Wall clock time and date at job start Tue Mar 31 2020 01:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47272 * 2 1 4 4 C 1.53008 * 109.47408 * 120.00241 * 2 1 3 5 5 C 1.53000 * 109.46877 * 64.99603 * 4 2 1 6 6 H 1.08999 * 109.47496 * 304.99993 * 5 4 2 7 7 C 1.52995 * 109.47057 * 65.00544 * 5 4 2 8 8 C 1.50705 * 109.46848 * 185.00406 * 5 4 2 9 9 O 1.20826 * 119.99911 * 0.02562 * 8 5 4 10 10 O 1.34230 * 120.00077 * 180.02562 * 8 5 4 11 11 C 1.45198 * 116.99935 * 180.02562 * 10 8 5 12 12 H 1.09000 * 109.47166 * 29.99631 * 11 10 8 13 13 C 1.50704 * 109.47017 * 150.00214 * 11 10 8 14 14 H 1.07998 * 119.99960 * 359.97438 * 13 11 10 15 15 C 1.37873 * 119.99758 * 179.97438 * 13 11 10 16 16 N 1.31520 * 120.00345 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 120.00062 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47136 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47499 * 119.99760 * 17 15 13 20 20 H 1.48503 * 109.47363 * 240.00165 * 17 15 13 21 21 C 1.50702 * 109.46900 * 269.99535 * 11 10 8 22 22 C 1.34512 * 125.79146 * 145.00043 * 21 11 10 23 23 C 1.41376 * 106.84688 * 179.75198 * 22 21 11 24 24 C 1.34517 * 106.83881 * 0.37683 * 23 22 21 25 25 O 1.34305 * 125.78962 * 324.98265 * 21 11 10 26 26 H 1.08998 * 109.47184 * 60.00115 * 1 2 3 27 27 H 1.09010 * 109.47166 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47435 * 299.99665 * 1 2 3 29 29 H 1.09002 * 109.47243 * 239.99818 * 2 1 3 30 30 H 1.09004 * 109.47236 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47351 * 299.99965 * 3 2 1 32 32 H 1.09005 * 109.47194 * 60.00273 * 3 2 1 33 33 H 1.09007 * 109.46490 * 304.99901 * 4 2 1 34 34 H 1.08998 * 109.47543 * 185.00012 * 4 2 1 35 35 H 1.08998 * 109.47089 * 179.97438 * 7 5 4 36 36 H 1.08998 * 109.47166 * 299.99358 * 7 5 4 37 37 H 1.09003 * 109.47232 * 60.00123 * 7 5 4 38 38 H 0.96997 * 120.00295 * 180.02562 * 16 15 13 39 39 H 1.08006 * 126.57585 * 359.97438 * 22 21 11 40 40 H 1.07998 * 126.58562 * 180.23597 * 23 22 21 41 41 H 1.08002 * 125.79423 * 179.89440 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1879 6 1 0.5562 -2.2707 1.0528 7 6 2.3448 -2.8708 0.0127 8 6 2.0293 -2.8785 2.4722 9 8 2.5773 -2.2504 3.3470 10 8 1.7716 -4.1845 2.6444 11 6 2.1786 -4.7759 3.9064 12 1 2.1418 -4.0198 4.6907 13 6 1.2458 -5.9072 4.2550 14 1 0.4287 -6.1564 3.5943 15 6 1.4358 -6.6240 5.4173 16 7 2.4312 -6.3208 6.2217 17 14 0.2793 -8.0257 5.8498 18 1 -0.7507 -8.1628 4.7890 19 1 1.0516 -9.2896 5.9569 20 1 -0.3828 -7.7387 7.1477 21 6 3.5846 -5.3041 3.7834 22 6 4.5138 -5.3017 4.7559 23 6 5.6775 -5.8926 4.2123 24 6 5.3925 -6.2132 2.9374 25 8 4.1224 -5.8573 2.6840 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 2.0567 -3.9211 -0.0308 36 1 2.0597 -2.3768 -0.9162 37 1 3.4238 -2.7956 0.1479 38 1 2.5651 -6.8254 7.0392 39 1 4.3929 -4.9244 5.7607 40 1 6.6159 -6.0535 4.7220 41 1 6.0687 -6.6816 2.2376 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346707033.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:04 Heat of formation + Delta-G solvation = -113.776185 kcal Electronic energy + Delta-G solvation = -22592.362505 eV Core-core repulsion = 19244.780317 eV Total energy + Delta-G solvation = -3347.582188 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.18382 -41.44705 -38.43258 -37.27104 -35.33976 -33.71280 -33.53357 -31.49167 -28.62904 -27.96494 -27.60501 -25.90427 -24.35083 -22.42117 -21.83864 -21.03531 -20.27177 -19.00608 -18.51007 -18.28084 -17.20925 -16.91232 -16.61989 -16.34571 -16.12918 -15.28889 -14.84097 -14.69354 -14.40545 -14.12485 -13.82038 -13.56581 -13.51065 -13.27377 -13.20115 -13.07135 -12.99779 -12.83884 -12.76663 -12.35791 -12.24931 -12.18589 -12.01385 -11.65255 -11.46330 -11.41752 -11.33678 -11.11271 -10.83244 -10.51888 -9.12163 -8.24336 -6.54816 1.09773 1.28863 1.38686 1.40062 1.53021 1.88191 2.10656 2.38116 2.41958 2.99590 3.64696 3.77339 3.88244 4.12562 4.19748 4.23549 4.33009 4.39558 4.44148 4.57518 4.67194 4.71767 4.81665 4.88707 4.92047 4.97771 5.07882 5.15005 5.15201 5.20126 5.25569 5.34439 5.36047 5.41523 5.46301 5.51595 5.58843 5.66483 5.84092 5.96132 6.47042 6.57781 6.92078 7.17815 8.71348 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019236 B = 0.005024 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.274202 B = 5571.972598 C = 6396.029804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.094 4.094 5 C -0.077 4.077 6 H 0.125 0.875 7 C -0.138 4.138 8 C 0.446 3.554 9 O -0.552 6.552 10 O -0.355 6.355 11 C 0.300 3.700 12 H 0.038 0.962 13 C -0.556 4.556 14 H 0.074 0.926 15 C 0.024 3.976 16 N -0.891 5.891 17 Si 0.982 3.018 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.271 1.271 21 C -0.008 4.008 22 C -0.192 4.192 23 C -0.229 4.229 24 C -0.070 4.070 25 O -0.194 6.194 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.107 0.893 37 H 0.049 0.951 38 H 0.271 0.729 39 H 0.124 0.876 40 H 0.165 0.835 41 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.228 7.843 -12.981 15.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 C -0.203 4.203 4 C -0.132 4.132 5 C -0.096 4.096 6 H 0.143 0.857 7 C -0.195 4.195 8 C 0.291 3.709 9 O -0.443 6.443 10 O -0.271 6.271 11 C 0.246 3.754 12 H 0.055 0.945 13 C -0.592 4.592 14 H 0.093 0.907 15 C -0.179 4.179 16 N -0.526 5.526 17 Si 0.805 3.195 18 H -0.185 1.185 19 H -0.202 1.202 20 H -0.196 1.196 21 C -0.058 4.058 22 C -0.211 4.211 23 C -0.248 4.248 24 C -0.137 4.137 25 O -0.092 6.092 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.125 0.875 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.142 0.858 40 H 0.183 0.817 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 0.329 7.917 -12.784 15.040 hybrid contribution -0.019 -0.784 1.476 1.671 sum 0.311 7.133 -11.308 13.373 Atomic orbital electron populations 1.21950 0.94596 1.02224 1.02265 1.21166 0.96447 0.96429 0.96897 1.21826 1.00990 0.95318 1.02206 1.21538 1.01077 0.91212 0.99392 1.21281 1.04181 0.95471 0.88689 0.85728 1.21795 0.99786 1.01065 0.96843 1.24893 0.74653 0.80930 0.90442 1.90573 1.41364 1.66430 1.45886 1.86534 1.73997 1.25103 1.41510 1.18736 0.85399 0.91912 0.79343 0.94463 1.21192 1.13241 1.17098 1.07693 0.90748 1.25843 0.97149 0.99911 0.95026 1.70177 1.29489 1.40750 1.12161 0.85149 0.78316 0.77526 0.78542 1.18523 1.20211 1.19573 1.23344 0.96045 1.00887 0.85541 1.21355 0.93162 1.06993 0.99633 1.22058 1.00226 1.06535 0.95994 1.24686 0.84227 1.05774 0.98983 1.83958 1.25990 1.61585 1.37619 0.91005 0.92294 0.93279 0.89195 0.92812 0.91007 0.93265 0.92696 0.92371 0.92123 0.87466 0.93179 0.92019 0.85776 0.81746 0.74316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.95 71.98 0.64 -1.88 16 2 C -0.09 -1.64 2.78 -10.80 -0.03 -1.67 16 3 C -0.15 -2.38 9.19 71.98 0.66 -1.71 16 4 C -0.09 -2.47 3.50 30.60 0.11 -2.36 16 5 C -0.08 -2.29 2.69 -11.54 -0.03 -2.32 16 6 H 0.13 3.21 6.34 -2.39 -0.02 3.20 16 7 C -0.14 -3.44 8.89 71.98 0.64 -2.80 16 8 C 0.45 19.42 7.22 71.24 0.51 19.93 16 9 O -0.55 -27.54 15.14 21.96 0.33 -27.20 16 10 O -0.36 -17.72 9.74 -48.75 -0.47 -18.19 16 11 C 0.30 16.96 2.41 29.10 0.07 17.03 16 12 H 0.04 2.35 7.16 -2.39 -0.02 2.33 16 13 C -0.56 -31.97 8.89 25.60 0.23 -31.74 16 14 H 0.07 4.19 7.81 -2.91 -0.02 4.17 16 15 C 0.02 1.32 5.30 84.65 0.45 1.77 16 16 N -0.89 -50.86 10.47 21.45 0.22 -50.63 16 17 Si 0.98 43.23 29.54 68.60 2.03 45.25 16 18 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 C -0.01 -0.42 5.67 24.83 0.14 -0.28 16 22 C -0.19 -10.00 9.04 22.19 0.20 -9.80 16 23 C -0.23 -9.66 10.91 22.19 0.24 -9.42 16 24 C -0.07 -2.76 12.09 66.97 0.81 -1.95 16 25 O -0.19 -9.56 10.63 0.92 0.01 -9.55 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.98 6.46 -2.38 -0.02 0.96 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 1.37 6.34 -2.39 -0.02 1.35 16 30 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.05 1.61 7.96 -2.38 -0.02 1.59 16 34 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.67 8.11 -2.39 -0.02 1.65 16 36 H 0.11 1.82 6.46 -2.39 -0.02 1.80 16 37 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 39 H 0.12 6.87 7.49 -2.91 -0.02 6.85 16 40 H 0.16 5.63 8.06 -2.91 -0.02 5.61 16 41 H 0.24 6.34 8.06 -2.91 -0.02 6.32 16 Total: -1.00 -70.82 339.94 7.77 -63.05 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 1.01 Total: 24.50 kcal Atomic # 6 Polarization: -31.87 SS G_CDS: 4.65 Total: -27.22 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.22 Total: -50.63 kcal Atomic # 8 Polarization: -54.82 SS G_CDS: -0.13 Total: -54.95 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -70.82 7.77 -63.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346707033.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.729 kcal (2) G-P(sol) polarization free energy of solvation -70.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds