Wall clock time and date at job start Tue Mar 31 2020 01:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47331 * 2 1 4 4 C 1.53001 * 109.46986 * 120.00269 * 2 1 3 5 5 C 1.52995 * 109.47421 * 65.45067 * 4 2 1 6 6 H 1.09002 * 109.47087 * 306.95047 * 5 4 2 7 7 C 1.52995 * 109.47166 * 186.94844 * 5 4 2 8 8 C 1.50699 * 109.47073 * 66.94828 * 5 4 2 9 9 O 1.20830 * 120.00101 * 0.02562 * 8 5 4 10 10 O 1.34231 * 120.00123 * 179.97438 * 8 5 4 11 11 C 1.45203 * 117.00193 * 180.02562 * 10 8 5 12 12 H 1.09000 * 109.46967 * 30.00220 * 11 10 8 13 13 C 1.50698 * 109.47264 * 270.00556 * 11 10 8 14 14 H 1.08002 * 119.99738 * 334.48422 * 13 11 10 15 15 C 1.37876 * 120.00266 * 154.48540 * 13 11 10 16 16 N 1.31519 * 119.99772 * 184.76322 * 15 13 11 17 17 Si 1.86799 * 119.99690 * 4.75934 * 15 13 11 18 18 H 1.48498 * 109.46948 * 94.64092 * 17 15 13 19 19 H 1.48501 * 109.46957 * 214.63583 * 17 15 13 20 20 H 1.48497 * 109.47333 * 334.63930 * 17 15 13 21 21 C 1.50701 * 109.47131 * 150.00478 * 11 10 8 22 22 C 1.34516 * 125.78718 * 215.40079 * 21 11 10 23 23 C 1.41381 * 106.83732 * 180.02562 * 22 21 11 24 24 C 1.34510 * 106.84077 * 359.97438 * 23 22 21 25 25 O 1.34299 * 125.78804 * 35.41663 * 21 11 10 26 26 H 1.09007 * 109.47419 * 304.63510 * 1 2 3 27 27 H 1.09004 * 109.47583 * 64.63922 * 1 2 3 28 28 H 1.08999 * 109.47486 * 184.63391 * 1 2 3 29 29 H 1.09001 * 109.46957 * 239.99990 * 2 1 3 30 30 H 1.08989 * 109.47334 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47030 * 299.99977 * 3 2 1 32 32 H 1.08995 * 109.47058 * 59.99659 * 3 2 1 33 33 H 1.09005 * 109.46754 * 305.44721 * 4 2 1 34 34 H 1.08998 * 109.46944 * 185.45157 * 4 2 1 35 35 H 1.09008 * 109.47145 * 64.93670 * 7 5 4 36 36 H 1.08997 * 109.47327 * 184.93291 * 7 5 4 37 37 H 1.08998 * 109.47689 * 304.93337 * 7 5 4 38 38 H 0.97006 * 119.99311 * 179.97438 * 16 15 13 39 39 H 1.08004 * 126.57907 * 359.97438 * 22 21 11 40 40 H 1.08005 * 126.57307 * 180.02562 * 23 22 21 41 41 H 1.08001 * 125.78532 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6449 -2.1979 1.1826 6 1 0.5720 -2.2795 1.0085 7 6 2.0005 -2.8811 2.5045 8 6 2.3889 -2.8665 0.0555 9 8 3.1568 -2.2277 -0.6244 10 8 2.1994 -4.1721 -0.1925 11 6 2.9498 -4.7497 -1.2932 12 1 3.8958 -4.2200 -1.4057 13 6 2.1509 -4.6266 -2.5651 14 1 1.0738 -4.5600 -2.5219 15 6 2.7950 -4.5989 -3.7839 16 7 2.1073 -4.3975 -4.8867 17 14 4.6445 -4.8474 -3.8686 18 1 4.9400 -6.2779 -4.1359 19 1 5.2064 -4.0134 -4.9613 20 1 5.2573 -4.4484 -2.5762 21 6 3.2196 -6.2048 -1.0084 22 6 4.3328 -6.8795 -1.3476 23 6 4.1628 -8.2064 -0.8901 24 6 2.9562 -8.2630 -0.2983 25 8 2.3893 -7.0478 -0.3732 26 1 -0.3634 0.5841 0.8456 27 1 -0.3634 0.4402 -0.9286 28 1 -0.3634 -1.0243 0.0830 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.5991 -0.2669 2.1365 34 1 3.1255 -0.6375 1.2994 35 1 1.3974 -2.4562 3.3070 36 1 1.8005 -3.9497 2.4266 37 1 3.0570 -2.7243 2.7220 38 1 2.5606 -4.3777 -5.7441 39 1 5.1913 -6.4837 -1.8699 40 1 4.8671 -9.0184 -0.9949 41 1 2.5174 -9.1376 0.1587 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346707032.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:03 Heat of formation + Delta-G solvation = -90.191964 kcal Electronic energy + Delta-G solvation = -22837.069690 eV Core-core repulsion = 19490.510190 eV Total energy + Delta-G solvation = -3346.559499 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.80560 -39.87644 -36.98902 -35.32675 -33.31437 -32.73787 -32.25001 -30.44764 -27.01663 -26.93869 -26.45413 -24.22223 -22.41874 -21.15468 -20.22458 -19.71148 -19.19929 -17.53244 -16.98855 -16.76807 -15.74222 -15.28729 -14.93572 -14.87980 -14.46400 -13.97546 -13.71608 -13.30630 -12.87780 -12.74335 -12.54013 -12.33450 -12.18030 -12.06290 -12.00685 -11.80723 -11.67815 -11.48159 -11.41122 -11.21233 -10.82028 -10.48515 -10.31078 -10.24220 -10.12660 -9.89459 -9.48975 -9.35738 -9.17886 -8.86612 -7.67670 -6.36717 -4.42927 2.46288 3.01761 3.13589 3.19662 3.23864 3.27886 3.57640 3.76410 4.18775 4.80811 4.95796 4.99981 5.07417 5.25264 5.40784 5.47683 5.49590 5.60749 5.63915 5.71597 5.79140 5.90567 5.93967 5.96891 6.02762 6.06334 6.12608 6.20929 6.26622 6.29747 6.43029 6.47283 6.54755 6.57844 6.75068 6.79053 7.08792 7.20018 7.43226 7.88935 8.14530 8.57992 8.73758 9.20901 10.73805 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.016384 B = 0.006445 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.553098 B = 4343.588948 C = 5394.051414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.140 4.140 4 C -0.095 4.095 5 C -0.088 4.088 6 H 0.107 0.893 7 C -0.144 4.144 8 C 0.465 3.535 9 O -0.504 6.504 10 O -0.352 6.352 11 C 0.253 3.747 12 H 0.087 0.913 13 C -0.532 4.532 14 H 0.090 0.910 15 C 0.092 3.908 16 N -0.871 5.871 17 Si 0.866 3.134 18 H -0.265 1.265 19 H -0.281 1.281 20 H -0.256 1.256 21 C 0.049 3.951 22 C -0.253 4.253 23 C -0.207 4.207 24 C -0.073 4.073 25 O -0.163 6.163 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.272 0.728 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.471 2.844 12.717 13.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.129 4.129 3 C -0.198 4.198 4 C -0.133 4.133 5 C -0.107 4.107 6 H 0.125 0.875 7 C -0.201 4.201 8 C 0.307 3.693 9 O -0.392 6.392 10 O -0.269 6.269 11 C 0.199 3.801 12 H 0.105 0.895 13 C -0.568 4.568 14 H 0.107 0.893 15 C -0.115 4.115 16 N -0.506 5.506 17 Si 0.693 3.307 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.181 1.181 21 C -0.003 4.003 22 C -0.272 4.272 23 C -0.226 4.226 24 C -0.140 4.140 25 O -0.058 6.058 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.154 0.846 40 H 0.158 0.842 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.425 3.097 12.377 12.765 hybrid contribution 1.158 -0.497 -0.628 1.408 sum 1.584 2.601 11.749 12.137 Atomic orbital electron populations 1.21916 0.95721 1.01695 1.01284 1.21296 0.95374 0.96302 0.99899 1.21758 1.00971 0.96035 1.00996 1.21535 1.01826 0.91828 0.98096 1.21147 1.01489 0.95327 0.92778 0.87524 1.21758 1.01906 1.01546 0.94875 1.23293 0.80570 0.81328 0.84110 1.90585 1.35499 1.64555 1.48594 1.86398 1.64464 1.24736 1.51259 1.19497 0.94935 0.81244 0.84400 0.89546 1.21009 0.95875 1.52400 0.87552 0.89251 1.24862 0.98576 0.92777 0.95302 1.69868 1.36554 1.45773 0.98361 0.87110 0.85702 0.79128 0.78800 1.18990 1.20668 1.18119 1.23525 0.88083 0.93664 0.95058 1.21368 1.00248 0.94834 1.10793 1.21609 0.98599 0.97560 1.04821 1.23814 0.95036 0.88016 1.07134 1.84101 1.42927 1.18409 1.60341 0.93183 0.92798 0.92505 0.88929 0.92782 0.92956 0.93348 0.91233 0.91089 0.91589 0.91100 0.92348 0.91817 0.84602 0.84246 0.78963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.06 37.16 0.34 -1.59 16 2 C -0.11 -1.60 2.72 -90.62 -0.25 -1.85 16 3 C -0.14 -1.74 9.19 37.15 0.34 -1.40 16 4 C -0.10 -1.28 3.79 -26.73 -0.10 -1.38 16 5 C -0.09 -1.32 2.72 -91.78 -0.25 -1.57 16 6 H 0.11 1.50 6.20 -51.93 -0.32 1.18 16 7 C -0.14 -1.77 9.15 37.16 0.34 -1.43 16 8 C 0.46 9.57 6.90 36.00 0.25 9.81 16 9 O -0.50 -11.68 13.34 -18.75 -0.25 -11.93 16 10 O -0.35 -8.12 9.65 -42.00 -0.41 -8.53 16 11 C 0.25 6.42 2.04 -29.04 -0.06 6.36 16 12 H 0.09 2.26 4.59 -51.93 -0.24 2.02 16 13 C -0.53 -15.32 9.21 -34.44 -0.32 -15.64 16 14 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 15 C 0.09 2.65 5.47 -17.82 -0.10 2.55 16 16 N -0.87 -26.16 13.96 55.43 0.77 -25.39 16 17 Si 0.87 21.51 24.03 -169.99 -4.09 17.43 16 18 H -0.26 -6.36 7.10 56.52 0.40 -5.95 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.26 -6.13 5.68 56.52 0.32 -5.81 16 21 C 0.05 1.16 6.01 -35.62 -0.21 0.94 16 22 C -0.25 -5.55 9.30 -39.70 -0.37 -5.92 16 23 C -0.21 -3.79 10.91 -39.70 -0.43 -4.22 16 24 C -0.07 -1.28 12.09 29.41 0.36 -0.93 16 25 O -0.16 -3.58 10.64 2.27 0.02 -3.55 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.76 6.25 -51.93 -0.32 0.43 16 29 H 0.09 1.72 6.06 -51.93 -0.31 1.40 16 30 H 0.05 0.68 8.14 -51.94 -0.42 0.26 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.01 7.88 -51.93 -0.41 0.60 16 35 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.07 0.94 8.00 -51.93 -0.42 0.52 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.14 2.93 5.55 -52.48 -0.29 2.64 16 40 H 0.14 2.07 8.06 -52.48 -0.42 1.64 16 41 H 0.19 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 332.20 15.07 5.01 5.01 Total: -1.00 -32.08 332.20 -5.58 -37.66 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.18 Total: 5.56 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -0.47 Total: -16.25 kcal Atomic # 7 Polarization: -26.16 SS G_CDS: 0.77 Total: -25.39 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.63 Total: -24.01 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.09 Total: 17.43 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.08 -5.58 -37.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346707032.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.530 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds