 C -0.07 -1.82 2.29 -11.54 -0.03 -1.84 16 5 C -0.07 -1.75 4.49 29.85 0.13 -1.62 16 6 C -0.16 -2.76 8.44 25.65 0.22 -2.54 16 7 C -0.18 -2.65 14.32 67.79 0.97 -1.68 16 8 C 0.45 17.08 7.24 71.24 0.52 17.60 16 9 O -0.56 -24.28 15.66 21.98 0.34 -23.93 16 10 O -0.32 -13.62 8.09 -51.38 -0.42 -14.04 16 11 C 0.09 4.35 4.65 71.98 0.33 4.68 16 12 C 0.02 1.13 0.62 -52.23 -0.03 1.09 16 13 C -0.49 -25.55 7.92 25.60 0.20 -25.34 16 14 H 0.06 3.05 7.82 -2.91 -0.02 3.03 16 15 C 0.03 1.33 5.26 84.65 0.44 1.78 16 16 N -0.91 -50.16 11.33 21.45 0.24 -49.91 16 17 Si 0.95 42.30 29.54 68.60 2.03 44.33 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 19 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 C 0.04 1.78 8.35 72.27 0.60 2.38 16 22 O -0.40 -18.88 12.40 -148.98 -1.85 -20.73 16 23 C 0.05 2.40 7.93 72.27 0.57 2.97 16 24 H 0.09 2.32 7.84 -2.91 -0.02 2.30 16 25 H 0.09 2.51 8.06 -2.91 -0.02 2.49 16 26 H 0.11 2.87 8.06 -2.91 -0.02 2.84 16 27 H 0.07 1.54 7.79 -2.39 -0.02 1.53 16 28 H 0.11 1.93 7.24 -2.39 -0.02 1.91 16 29 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.07 1.71 7.79 -2.38 -0.02 1.69 16 31 H 0.07 1.78 7.93 -2.39 -0.02 1.76 16 32 H 0.12 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.12 1.28 8.06 -2.91 -0.02 1.25 16 34 H 0.10 1.40 7.84 -2.91 -0.02 1.38 16 35 H 0.05 2.63 7.10 -2.39 -0.02 2.61 16 36 H 0.04 1.84 8.04 -2.38 -0.02 1.82 16 37 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 38 H 0.08 2.80 8.03 -2.38 -0.02 2.78 16 39 H 0.09 3.38 8.09 -2.39 -0.02 3.36 16 40 H 0.07 3.81 7.50 -2.39 -0.02 3.80 16 41 H 0.06 2.78 8.10 -2.39 -0.02 2.76 16 Total: -1.00 -61.55 346.67 6.58 -54.97 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.98 Total: 21.05 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 5.25 Total: -11.73 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.24 Total: -49.91 kcal Atomic # 8 Polarization: -56.78 SS G_CDS: -1.92 Total: -58.70 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -61.55 6.58 -54.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346645724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.111 kcal (2) G-P(sol) polarization free energy of solvation -61.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds