Wall clock time and date at job start Tue Mar 31 2020 01:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.53006 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46600 * 305.00222 * 4 3 2 6 6 C 1.53005 * 109.47164 * 64.99874 * 4 3 2 7 7 C 1.52999 * 109.47184 * 185.00136 * 4 3 2 8 8 C 1.50705 * 109.46954 * 174.99764 * 7 4 3 9 9 O 1.20829 * 119.99642 * 359.97438 * 8 7 4 10 10 O 1.34225 * 119.99682 * 180.02562 * 8 7 4 11 11 C 1.45200 * 116.99766 * 180.02562 * 10 8 7 12 12 H 1.09008 * 109.47563 * 29.99378 * 11 10 8 13 13 C 1.50702 * 109.46826 * 269.99703 * 11 10 8 14 14 H 1.08001 * 119.99993 * 120.00062 * 13 11 10 15 15 C 1.37875 * 120.00132 * 299.99750 * 13 11 10 16 16 N 1.31511 * 119.99800 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 120.00230 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47139 * 60.00038 * 17 15 13 19 19 H 1.48498 * 109.47366 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47196 * 300.00354 * 17 15 13 21 21 C 1.50698 * 109.47328 * 149.99758 * 11 10 8 22 22 C 1.34519 * 125.78841 * 219.70915 * 21 11 10 23 23 C 1.41382 * 106.83995 * 179.88668 * 22 21 11 24 24 C 1.34517 * 106.83883 * 0.37673 * 23 22 21 25 25 O 1.34295 * 125.79019 * 40.02416 * 21 11 10 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 29 29 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 30 30 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 31 31 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 32 32 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 33 33 H 1.09001 * 109.46504 * 60.00209 * 6 4 3 34 34 H 1.08992 * 109.47210 * 180.02562 * 6 4 3 35 35 H 1.08998 * 109.46817 * 300.00458 * 6 4 3 36 36 H 1.08992 * 109.47354 * 294.99729 * 7 4 3 37 37 H 1.09003 * 109.47170 * 55.00201 * 7 4 3 38 38 H 0.97003 * 120.00200 * 179.97438 * 16 15 13 39 39 H 1.08004 * 126.58030 * 0.03570 * 22 21 11 40 40 H 1.08000 * 126.57867 * 180.16729 * 23 22 21 41 41 H 1.08002 * 125.78845 * 179.74479 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9329 0.8533 0.8427 6 6 4.0806 0.8328 -1.3064 7 6 4.0799 2.8797 0.1264 8 6 5.5818 2.8707 0.2506 9 8 6.1825 1.8224 0.2401 10 8 6.2518 4.0272 0.3739 11 6 7.6968 3.9428 0.4884 12 1 8.0534 3.0646 -0.0501 13 6 8.0798 3.8307 1.9416 14 1 8.6256 2.9667 2.2911 15 6 7.7336 4.8310 2.8250 16 7 7.0687 5.8829 2.3995 17 14 8.2077 4.6917 4.6264 18 1 9.6855 4.6049 4.7440 19 1 7.7217 5.8878 5.3601 20 1 7.5924 3.4713 5.2073 21 6 8.3207 5.1813 -0.1014 22 6 9.4407 5.2200 -0.8455 23 6 9.6587 6.5744 -1.1875 24 6 8.6635 7.2833 -0.6250 25 8 7.8562 6.4343 0.0317 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.7176 1.4222 -2.1484 34 1 5.1705 0.8324 -1.3058 35 1 3.7173 -0.1909 -1.3960 36 1 3.7919 3.4462 -0.7591 37 1 3.6449 3.3434 1.0118 38 1 6.8247 6.5865 3.0210 39 1 10.0542 4.3777 -1.1294 40 1 10.4705 6.9652 -1.7830 41 1 8.5356 8.3538 -0.6899 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346720803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:43 Heat of formation + Delta-G solvation = -94.728208 kcal Electronic energy + Delta-G solvation = -22313.146408 eV Core-core repulsion = 18966.390203 eV Total energy + Delta-G solvation = -3346.756206 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29363 -39.36436 -36.92102 -35.23968 -32.91713 -32.54806 -31.82054 -29.90022 -27.86837 -26.52640 -26.39033 -23.32511 -22.06215 -20.70459 -20.19142 -19.44736 -19.21223 -17.06316 -16.49503 -16.26061 -15.43208 -15.23248 -14.90350 -14.76733 -14.42493 -13.86507 -13.70842 -13.45953 -13.14038 -12.58665 -12.25471 -12.07094 -11.79738 -11.75629 -11.60252 -11.54704 -11.33628 -11.26524 -11.04274 -10.95537 -10.80531 -10.57752 -10.41119 -10.31881 -10.30191 -9.80206 -9.33603 -8.97864 -8.81560 -8.72670 -7.34095 -6.20694 -4.42421 2.92160 3.22282 3.26348 3.29407 3.34781 3.57867 3.97479 4.26186 4.29589 4.86438 4.94061 5.03046 5.12748 5.24380 5.32364 5.53748 5.67824 5.74620 5.76409 5.83241 5.92946 5.93294 5.96561 5.99906 6.02286 6.10027 6.21772 6.24903 6.31593 6.45124 6.50409 6.62158 6.70479 6.81889 6.91653 7.22543 7.49703 7.64276 7.82976 7.87715 8.43789 8.61322 9.05062 9.31407 10.78436 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017316 B = 0.004825 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.593887 B = 5802.075181 C = 6743.831472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.079 4.079 5 H 0.078 0.922 6 C -0.154 4.154 7 C -0.112 4.112 8 C 0.459 3.541 9 O -0.530 6.530 10 O -0.337 6.337 11 C 0.279 3.721 12 H 0.070 0.930 13 C -0.549 4.549 14 H 0.073 0.927 15 C 0.080 3.920 16 N -0.826 5.826 17 Si 0.896 3.104 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 C 0.080 3.920 22 C -0.266 4.266 23 C -0.222 4.222 24 C -0.083 4.083 25 O -0.111 6.111 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.267 0.733 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.051 -3.676 -5.604 10.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.098 4.098 5 H 0.097 0.903 6 C -0.211 4.211 7 C -0.150 4.150 8 C 0.303 3.697 9 O -0.421 6.421 10 O -0.252 6.252 11 C 0.227 3.773 12 H 0.088 0.912 13 C -0.585 4.585 14 H 0.091 0.909 15 C -0.130 4.130 16 N -0.459 5.459 17 Si 0.723 3.277 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.198 1.198 21 C 0.026 3.974 22 C -0.286 4.286 23 C -0.242 4.242 24 C -0.152 4.152 25 O -0.003 6.003 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.192 -3.660 -5.398 10.471 hybrid contribution 0.708 0.180 0.982 1.224 sum -7.485 -3.480 -4.416 9.361 Atomic orbital electron populations 1.21782 0.96257 1.01241 1.01660 1.21573 0.95324 0.97199 1.02232 1.21668 0.94849 0.96696 1.01999 1.20955 0.94246 0.94716 0.99833 0.90317 1.22001 1.03295 0.99810 0.95963 1.21416 0.90316 0.98638 1.04663 1.23221 0.90989 0.82996 0.72542 1.90501 1.70753 1.33116 1.47779 1.86724 1.25322 1.33000 1.80163 1.18737 0.74969 0.87465 0.96161 0.91201 1.21217 1.39069 1.06867 0.91382 0.90925 1.25148 0.93754 0.94609 0.99507 1.70034 1.33445 1.07273 1.35119 0.86577 0.79299 0.77862 0.83978 1.19765 1.20851 1.19767 1.22846 0.95185 0.84673 0.94673 1.21192 1.01677 0.97321 1.08393 1.21495 1.01807 0.93876 1.07008 1.23820 0.94666 0.96093 1.00666 1.84474 1.44815 1.15443 1.55542 0.93082 0.92856 0.92906 0.92040 0.91756 0.91981 0.91925 0.93521 0.90624 0.93003 0.88911 0.88502 0.92249 0.84996 0.85191 0.80053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.97 16 2 C -0.13 -1.28 5.69 -26.73 -0.15 -1.44 16 3 C -0.11 -1.30 4.68 -26.73 -0.13 -1.42 16 4 C -0.08 -1.13 2.04 -90.61 -0.18 -1.31 16 5 H 0.08 1.25 7.96 -51.93 -0.41 0.83 16 6 C -0.15 -2.15 8.69 37.16 0.32 -1.83 16 7 C -0.11 -1.85 5.29 -27.88 -0.15 -2.00 16 8 C 0.46 10.06 7.64 36.01 0.28 10.33 16 9 O -0.53 -12.42 13.19 -18.75 -0.25 -12.67 16 10 O -0.34 -8.51 9.26 -41.27 -0.38 -8.89 16 11 C 0.28 7.27 2.58 -29.04 -0.07 7.19 16 12 H 0.07 1.79 7.15 -51.92 -0.37 1.42 16 13 C -0.55 -15.21 8.90 -34.44 -0.31 -15.51 16 14 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 15 C 0.08 2.18 5.24 -17.82 -0.09 2.09 16 16 N -0.83 -22.78 10.45 55.43 0.58 -22.20 16 17 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.08 2.01 5.68 -35.62 -0.20 1.81 16 22 C -0.27 -5.96 10.80 -39.70 -0.43 -6.39 16 23 C -0.22 -4.44 10.91 -39.70 -0.43 -4.88 16 24 C -0.08 -1.71 12.09 29.42 0.36 -1.35 16 25 O -0.11 -2.79 8.63 4.50 0.04 -2.75 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.65 6.57 -51.93 -0.34 0.31 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.27 5.96 -51.93 -0.31 0.97 16 35 H 0.05 0.64 6.57 -51.93 -0.34 0.30 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.13 2.67 8.06 -52.48 -0.42 2.25 16 40 H 0.13 2.14 8.06 -52.49 -0.42 1.72 16 41 H 0.18 2.93 8.06 -52.49 -0.42 2.51 16 LS Contribution 340.30 15.07 5.13 5.13 Total: -1.00 -30.40 340.30 -7.12 -37.52 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.39 Total: 3.67 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -0.83 Total: -15.68 kcal Atomic # 7 Polarization: -22.78 SS G_CDS: 0.58 Total: -22.20 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.59 Total: -24.31 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.40 -7.12 -37.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346720803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.208 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds