Wall clock time and date at job start Tue Mar 31 2020 01:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.53006 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46600 * 305.00222 * 4 3 2 6 6 C 1.53005 * 109.47164 * 64.99874 * 4 3 2 7 7 C 1.52999 * 109.47184 * 185.00136 * 4 3 2 8 8 C 1.50705 * 109.46954 * 174.99764 * 7 4 3 9 9 O 1.20829 * 119.99642 * 359.97438 * 8 7 4 10 10 O 1.34225 * 119.99682 * 180.02562 * 8 7 4 11 11 C 1.45200 * 116.99766 * 180.02562 * 10 8 7 12 12 H 1.09008 * 109.47563 * 29.99378 * 11 10 8 13 13 C 1.50702 * 109.46826 * 269.99703 * 11 10 8 14 14 H 1.08001 * 119.99993 * 120.00062 * 13 11 10 15 15 C 1.37875 * 120.00132 * 299.99750 * 13 11 10 16 16 N 1.31511 * 119.99800 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 120.00230 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47139 * 60.00038 * 17 15 13 19 19 H 1.48498 * 109.47366 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47196 * 300.00354 * 17 15 13 21 21 C 1.50698 * 109.47328 * 149.99758 * 11 10 8 22 22 C 1.34519 * 125.78841 * 219.70915 * 21 11 10 23 23 C 1.41382 * 106.83995 * 179.88668 * 22 21 11 24 24 C 1.34517 * 106.83883 * 0.37673 * 23 22 21 25 25 O 1.34295 * 125.79019 * 40.02416 * 21 11 10 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 29 29 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 30 30 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 31 31 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 32 32 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 33 33 H 1.09001 * 109.46504 * 60.00209 * 6 4 3 34 34 H 1.08992 * 109.47210 * 180.02562 * 6 4 3 35 35 H 1.08998 * 109.46817 * 300.00458 * 6 4 3 36 36 H 1.08992 * 109.47354 * 294.99729 * 7 4 3 37 37 H 1.09003 * 109.47170 * 55.00201 * 7 4 3 38 38 H 0.97003 * 120.00200 * 179.97438 * 16 15 13 39 39 H 1.08004 * 126.58030 * 0.03570 * 22 21 11 40 40 H 1.08000 * 126.57867 * 180.16729 * 23 22 21 41 41 H 1.08002 * 125.78845 * 179.74479 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9329 0.8533 0.8427 6 6 4.0806 0.8328 -1.3064 7 6 4.0799 2.8797 0.1264 8 6 5.5818 2.8707 0.2506 9 8 6.1825 1.8224 0.2401 10 8 6.2518 4.0272 0.3739 11 6 7.6968 3.9428 0.4884 12 1 8.0534 3.0646 -0.0501 13 6 8.0798 3.8307 1.9416 14 1 8.6256 2.9667 2.2911 15 6 7.7336 4.8310 2.8250 16 7 7.0687 5.8829 2.3995 17 14 8.2077 4.6917 4.6264 18 1 9.6855 4.6049 4.7440 19 1 7.7217 5.8878 5.3601 20 1 7.5924 3.4713 5.2073 21 6 8.3207 5.1813 -0.1014 22 6 9.4407 5.2200 -0.8455 23 6 9.6587 6.5744 -1.1875 24 6 8.6635 7.2833 -0.6250 25 8 7.8562 6.4343 0.0317 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.7176 1.4222 -2.1484 34 1 5.1705 0.8324 -1.3058 35 1 3.7173 -0.1909 -1.3960 36 1 3.7919 3.4462 -0.7591 37 1 3.6449 3.3434 1.0118 38 1 6.8247 6.5865 3.0210 39 1 10.0542 4.3777 -1.1294 40 1 10.4705 6.9652 -1.7830 41 1 8.5356 8.3538 -0.6899 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346720803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:41 Heat of formation + Delta-G solvation = -109.913363 kcal Electronic energy + Delta-G solvation = -22313.804886 eV Core-core repulsion = 18966.390203 eV Total energy + Delta-G solvation = -3347.414683 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.03601 -41.10315 -38.22172 -36.91397 -34.91848 -33.61563 -33.53139 -31.71313 -29.22199 -28.28519 -27.44147 -25.16129 -23.23675 -22.31886 -21.49965 -21.19107 -20.63599 -18.97905 -18.23010 -17.99004 -17.07740 -16.72556 -16.64808 -16.24764 -16.07927 -15.14985 -15.06360 -14.74349 -14.35162 -14.25051 -13.61636 -13.54761 -13.37521 -13.19702 -13.11143 -13.04690 -12.85729 -12.72668 -12.55386 -12.35458 -12.20911 -11.83992 -11.80375 -11.67047 -11.49417 -11.25602 -11.14021 -10.84388 -10.73842 -10.49267 -9.09033 -8.22408 -6.52920 1.18035 1.36245 1.38608 1.45465 1.59586 1.90519 2.31003 2.33155 2.60891 3.08020 3.78788 3.86426 3.96812 4.20399 4.30123 4.34502 4.40113 4.44807 4.48813 4.53646 4.68089 4.72608 4.77088 4.82526 4.94805 4.98620 5.07363 5.13111 5.18676 5.24330 5.26226 5.32135 5.43250 5.45083 5.55215 5.57553 5.59862 5.80048 5.90652 6.07904 6.51438 6.73345 7.16926 7.29579 8.75404 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017316 B = 0.004825 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.593887 B = 5802.075181 C = 6743.831472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.107 4.107 4 C -0.074 4.074 5 H 0.057 0.943 6 C -0.150 4.150 7 C -0.104 4.104 8 C 0.446 3.554 9 O -0.552 6.552 10 O -0.354 6.354 11 C 0.278 3.722 12 H 0.056 0.944 13 C -0.580 4.580 14 H 0.058 0.942 15 C 0.043 3.957 16 N -0.844 5.844 17 Si 0.955 3.045 18 H -0.270 1.270 19 H -0.271 1.271 20 H -0.273 1.273 21 C 0.039 3.961 22 C -0.267 4.267 23 C -0.220 4.220 24 C -0.083 4.083 25 O -0.141 6.141 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.040 0.960 35 H 0.068 0.932 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.269 0.731 39 H 0.144 0.856 40 H 0.170 0.830 41 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.927 -2.761 -6.042 11.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.144 4.144 4 C -0.093 4.093 5 H 0.075 0.925 6 C -0.207 4.207 7 C -0.142 4.142 8 C 0.292 3.708 9 O -0.444 6.444 10 O -0.270 6.270 11 C 0.226 3.774 12 H 0.074 0.926 13 C -0.616 4.616 14 H 0.076 0.924 15 C -0.166 4.166 16 N -0.477 5.477 17 Si 0.779 3.221 18 H -0.195 1.195 19 H -0.196 1.196 20 H -0.198 1.198 21 C -0.014 4.014 22 C -0.286 4.286 23 C -0.238 4.238 24 C -0.151 4.151 25 O -0.033 6.033 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.134 0.866 37 H 0.123 0.877 38 H 0.078 0.922 39 H 0.162 0.838 40 H 0.188 0.812 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -9.074 -2.753 -5.846 11.140 hybrid contribution 1.009 -0.113 1.012 1.434 sum -8.065 -2.866 -4.834 9.830 Atomic orbital electron populations 1.21757 0.94887 1.01957 1.02081 1.21569 0.96494 0.96230 1.02044 1.21617 0.92036 0.97838 1.02939 1.20948 0.96478 0.92755 0.99121 0.92495 1.21946 1.01004 1.01308 0.96444 1.21575 0.85890 1.00716 1.05986 1.24353 0.93052 0.81927 0.71497 1.90483 1.71751 1.33608 1.48594 1.86700 1.24950 1.34586 1.80722 1.18556 0.75432 0.88014 0.95422 0.92614 1.21366 1.40222 1.07053 0.92955 0.92390 1.25774 0.93590 0.94154 1.03038 1.70142 1.33829 1.07541 1.36153 0.85678 0.78987 0.78063 0.79399 1.19504 1.19560 1.19798 1.22761 0.96658 0.84761 0.97227 1.21581 1.00620 0.99247 1.07153 1.21906 1.02666 0.92380 1.06896 1.24756 0.93758 0.97537 0.99096 1.84406 1.46355 1.15804 1.56784 0.92288 0.92731 0.92191 0.92765 0.91515 0.90504 0.91502 0.91897 0.94066 0.91264 0.86610 0.87730 0.92158 0.83771 0.81214 0.75873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 71.98 0.71 -1.56 16 2 C -0.13 -2.34 5.69 30.60 0.17 -2.16 16 3 C -0.11 -2.21 4.68 30.60 0.14 -2.07 16 4 C -0.07 -2.08 2.04 -10.79 -0.02 -2.11 16 5 H 0.06 1.84 7.96 -2.38 -0.02 1.82 16 6 C -0.15 -4.13 8.69 71.98 0.63 -3.50 16 7 C -0.10 -3.40 5.29 29.85 0.16 -3.24 16 8 C 0.45 20.25 7.64 71.24 0.54 20.80 16 9 O -0.55 -27.19 13.19 21.95 0.29 -26.90 16 10 O -0.35 -18.54 9.26 -49.43 -0.46 -19.00 16 11 C 0.28 15.15 2.58 29.10 0.08 15.23 16 12 H 0.06 3.05 7.15 -2.38 -0.02 3.03 16 13 C -0.58 -33.35 8.90 25.60 0.23 -33.12 16 14 H 0.06 3.36 7.81 -2.91 -0.02 3.34 16 15 C 0.04 2.37 5.24 84.65 0.44 2.81 16 16 N -0.84 -47.09 10.45 21.45 0.22 -46.87 16 17 Si 0.95 43.30 29.54 68.60 2.03 45.32 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 C 0.04 1.99 5.68 24.83 0.14 2.13 16 22 C -0.27 -11.85 10.80 22.19 0.24 -11.61 16 23 C -0.22 -8.25 10.91 22.19 0.24 -8.01 16 24 C -0.08 -3.25 12.09 66.97 0.81 -2.44 16 25 O -0.14 -7.06 8.63 -1.24 -0.01 -7.07 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.20 6.57 -2.39 -0.02 1.19 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.04 1.42 5.96 -2.39 -0.01 1.41 16 35 H 0.07 1.63 6.57 -2.39 -0.02 1.62 16 36 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 37 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 38 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 39 H 0.14 5.84 8.06 -2.91 -0.02 5.81 16 40 H 0.17 4.90 8.06 -2.91 -0.02 4.88 16 41 H 0.22 6.44 8.06 -2.91 -0.02 6.42 16 Total: -1.00 -67.76 340.30 7.59 -60.18 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 1.00 Total: 23.19 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 4.52 Total: -28.85 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.22 Total: -46.87 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -0.18 Total: -52.97 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -67.76 7.59 -60.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346720803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.737 kcal (2) G-P(sol) polarization free energy of solvation -67.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds