Wall clock time and date at job start Tue Mar 31 2020 01:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.47151 * 2 1 4 4 C 1.52994 * 109.46881 * 119.99353 * 2 1 3 5 5 C 1.53000 * 109.47238 * 65.00439 * 4 2 1 6 6 H 1.08996 * 109.47105 * 305.00085 * 5 4 2 7 7 C 1.53003 * 109.46926 * 64.99749 * 5 4 2 8 8 C 1.50698 * 109.47410 * 184.99922 * 5 4 2 9 9 O 1.20824 * 119.99824 * 359.97438 * 8 5 4 10 10 O 1.34227 * 119.99816 * 180.02562 * 8 5 4 11 11 C 1.45202 * 116.99922 * 179.97438 * 10 8 5 12 12 H 1.09002 * 109.47216 * 330.00564 * 11 10 8 13 13 C 1.50695 * 109.47285 * 209.99756 * 11 10 8 14 14 H 1.07999 * 119.99926 * 275.32783 * 13 11 10 15 15 C 1.37882 * 120.00034 * 95.05638 * 13 11 10 16 16 N 1.31513 * 120.00299 * 174.60361 * 15 13 11 17 17 Si 1.86805 * 119.99627 * 354.60353 * 15 13 11 18 18 H 1.48494 * 109.46901 * 94.11001 * 17 15 13 19 19 H 1.48493 * 109.46773 * 214.10984 * 17 15 13 20 20 H 1.48504 * 109.46913 * 334.10822 * 17 15 13 21 21 C 1.50703 * 109.46850 * 89.99828 * 11 10 8 22 22 C 1.34513 * 125.79133 * 215.07514 * 21 11 10 23 23 C 1.41377 * 106.84209 * 179.88885 * 22 21 11 24 24 C 1.34509 * 106.84467 * 0.37961 * 23 22 21 25 25 O 1.34301 * 125.78883 * 35.39121 * 21 11 10 26 26 H 1.09004 * 109.46929 * 60.00083 * 1 2 3 27 27 H 1.08996 * 109.46898 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46969 * 300.00444 * 1 2 3 29 29 H 1.08992 * 109.47624 * 239.99633 * 2 1 3 30 30 H 1.08996 * 109.47208 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46560 * 299.99313 * 3 2 1 32 32 H 1.08992 * 109.47156 * 59.99347 * 3 2 1 33 33 H 1.08999 * 109.47836 * 305.00325 * 4 2 1 34 34 H 1.09001 * 109.47202 * 185.00187 * 4 2 1 35 35 H 1.09003 * 109.46823 * 299.99935 * 7 5 4 36 36 H 1.08995 * 109.47472 * 60.00180 * 7 5 4 37 37 H 1.09008 * 109.47056 * 180.02562 * 7 5 4 38 38 H 0.96993 * 119.99996 * 180.02562 * 16 15 13 39 39 H 1.08001 * 126.57815 * 0.03649 * 22 21 11 40 40 H 1.08005 * 126.58280 * 180.16455 * 23 22 21 41 41 H 1.08000 * 125.79468 * 179.75123 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.6352 -2.1953 1.1881 6 1 0.5563 -2.2706 1.0528 7 6 2.3450 -2.8707 0.0129 8 6 2.0293 -2.8782 2.4725 9 8 2.5780 -2.2502 3.3468 10 8 1.7716 -4.1842 2.6446 11 6 2.1796 -4.7759 3.9063 12 1 3.0582 -4.2537 4.2852 13 6 2.5118 -6.2304 3.6948 14 1 1.7268 -6.9719 3.7139 15 6 3.8172 -6.6140 3.4715 16 7 4.1232 -7.8907 3.3928 17 14 5.1512 -5.3203 3.2808 18 1 5.7996 -5.0805 4.5950 19 1 6.1666 -5.7961 2.3073 20 1 4.5477 -4.0559 2.7885 21 6 1.0559 -4.6571 4.9034 22 6 1.1956 -4.4514 6.2253 23 6 -0.1071 -4.4038 6.7725 24 6 -0.9649 -4.5917 5.7536 25 8 -0.2548 -4.7445 4.6238 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6053 -0.2616 2.1370 34 1 3.1262 -0.6442 1.2953 35 1 2.0599 -2.3767 -0.9161 36 1 3.4239 -2.7954 0.1481 37 1 2.0563 -3.9209 -0.0310 38 1 5.0416 -8.1605 3.2360 39 1 2.1247 -4.3411 6.7648 40 1 -0.3643 -4.2499 7.8101 41 1 -2.0419 -4.6158 5.8308 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346707031.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:00 Heat of formation + Delta-G solvation = -99.098517 kcal Electronic energy + Delta-G solvation = -22675.928492 eV Core-core repulsion = 19328.982775 eV Total energy + Delta-G solvation = -3346.945716 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.81766 -39.74671 -37.21686 -35.54265 -33.20540 -32.55124 -32.26950 -30.41562 -27.24166 -27.13530 -26.54255 -24.19322 -22.62887 -21.10291 -20.40126 -19.55513 -19.07129 -17.47464 -17.11086 -16.51475 -15.90433 -15.52767 -15.13863 -14.93602 -14.51102 -13.91611 -13.66304 -13.54070 -13.07136 -12.87797 -12.40958 -12.36141 -12.26097 -12.10876 -11.99792 -11.85522 -11.62720 -11.43355 -11.30196 -11.13624 -10.98465 -10.68844 -10.47994 -10.44423 -10.13607 -9.74580 -9.70449 -9.54237 -9.22920 -8.97459 -7.72689 -6.50927 -4.59529 2.45128 2.98768 3.07190 3.19469 3.26175 3.30520 3.62129 3.79670 4.10409 4.77535 4.79871 4.87025 5.00733 5.21450 5.27556 5.38569 5.44933 5.55274 5.60057 5.63125 5.66699 5.73555 5.80580 5.94021 5.97295 6.00532 6.01764 6.10795 6.17532 6.25121 6.30483 6.42858 6.45581 6.51839 6.59256 6.76511 7.09418 7.15632 7.49082 7.89888 8.06610 8.60223 8.70823 9.06013 10.57802 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.013890 B = 0.006571 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.302435 B = 4259.965366 C = 5593.114989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.099 4.099 5 C -0.091 4.091 6 H 0.103 0.897 7 C -0.145 4.145 8 C 0.451 3.549 9 O -0.528 6.528 10 O -0.352 6.352 11 C 0.253 3.747 12 H 0.079 0.921 13 C -0.505 4.505 14 H 0.089 0.911 15 C 0.092 3.908 16 N -0.858 5.858 17 Si 0.869 3.131 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.256 1.256 21 C 0.033 3.967 22 C -0.229 4.229 23 C -0.209 4.209 24 C -0.073 4.073 25 O -0.169 6.169 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.275 0.725 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.707 12.796 -4.643 14.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.203 4.203 4 C -0.137 4.137 5 C -0.110 4.110 6 H 0.121 0.879 7 C -0.202 4.202 8 C 0.295 3.705 9 O -0.419 6.419 10 O -0.268 6.268 11 C 0.201 3.799 12 H 0.097 0.903 13 C -0.540 4.540 14 H 0.107 0.893 15 C -0.117 4.117 16 N -0.492 5.492 17 Si 0.694 3.306 18 H -0.193 1.193 19 H -0.201 1.201 20 H -0.180 1.180 21 C -0.018 4.018 22 C -0.248 4.248 23 C -0.229 4.229 24 C -0.140 4.140 25 O -0.064 6.064 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.518 12.727 -4.665 14.635 hybrid contribution 0.755 0.480 0.410 0.984 sum -4.763 13.208 -4.256 14.671 Atomic orbital electron populations 1.21921 0.95334 1.02035 1.01540 1.21189 0.95917 0.96110 0.98523 1.21821 1.00994 0.95976 1.01519 1.21530 1.01728 0.92447 0.97970 1.21127 1.02733 0.95088 0.92100 0.87873 1.21796 1.00521 1.01731 0.96166 1.23670 0.75525 0.82720 0.88608 1.90550 1.40364 1.66282 1.44702 1.87099 1.74087 1.22203 1.43426 1.19585 0.87717 0.94779 0.77781 0.90323 1.20783 0.94965 0.87888 1.50408 0.89285 1.25108 0.98602 0.95661 0.92329 1.69859 1.20337 1.15140 1.43885 0.86921 0.81731 0.82482 0.79469 1.19289 1.20091 1.17952 1.23337 0.82037 1.00076 0.96395 1.21362 0.98383 1.11326 0.93756 1.21663 0.92915 1.08551 0.99748 1.23822 0.97449 1.08688 0.84089 1.84072 1.17791 1.70012 1.34557 0.92900 0.92237 0.92684 0.90730 0.92718 0.92866 0.92722 0.91115 0.91294 0.91522 0.92415 0.90746 0.91448 0.84057 0.84216 0.79011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.95 37.16 0.33 -1.16 16 2 C -0.10 -1.06 2.78 -90.62 -0.25 -1.31 16 3 C -0.15 -1.39 9.19 37.16 0.34 -1.05 16 4 C -0.10 -1.38 3.50 -26.73 -0.09 -1.47 16 5 C -0.09 -1.45 2.69 -91.77 -0.25 -1.69 16 6 H 0.10 1.48 6.34 -51.93 -0.33 1.15 16 7 C -0.14 -2.08 8.89 37.16 0.33 -1.75 16 8 C 0.45 9.66 6.77 36.00 0.24 9.91 16 9 O -0.53 -12.42 15.14 -18.75 -0.28 -12.70 16 10 O -0.35 -8.46 9.74 -41.99 -0.41 -8.87 16 11 C 0.25 6.45 1.84 -29.04 -0.05 6.39 16 12 H 0.08 2.05 4.64 -51.93 -0.24 1.81 16 13 C -0.51 -14.17 9.23 -34.44 -0.32 -14.49 16 14 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 15 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 16 N -0.86 -24.57 13.96 55.43 0.77 -23.80 16 17 Si 0.87 20.92 27.04 -169.99 -4.60 16.32 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.26 -6.23 6.37 56.52 0.36 -5.87 16 21 C 0.03 0.78 6.17 -35.62 -0.22 0.56 16 22 C -0.23 -4.93 10.81 -39.70 -0.43 -5.36 16 23 C -0.21 -3.80 10.91 -39.71 -0.43 -4.23 16 24 C -0.07 -1.30 12.09 29.41 0.36 -0.95 16 25 O -0.17 -3.76 10.64 2.21 0.02 -3.73 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.60 6.46 -51.93 -0.34 0.26 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.75 6.34 -51.93 -0.33 0.42 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.05 7.96 -51.93 -0.41 0.64 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 0.74 6.46 -51.93 -0.34 0.41 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.15 8.11 -51.92 -0.42 0.73 16 38 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.14 2.85 8.06 -52.49 -0.42 2.43 16 40 H 0.14 2.03 8.06 -52.48 -0.42 1.61 16 41 H 0.19 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 340.25 15.07 5.13 5.13 Total: -1.00 -31.36 340.25 -6.14 -37.49 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.23 Total: 4.31 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -0.54 Total: -14.15 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.77 Total: -23.80 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.67 Total: -25.31 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.60 Total: 16.32 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.36 -6.14 -37.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346707031.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.605 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds