Wall clock time and date at job start Tue Mar 31 2020 01:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47177 * 2 1 4 4 C 1.53011 * 109.46830 * 119.99565 * 2 1 3 5 5 C 1.53003 * 109.46770 * 65.83049 * 4 2 1 6 6 H 1.08996 * 109.46993 * 306.60603 * 5 4 2 7 7 C 1.52997 * 109.46586 * 186.61424 * 5 4 2 8 8 C 1.50689 * 109.47265 * 66.61302 * 5 4 2 9 9 O 1.20831 * 120.00254 * 359.97438 * 8 5 4 10 10 O 1.34228 * 120.00103 * 179.97438 * 8 5 4 11 11 C 1.45195 * 117.00302 * 180.02562 * 10 8 5 12 12 H 1.08999 * 109.47376 * 30.00109 * 11 10 8 13 13 C 1.50700 * 109.47521 * 150.00135 * 11 10 8 14 14 H 1.08001 * 119.99511 * 359.72621 * 13 11 10 15 15 C 1.37882 * 120.00438 * 179.97438 * 13 11 10 16 16 N 1.31513 * 119.99496 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00011 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47114 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47162 * 120.00198 * 17 15 13 20 20 H 1.48505 * 109.46938 * 239.99867 * 17 15 13 21 21 C 1.50710 * 109.47100 * 270.00165 * 11 10 8 22 22 C 1.34514 * 125.78735 * 144.99830 * 21 11 10 23 23 C 1.41383 * 106.83828 * 179.97438 * 22 21 11 24 24 C 1.34516 * 106.84179 * 0.02562 * 23 22 21 25 25 O 1.34300 * 125.78563 * 324.69204 * 21 11 10 26 26 H 1.09003 * 109.47131 * 294.87682 * 1 2 3 27 27 H 1.08997 * 109.46668 * 54.87103 * 1 2 3 28 28 H 1.08997 * 109.47212 * 174.86943 * 1 2 3 29 29 H 1.08994 * 109.47244 * 239.99590 * 2 1 3 30 30 H 1.09004 * 109.47054 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47220 * 299.99263 * 3 2 1 32 32 H 1.08994 * 109.47368 * 59.99666 * 3 2 1 33 33 H 1.09002 * 109.46843 * 305.82825 * 4 2 1 34 34 H 1.08996 * 109.46889 * 185.82746 * 4 2 1 35 35 H 1.09005 * 109.47508 * 55.01659 * 7 5 4 36 36 H 1.08998 * 109.47123 * 175.01576 * 7 5 4 37 37 H 1.08998 * 109.47461 * 295.01218 * 7 5 4 38 38 H 0.97001 * 119.99282 * 180.02562 * 16 15 13 39 39 H 1.08001 * 126.58162 * 0.03748 * 22 21 11 40 40 H 1.07998 * 126.58142 * 179.97438 * 23 22 21 41 41 H 1.07996 * 125.79024 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6531 -2.1998 1.1783 6 1 0.5802 -2.2867 1.0067 7 6 2.0158 -2.8857 2.4969 8 6 2.3979 -2.8601 0.0470 9 8 3.1598 -2.2143 -0.6331 10 8 2.2151 -4.1657 -0.2053 11 6 2.9659 -4.7352 -1.3099 12 1 3.9086 -4.1998 -1.4228 13 6 3.2446 -6.1897 -1.0311 14 1 2.8965 -6.6399 -0.1132 15 6 3.9485 -6.9445 -1.9455 16 7 4.3770 -6.3948 -3.0607 17 14 4.2933 -8.7476 -1.6001 18 1 3.7091 -9.1205 -0.2868 19 1 3.6848 -9.5813 -2.6678 20 1 5.7606 -8.9742 -1.5710 21 6 2.1630 -4.6119 -2.5794 22 6 2.6632 -4.3870 -3.8077 23 6 1.5641 -4.3458 -4.6962 24 6 0.4581 -4.5474 -3.9576 25 8 0.8275 -4.7137 -2.6770 26 1 -0.3633 0.4323 0.9323 27 1 -0.3632 0.5913 -0.8405 28 1 -0.3633 -1.0235 -0.0919 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4425 -0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.5939 -0.2711 2.1363 34 1 3.1249 -0.6317 1.3031 35 1 1.5470 -2.3533 3.3245 36 1 1.6607 -3.9161 2.4802 37 1 3.0981 -2.8765 2.6256 38 1 4.8718 -6.9259 -3.7042 39 1 3.7045 -4.2629 -4.0659 40 1 1.6047 -4.1828 -5.7630 41 1 -0.5546 -4.5760 -4.3316 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346707030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:58 Heat of formation + Delta-G solvation = -96.948359 kcal Electronic energy + Delta-G solvation = -22945.272905 eV Core-core repulsion = 19598.420426 eV Total energy + Delta-G solvation = -3346.852479 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33136 -39.83991 -36.95980 -35.31724 -33.38972 -32.79412 -31.67233 -29.57793 -27.09341 -26.70096 -26.45387 -24.11731 -22.49363 -20.61407 -20.24232 -19.61494 -19.06475 -17.25800 -16.65862 -16.39792 -15.60722 -15.06748 -14.86199 -14.75436 -14.45016 -14.13792 -13.47196 -13.05554 -12.98250 -12.60771 -12.35006 -12.15678 -11.94691 -11.81280 -11.69616 -11.58713 -11.53380 -11.31518 -11.16626 -11.10452 -10.96743 -10.57034 -10.36633 -10.35040 -10.29574 -9.97953 -9.43117 -9.37922 -8.82500 -8.63304 -7.23338 -6.20777 -4.39747 2.89137 2.97853 3.20179 3.26667 3.31098 3.58605 3.97549 4.20072 4.28038 4.78403 4.96824 5.05489 5.09381 5.27219 5.38172 5.45824 5.65513 5.70548 5.75475 5.85294 5.89531 5.92805 5.98610 6.00736 6.06983 6.08932 6.15456 6.31114 6.36791 6.43104 6.50285 6.62788 6.78323 7.01456 7.19693 7.25923 7.43690 7.70564 7.74144 7.88315 8.38646 8.54931 8.81838 9.27403 10.76562 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018326 B = 0.005855 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.542444 B = 4781.088700 C = 5654.572504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.141 4.141 4 C -0.096 4.096 5 C -0.089 4.089 6 H 0.103 0.897 7 C -0.142 4.142 8 C 0.457 3.543 9 O -0.513 6.513 10 O -0.348 6.348 11 C 0.298 3.702 12 H 0.077 0.923 13 C -0.528 4.528 14 H 0.078 0.922 15 C 0.069 3.931 16 N -0.868 5.868 17 Si 0.913 3.087 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.280 1.280 21 C 0.022 3.978 22 C -0.176 4.176 23 C -0.219 4.219 24 C -0.091 4.091 25 O -0.179 6.179 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.268 0.732 39 H 0.145 0.855 40 H 0.130 0.870 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.216 9.339 5.707 12.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.198 4.198 4 C -0.133 4.133 5 C -0.108 4.108 6 H 0.121 0.879 7 C -0.200 4.200 8 C 0.300 3.700 9 O -0.403 6.403 10 O -0.264 6.264 11 C 0.244 3.756 12 H 0.094 0.906 13 C -0.565 4.565 14 H 0.096 0.904 15 C -0.137 4.137 16 N -0.503 5.503 17 Si 0.740 3.260 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.206 1.206 21 C -0.029 4.029 22 C -0.195 4.195 23 C -0.238 4.238 24 C -0.158 4.158 25 O -0.075 6.075 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.163 0.837 40 H 0.148 0.852 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -6.052 9.392 5.546 12.474 hybrid contribution 0.289 -1.083 -0.640 1.291 sum -5.763 8.309 4.906 11.239 Atomic orbital electron populations 1.21913 0.95810 1.01657 1.01229 1.21284 0.95219 0.96328 0.99876 1.21767 1.01093 0.95966 1.00990 1.21553 1.01993 0.91910 0.97880 1.21112 1.01184 0.95334 0.93137 0.87878 1.21735 1.02263 1.01398 0.94560 1.23496 0.80296 0.81947 0.84297 1.90579 1.35781 1.64597 1.49298 1.86542 1.64609 1.23625 1.51617 1.19158 0.87371 0.94654 0.74374 0.90554 1.20943 1.36633 0.92558 1.06416 0.90412 1.24946 0.94747 0.99598 0.94407 1.70042 1.35126 1.36688 1.08418 0.86189 0.78077 0.83102 0.78666 1.19278 1.20676 1.20556 1.23587 0.79189 1.00600 0.99507 1.21288 0.99451 1.07321 0.91464 1.21717 0.93267 1.09043 0.99799 1.23588 0.99251 1.10516 0.82440 1.83987 1.24716 1.70482 1.28328 0.92981 0.92950 0.92674 0.89316 0.92672 0.93053 0.93252 0.91226 0.90990 0.91734 0.90981 0.92176 0.92234 0.83706 0.85205 0.79963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.85 37.16 0.33 -1.45 16 2 C -0.11 -1.49 2.72 -90.61 -0.25 -1.73 16 3 C -0.14 -1.65 9.19 37.16 0.34 -1.31 16 4 C -0.10 -1.26 3.78 -26.72 -0.10 -1.36 16 5 C -0.09 -1.32 2.72 -91.78 -0.25 -1.57 16 6 H 0.10 1.43 6.42 -51.93 -0.33 1.09 16 7 C -0.14 -1.83 9.12 37.16 0.34 -1.49 16 8 C 0.46 9.36 6.90 36.00 0.25 9.61 16 9 O -0.51 -11.65 13.32 -18.75 -0.25 -11.90 16 10 O -0.35 -8.22 9.76 -42.00 -0.41 -8.63 16 11 C 0.30 7.91 2.41 -29.03 -0.07 7.84 16 12 H 0.08 2.17 7.16 -51.93 -0.37 1.80 16 13 C -0.53 -14.59 8.89 -34.44 -0.31 -14.90 16 14 H 0.08 2.11 7.81 -52.49 -0.41 1.70 16 15 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 16 N -0.87 -23.97 10.48 55.43 0.58 -23.39 16 17 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 C 0.02 0.58 5.67 -35.62 -0.20 0.38 16 22 C -0.18 -4.43 9.04 -39.70 -0.36 -4.79 16 23 C -0.22 -4.74 10.91 -39.70 -0.43 -5.18 16 24 C -0.09 -1.88 12.09 29.42 0.36 -1.53 16 25 O -0.18 -4.40 10.64 2.18 0.02 -4.38 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.69 6.70 -51.93 -0.35 0.35 16 29 H 0.09 1.54 6.02 -51.93 -0.31 1.22 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.15 3.76 7.49 -52.49 -0.39 3.37 16 40 H 0.13 2.39 8.06 -52.49 -0.42 1.96 16 41 H 0.18 2.88 8.06 -52.49 -0.42 2.45 16 LS Contribution 339.83 15.07 5.12 5.12 Total: -1.00 -30.38 339.83 -6.77 -37.14 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.36 Total: 5.88 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -0.45 Total: -15.72 kcal Atomic # 7 Polarization: -23.97 SS G_CDS: 0.58 Total: -23.39 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.64 Total: -24.91 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.38 -6.77 -37.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346707030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.804 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds